LOC113540460 (cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587)


Basic Information

Item Value
gene id LOC113540460
gene name cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16939461 ~ 16960809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936966.2
CTGACCTCTGCGCACAGCGCGCGCACATTACCGGCtcgcaggtggaaagttcatacTAGTGGGGGACATGAAATTAAAGACTTAGAAAACttttaacctctctctctctccctcactctccctCGCGCGCGCTTTGGGCATGTGTCCAGACCCCGCACGCTCCAGCGCGCTCCGCCTCGCTCCGGTGGGGGGGGCTAAAGGCCGCGCGCGCCCTGGCCCACCGCCTCGCTGCCTCCgctatataaacacacattggGAGCTCGCTTAGCGACTCGAACTCACATTGAGAAACtatgtgaaaagagagagagagagagagtgagagagagaaagagagagagagagcatcagAAAAGAAGGTAGACAGACGCACTACAGTCATTTGAAGATTTTCTAGCGCTCTGTAGACATCAGCATCCGTGCACAAGCCGCAGAGGATTATTCCTTTTTCTTTACTCCTTTATTTAACCTTATGACCAGTACTTGAATTTCAGTCTATCAAAAATAGTTTATAgctataaaaatttttttggggggagaGAAGTTTTGAGGACTTtcgtttttcacatttttctcacTTAGATACTTTTAAGTCGAGTTTGAAATTGTCATCAGCTTTCCCACGTGGTTATACTAGTCTGACAAGTTCACGGCAATTTGTCATTCCGCCAAAAACTTCCAACATCCACAGAGGGCTTTGGTTTAAAAATGATGTGCCAAAGTCTTACTTCGACTTATTTCTATTTGGACACAGTTAATTAAAATACCAACTTTTCATACCTTTACTGAACTTTTATAGTTTAGTTTATGTGAGAGATAAAGTTCGGAAAAGTCCATCATTTAGTCTATCATTTAGTGAAATACCTGCAGATTAGAAAAAAGTCGGTGCAGCGCACGTTCCGCTCTAAAGAAAGGCTGAAATCGACTCGAGCTTTCCCGGACACTCGTCGCAATGCTCTTCGGGAGTTTGGACCTGGTGTCTGCGCTGGCCACGCTGGCCGCGTGCTTGGCCTCAGTGGCGCTCCTGATCGCCGTGTCTCAGCAGCTGTGGCAGCTCCGCTGGACCGCCACGCGGGACAAGAACTGCAAGTTGCCCATGCCGAAGGGCTCCATGGGCTTCCCTATCATCGGCGAGACGTGCCACTGGCTGGTCCAGGGTGCGGGGTTCCATGCTTCGAGGAGGCAGAAGTATGGTAACGTGTTTAAAACTCACTTGCTGGGCCGTCCAGTGATCCGGGTGACAGGAGCAGAGAATGTGCGGAAGGTGCTGATGGGGGAACACACTCTGGTGAGTGTGGACTGGCCCCAGAGCACCAGCACTCTTCTAGGACCCAATAGCCTTGCCAACTCCATCGGAGACATCCACCGTAAAAAGAGGAAGATATTTGCTAAAGTCTTCAGCCATGAGGCGCTAGAGAGCTACTTGCCTAAGATCCAGCAGGTGATCCAGGAGACGCTACGTGTGTGGAGCTCCAACCCAAAGCCCATCAATGTGTACCGTGAGTCTCAGCACCTCTCCTTTCAGATGGCCATCCGTGTCCTCCTTGGTTTCCGCATTTCCGATGAAGAGATGCACTTCCTTTTCCACACCTTCCAGGAGTTTGTGGATAATGTTTTTTCATTGCCCATTGACTTGCCCTTCAGTGGCTACAGAAAGGGCATTCGTGCAAGGGACACCCTTCAGAAGGCCATAGAGAAAGCCATCAGGGAGAAGCCACTGTGTACACAGGGGAAGGACTATACTGATGCCTTGGACGTGCTTCTGGAGAGTGCCAAAGAGAATGGGACAGAGCTCAGCATGCAGGAGCTTAAGGAGTCCACCATCGAGTTGATCTTTGCTGCCTTTGCCACCACGGCCAGTGCCAGCACCTCTCTGGTCATGCAGTTACTGCGGCACCCAGCGGTGTTGGAGAAGCTGCGTGAGGAGCTGCGCAACTGCGGCCTTCTGCATGATGGCTGCTTGTGCCAGGGTGAACTGCGGCTTGACAACATCTGCAGCCTCAAGTACCTGGACTGTGTCATCAAGGAGGTGTTGCGTCTCTATGCACCAGTGTCAGGGGGCTACCGCACCGCCATGCAGACCTTTGAGCTTGATGGTGTGCAAATTCCTAAGGGTTGGAGTGTTATGTACAGCATCCGAGACACTCATGACACATCAGCTGTTTTTAAGGACGTGGCGGCCTTCGACCCTGATCGCTTCAGTGCAGAGCGCAGCGAGGATCGCGAGGGCCGCTTCCACTACCTGCCCTTCGGAGGTGGTGTGCGCTCATGCCTGGGGAAACAGCTGGCCACGCTCTTCCTCAAGCTGCTGGCTATAGAGCTGGCCGGGGGGAGCCGCTTCGAGCTGGCCACGCGGACGTTCCCACGTCTGGTCTCCGTCCCTGTGGTCCACCCCACTGACGGCCTCCGAGTCAAGTTCTTTGGCCTGGACTCCAACCAGAACCAGATCATGTCCAAGACAGACGAGATGCTGGGTGCCACTGTGTGAGAGGGGGAAAGTGGAGGAAGTGGATGTGAGAGTTATTTTTGACacttatgtttaatgttgttttgtCAAGTGGCAAAAATCTAGTGAGTTGAGAGAGACACTCTGCCTGTCAGTTTCAAGATGTCACTTTTGCCAAAAATGTACAGTCTATCTTtttctataaaaatgtaaaaaaaacacataattaaaaaaaaaaaacataaatgtaatgCAAAGACCATTAAGCGATGCTAAGACCATTAAGTGATGCTGTGAGAAAGAGGGCACAAGATGAAAGAATGTTAAAAGGAGGACTGTAAGTTTCAAAAAGAACGAAGGATGTAATGTGTGTCCAGCTAAGTAGATATCACAGGGTATGGGCAAGTGTGTGCTCACAGTGAAGTGAGGACATGAAGAATCATTCTTATTATAGCCTGAGGTCTAGTACAGGGGTATCTTtcagggtttgtgtgtgtgtgttattctcaTTTTTGTATGTCTGTAAAACAAATACTTACTTACATGTACATTTGGTTTTgatcatatgtgtgtgtacctatTTGGAGCGGTGGGGTGGCTTCAGGCATTTAGGAATGTAGAAAACAGTGTAAGCTAGAAAGAATAAGAGGAGGGTGTAATTACTCAGGTGTGTAAGTAGAATAGGAGGACTGTCTAGACTAACCCAATACTATTTTGTTTCTGTACCTGCACATAAGTGACaatttattatcatattattacttcaaacagtgtgtgtatgagtgtgtttgtgtgtgtgtcttagagaatgagagagaaaaagagagaacataaaaaaacactcaaCCTGTGTgctattataatttttttgtgttttttttttcattgatgtCACGTTGAATTCTCTCTGTCTTGTCTCCGTGATGTCAGGTTGCAtcaggtgtatgtgtgtgtctgaatagACATGAGACTCTCAAAACAAGCTATATTTTGGGGACGGAGAAAGCTCATACTGCAAAGTGTATATTCAGAAAGATCACTACAGAACACAGAGTTTGCAGGCCGCCATATTTGCTGCTTGAGAGTCAGGATGTTATTCACGTGTCAGAGCAGAGCACTGTTTGGCCTCTGCTGAGAGGGACTGTTCTTTTTCCTGCTGCTCCACCTTGCAACACAATGATGCAAATGGAAAAAAGGTCATTTGATGAAGAAAACAGATTTGCCGATCAtcagtgtgtggtttttttgttaaatggaACCTTCAATGCCACTTCACACGAACTATTTATGTGAGTGACTTGCAGTGAGATTGAAAGAGAGGGGCACTAGGACCATTggtggaattaaaaaaaaccctatggAAGAAATTTATCACTTCTTTCACACATCatgtgaaggatttttttttttttttttataaaacatgcCACTGATCtttctattattaataattgaatgaaatgaaataaaatctgctGCTTCAAATGTACCGCTTTCTAACAGGAGGTAGATAGCTACGGTAGTATGCAAGTGAACTTTGCCTGTTCTACATGCGAATGATGATTGTGTAGCTAAATAGCGATTGGGAAATCATTGCATTGtctaatattgtaatattattactattaatattattgtaataaatattattttaagtgttatttttgttatatttcagAATAGAGTTCTagtataaataaagtttgttggtaaatattgttatatttagaATGACATGAATGGCAGTTATATTGtaaacagtgtttaaatgttaatatggTTTTATGTTATTGTAATTattctatcattattattaccatCATTGCAtttagttaatattaataaacacagaagCACTTGGGGGTATGTTTATATTGAGTGCCATGCGACTACATGTTGATTATTGAGTTTGTCTgtacataatattttattttctttttacaaatccacatttcatttagtttaaatatgaatgttttatctcccttttctttttgttacaATGGTTCTTAAATGTACTTGGCAATTTTATAAACCCCTGTAATAAACTATAATGTGAAAAGCCA
>XM_034304012.1
CTCCAGCAGTGCTCATGGAGGTGCGCTCGCTTCCCGCTCGGGTTTCAGGATTATCGCTGCAGAGTTTGTCCTGGAAAAGCCTCCCCTGCCATACGGGTGCGGGGTTCCATGCTTCGAGGAGGCAGAAGTATGGTAACGTGTTTAAAACTCACTTGCTGGGCCGTCCAGTGATCCGGGTGACAGGAGCAGAGAATGTGCGGAAGGTGCTGATGGGGGAACACACTCTGGTGAGTGTGGACTGGCCCCAGAGCACCAGCACTCTTCTAGGACCCAATAGCCTTGCCAACTCCATCGGAGACATCCACCGTAAAAAGAGGAAGATATTTGCTAAAGTCTTCAGCCATGAGGCGCTAGAGAGCTACTTGCCTAAGATCCAGCAGGTGATCCAGGAGACGCTACGTGTGTGGAGCTCCAACCCAAAGCCCATCAATGTGTACCGTGAGTCTCAGCACCTCTCCTTTCAGATGGCCATCCGTGTCCTCCTTGGTTTCCGCATTTCCGATGAAGAGATGCACTTCCTTTTCCACACCTTCCAGGAGTTTGTGGATAATGTTTTTTCATTGCCCATTGACTTGCCCTTCAGTGGCTACAGAAAGGGCATTCGTGCAAGGGACACCCTTCAGAAGGCCATAGAGAAAGCCATCAGGGAGAAGCCACTGTGTACACAGGGGAAGGACTATACTGATGCCTTGGACGTGCTTCTGGAGAGTGCCAAAGAGAATGGGACAGAGCTCAGCATGCAGGAGCTTAAGGAGTCCACCATCGAGTTGATCTTTGCTGCCTTTGCCACCACGGCCAGTGCCAGCACCTCTCTGGTCATGCAGTTACTGCGGCACCCAGCGGTGTTGGAGAAGCTGCGTGAGGAGCTGCGCAACTGCGGCCTTCTGCATGATGGCTGCTTGTGCCAGGGTGAACTGCGGCTTGACAACATCTGCAGCCTCAAGTACCTGGACTGTGTCATCAAGGAGGTGTTGCGTCTCTATGCACCAGTGTCAGGGGGCTACCGCACCGCCATGCAGACCTTTGAGCTTGATGGTGTGCAAATTCCTAAGGGTTGGAGTGTTATGTACAGCATCCGAGACACTCATGACACATCAGCTGTTTTTAAGGACGTGGCGGCCTTCGACCCTGATCGCTTCAGTGCAGAGCGCAGCGAGGATCGCGAGGGCCGCTTCCACTACCTGCCCTTCGGAGGTGGTGTGCGCTCATGCCTGGGGAAACAGCTGGCCACGCTCTTCCTCAAGCTGCTGGCTATAGAGCTGGCCGGGGGGAGCCGCTTCGAGCTGGCCACGCGGACGTTCCCACGTCTGGTCTCCGTCCCTGTGGTCCACCCCACTGACGGCCTCCGAGTCAAGTTCTTTGGCCTGGACTCCAACCAGAACCAGATCATGTCCAAGACAGACGAGATGCTGGGTGCCACTGTGTGAGAGGGGGAAAGTGGAGGAAGTGGATGTGAGAGTTATTTTTGACacttatgtttaatgttgttttgtCAAGTGGCAAAAATCTAGTGAGTTGAGAGAGACACTCTGCCTGTCAGTTTCAAGATGTCACTTTTGCCAAAAATGTACAGTCTATCTTtttctataaaaatgtaaaaaaaacacataattaaaaaaaaaaaacataaatgtaatgCAAAGACCATTAAGCGATGCTAAGACCATTAAGTGATGCTGTGAGAAAGAGGGCACAAGATGAAAGAATGTTAAAAGGAGGACTGTAAGTTTCAAAAAGAACGAAGGATGTAATGTGTGTCCAGCTAAGTAGATATCACAGGGTATGGGCAAGTGTGTGCTCACAGTGAAGTGAGGACATGAAGAATCATTCTTATTATAGCCTGAGGTCTAGTACAGGGGTATCTTtcagggtttgtgtgtgtgtgttattctcaTTTTTGTATGTCTGTAAAACAAATACTTACTTACATGTACATTTGGTTTTgatcatatgtgtgtgtacctatTTGGAGCGGTGGGGTGGCTTCAGGCATTTAGGAATGTAGAAAACAGTGTAAGCTAGAAAGAATAAGAGGAGGGTGTAATTACTCAGGTGTGTAAGTAGAATAGGAGGACTGTCTAGACTAACCCAATACTATTTTGTTTCTGTACCTGCACATAAGTGACaatttattatcatattattacttcaaacagtgtgtgtatgagtgtgtttgtgtgtgtgtcttagagaatgagagagaaaaagagagaacataaaaaaacactcaaCCTGTGTgctattataatttttttgtgttttttttttcattgatgtCACGTTGAATTCTCTCTGTCTTGTCTCCGTGATGTCAGGTTGCAtcaggtgtatgtgtgtgtctgaatagACATGAGACTCTCAAAACAAGCTATATTTTGGGGACGGAGAAAGCTCATACTGCAAAGTGTATATTCAGAAAGATCACTACAGAACACAGAGTTTGCAGGCCGCCATATTTGCTGCTTGAGAGTCAGGATGTTATTCACGTGTCAGAGCAGAGCACTGTTTGGCCTCTGCTGAGAGGGACTGTTCTTTTTCCTGCTGCTCCACCTTGCAACACAATGATGCAAATGGAAAAAAGGTCATTTGATGAAGAAAACAGATTTGCCGATCAtcagtgtgtggtttttttgttaaatggaACCTTCAATGCCACTTCACACGAACTATTTATGTGAGTGACTTGCAGTGAGATTGAAAGAGAGGGGCACTAGGACCATTggtggaattaaaaaaaaccctatggAAGAAATTTATCACTTCTTTCACACATCatgtgaaggatttttttttttttttttataaaacatgcCACTGATCtttctattattaataattgaatgaaatgaaataaaatctgctGCTTCAAATGTACCGCTTTCTAACAGGAGGTAGATAGCTACGGTAGTATGCAAGTGAACTTTGCCTGTTCTACATGCGAATGATGATTGTGTAGCTAAATAGCGATTGGGAAATCATTGCATTGtctaatattgtaatattattactattaatattattgtaataaatattattttaagtgttatttttgttatatttcagAATAGAGTTCTagtataaataaagtttgttggtaaatattgttatatttagaATGACATGAATGGCAGTTATATTGtaaacagtgtttaaatgttaatatggTTTTATGTTATTGTAATTattctatcattattattaccatCATTGCAtttagttaatattaataaacacagaagCACTTGGGGGTATGTTTATATTGAGTGCCATGCGACTACATGTTGATTATTGAGTTTGTCTgtacataatattttattttctttttacaaatccacatttcatttagtttaaatatgaatgttttatctcccttttctttttgttacaATGGTTCTTAAATGTACTTGGCAATTTTATAAACCCCTGTAATAAACTATAATGTGAAAAGCCA

