tifa (tifa,LOC100304890)


Basic Information

Item Value
gene id tifa
gene name tifa,LOC100304890
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12198342 ~ 12206875 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936972.2
CCCTCGGGTTTAAGCCAGtgcaaACAGCAGAGCTCCGTTAGTTTGAAGATGAGTAGTGTGGTGTACAGTTACTGAGTGTTTCACTCCAAACCAGAAGACAGAAGCAGGAAGTGTTTAGGATCGTGAAAAGATAACATTCTAAGGAGAAGTCTTTTTTGAGATCATCCAGAACAATGttggctgtgtctcaaaccaTGGTGACGGAGGAAAGCCTCACCTGTCTCCACGTTCAGCTGTATCATCCAGACCAGTCCACGCAACCTCTCTACAGCCTTCTGCGCATGAGCCAACCTTACAAGATCAGCGCCGAAGATCCGATCAGGCTGGGCCGTGATGGACAGTCGTGCTCATTTGTGCTGAATGACGGCCATGTTTCCCGAAAGCAGCTCTCCATCCAGGCATATCGCAAGGCTGGTAGCCCAGACCTACGCTTCACTGTGCAGAACATGAGCCAGAGAGGCAAGATTATGGTAAACGGGTATGAACTGGGCCATCTAGAGCGGGCTGATCTGGAGGAAAAAGCCCTGCTCAGATTTGGCAAATATGAGTTGCTGATATGGAAGGAGCCTGGTGAGGCACAGGACAGTTTTGAAGTTTTGTTTGAAAAGCTGAATGTTTCCCCTTCAAGGGAAATGGGTATAGATTTGCCGTGCAGGATAGCAGTGATGGATACAGGTGTGAGAAACTATCAGAATAGATCACCCATGAGTCCAGAGCCACTGGAAAGTGACGAGAACCTGTATATGCAGCAGCCAAGAGAACATTTTTAGGGATCCGAAGATGAGTTCACCAAAAGGCATTCTGGGGTTATTTTATGTGCAAGGATGCGGATAAGGCTGCTGATTTCGCACATGACATTTCCTCATTTCATTGTGTGTGAGGACAGGCATGTTTTCAGCTTCAGACTTTTGGTTCTGTTCTGTCGttcttgtcatgttttattttattttattttatttttttcttgccttaactcagtttttttttattgttacttaAATACTTTTTGTAAATAGCTGACAAATAATTGAACAAAACGCCACTGAGCCAAATGTTTAgcttctctctatatatctataaCTGTCACAAACACTTAACAccacattattatttatctagAATCATTTAAATGTATGATATACTGATTAACTACCATGCATTTATTTAGTATGTACATATGTAGTGTTACATGAGCCATGCTTATGTACAGGATAGTATGCCATCCTATACCATCCTAAAGATCCATTATtcatattcttattcttattcttattcttattattattcttattaacaCCTTTGTTTAACCTGAAGCACAATactgttttaaacaaataaaagcaattttGTAAA
>XM_034303320.1
CCCAGGCGGTACTGTACTACTgagtacagtagtgtgtgttcttttaaaCTTTACTTGAATATACCGCAAGGATGCGCTCCTTCCCTCGGGTTTAAGCCAGATAACATTCTAAGGAGAAGTCTTTTTTGAGATCATCCAGAACAATGttggctgtgtctcaaaccaTGGTGACGGAGGAAAGCCTCACCTGTCTCCACGTTCAGCTGTATCATCCAGACCAGTCCACGCAACCTCTCTACAGCCTTCTGCGCATGAGCCAACCTTACAAGATCAGCGCCGAAGATCCGATCAGGCTGGGCCGTGATGGACAGTCGTGCTCATTTGTGCTGAATGACGGCCATGTTTCCCGAAAGCAGCTCTCCATCCAGGCATATCGCAAGGCTGGTAGCCCAGACCTACGCTTCACTGTGCAGAACATGAGCCAGAGAGGCAAGATTATGGTAAACGGGTATGAACTGGGCCATCTAGAGCGGGCTGATCTGGAGGAAAAAGCCCTGCTCAGATTTGGCAAATATGAGTTGCTGATATGGAAGGAGCCTGGTGAGGCACAGGACAGTTTTGAAGTTTTGTTTGAAAAGCTGAATGTTTCCCCTTCAAGGGAAATGGGTATAGATTTGCCGTGCAGGATAGCAGTGATGGATACAGGTGTGAGAAACTATCAGAATAGATCACCCATGAGTCCAGAGCCACTGGAAAGTGACGAGAACCTGTATATGCAGCAGCCAAGAGAACATTTTTAGGGATCCGAAGATGAGTTCACCAAAAGGCATTCTGGGGTTATTTTATGTGCAAGGATGCGGATAAGGCTGCTGATTTCGCACATGACATTTCCTCATTTCATTGTGTGTGAGGACAGGCATGTTTTCAGCTTCAGACTTTTGGTTCTGTTCTGTCGttcttgtcatgttttattttattttattttatttttttcttgccttaactcagtttttttttattgttacttaAATACTTTTTGTAAATAGCTGACAAATAATTGAACAAAACGCCACTGAGCCAAATGTTTAgcttctctctatatatctataaCTGTCACAAACACTTAACAccacattattatttatctagAATCATTTAAATGTATGATATACTGATTAACTACCATGCATTTATTTAGTATGTACATATGTAGTGTTACATGAGCCATGCTTATGTACAGGATAGTATGCCATCCTATACCATCCTAAAGATCCATTATtcatattcttattcttattcttattcttattattattcttattaacaCCTTTGTTTAACCTGAAGCACAATactgttttaaacaaataaaagcaattttGTAAA
>XM_034303321.1
TTTGAAATGTACAACTTCATGCTAGATCTGAAGTTGATCAAAACGCAGCTAACAGCAGCACTAGGCCGCTAATCACACTTCCTCTTTGAGGATACGTTTACTCAGCTGGCTAGCTCGCTATACAACAAGGCGGTGTGTGATATAGACCTGGTGTTCTCAGAAcaaatttttacataaaaaacacTCGAGAGACGACGGAATAAACTCCGGTATTAACCCGACTTGCTGCAGGATTACCGCCTGCTTCGAGAGGCTTCTCCACCTGGCTAGGTTGCTAATGATAACATTCTAAGGAGAAGTCTTTTTTGAGATCATCCAGAACAATGttggctgtgtctcaaaccaTGGTGACGGAGGAAAGCCTCACCTGTCTCCACGTTCAGCTGTATCATCCAGACCAGTCCACGCAACCTCTCTACAGCCTTCTGCGCATGAGCCAACCTTACAAGATCAGCGCCGAAGATCCGATCAGGCTGGGCCGTGATGGACAGTCGTGCTCATTTGTGCTGAATGACGGCCATGTTTCCCGAAAGCAGCTCTCCATCCAGGCATATCGCAAGGCTGGTAGCCCAGACCTACGCTTCACTGTGCAGAACATGAGCCAGAGAGGCAAGATTATGGTAAACGGGTATGAACTGGGCCATCTAGAGCGGGCTGATCTGGAGGAAAAAGCCCTGCTCAGATTTGGCAAATATGAGTTGCTGATATGGAAGGAGCCTGGTGAGGCACAGGACAGTTTTGAAGTTTTGTTTGAAAAGCTGAATGTTTCCCCTTCAAGGGAAATGGGTATAGATTTGCCGTGCAGGATAGCAGTGATGGATACAGGTGTGAGAAACTATCAGAATAGATCACCCATGAGTCCAGAGCCACTGGAAAGTGACGAGAACCTGTATATGCAGCAGCCAAGAGAACATTTTTAGGGATCCGAAGATGAGTTCACCAAAAGGCATTCTGGGGTTATTTTATGTGCAAGGATGCGGATAAGGCTGCTGATTTCGCACATGACATTTCCTCATTTCATTGTGTGTGAGGACAGGCATGTTTTCAGCTTCAGACTTTTGGTTCTGTTCTGTCGttcttgtcatgttttattttattttattttatttttttcttgccttaactcagtttttttttattgttacttaAATACTTTTTGTAAATAGCTGACAAATAATTGAACAAAACGCCACTGAGCCAAATGTTTAgcttctctctatatatctataaCTGTCACAAACACTTAACAccacattattatttatctagAATCATTTAAATGTATGATATACTGATTAACTACCATGCATTTATTTAGTATGTACATATGTAGTGTTACATGAGCCATGCTTATGTACAGGATAGTATGCCATCCTATACCATCCTAAAGATCCATTATtcatattcttattcttattcttattcttattattattcttattaacaCCTTTGTTTAACCTGAAGCACAATactgttttaaacaaataaaagcaattttGTAAA

Function

symbol description
tifa Involved in several processes, including cytoplasmic pattern recognition receptor signaling pathway; positive regulation of I-kappaB kinase/NF-kappaB signaling; and protein homooligomerization. Located in cytoplasm.

NR:

description
TRAF-interacting protein with FHA domain-containing protein A-like

GO: NA

KEGG:

id description
K23826 TIFA; TRAF-interacting protein with FHA domain-containing protein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936972.2 False 1353 mRNA 0.41 3 12199451 12206875
XM_034303320.1 False 1323 mRNA 0.41 2 12199369 12206875
XM_034303321.1 True 1503 mRNA 0.41 2 12198342 12206875

Neighbor

gene id symbol gene type direction distance location
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding upstream 75739 12099805 ~ 12122603 (+)
si:dkey-171c9.3 LOC108268329 coding upstream 105289 12086179 ~ 12093053 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding upstream 374194 11818766 ~ 11824148 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding upstream 481603 11707459 ~ 11716739 (+)
zgc:162171 LOC108267158 coding upstream 560772 11631976 ~ 11637570 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding downstream 301999 12508874 ~ 12670541 (+)
LOC113540507 LOC108267598 coding downstream 505966 12712841 ~ 12716732 (+)
epoa epo coding downstream 511378 12718253 ~ 12733478 (+)
gigyf1a gigyf1 coding downstream 535382 12742257 ~ 12767904 (+)
wrap53 wrap53 coding downstream 570302 12777177 ~ 12788225 (+)
G63061 NA non-coding upstream 194119 12003990 ~ 12004223 (+)
G62983 NA non-coding upstream 260583 11934829 ~ 11937759 (+)
G62967 NA non-coding upstream 285236 11912850 ~ 11913106 (+)
G62932 NA non-coding upstream 334659 11862633 ~ 11863683 (+)
G62654 NA non-coding upstream 522647 11675313 ~