Function

symbol description
cyp26b1 Predicted to enable retinoic acid 4-hydroxylase activity. Acts upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and retinoic acid catabolic process. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including brain; cranium; hindbrain neural keel; pectoral fin; and pleuroperitoneal region. Used to study craniosynostosis and osteochondrodysplasia. Orthologous to human CYP26B1 (cytochrome P450 family 26 subfamily B member 1).

NR:

description
PREDICTED: cytochrome P450 26B1

GO:

id name namespace
GO:0060365 coronal suture morphogenesis biological_process
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030278 regulation of ossification biological_process
GO:0060536 cartilage morphogenesis biological_process
GO:0048387 negative regulation of retinoic acid receptor signaling pathway biological_process
GO:0034653 retinoic acid catabolic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0060323 head morphogenesis biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12664 CYP26B; cytochrome P450 family 26 subfamily B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936966.2 True 4512 mRNA 0.44 6 16939461 16960809
XM_034304012.1 False 3451 mRNA 0.43 6 16941044 16960809

Neighbor

gene id symbol gene type direction distance location
exoc6b exoc6b coding upstream 18515 16825208 ~ 16920946 (+)
zgc:101765 LOC108267536,LOC108434636 coding upstream 120927 16811400 ~ 16818534 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding upstream 135445 16776894 ~ 16804016 (+)
batf2 batf2 coding upstream 162632 16772399 ~ 16776829 (+)
sb:cb1058 LOC108267120 coding upstream 184054 16752137 ~ 16755407 (+)
LOC113539921 NA coding downstream 224212 17185021 ~ 17189452 (+)
si:ch73-211e3.1 mamld1 coding downstream 247694 17208503 ~ 17275182 (+)
mtm1 mtm1,LOC107749798,LOC107677984,LOC107750584 coding downstream 318677 17279486 ~ 17307870 (+)
mtmr1a mtmr1 coding downstream 347812 17308621 ~ 17329546 (+)
pelp1 pelp1,LOC108434651,LOC102787544,LOC105891152,LOC103362118 coding downstream 444544 17405353 ~ 17419302 (+)
G65663 NA non-coding upstream 168618 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 177586 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 177814 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 178123 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 178354 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 396529 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 397677 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 441750 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 450185 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 470268 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 568504 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 620295 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 899477 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2280525 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2670121 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 374688 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 648683 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1039349 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1152624 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1236503 18197312 ~ 18208564 (+)

Expression


Co-expression Network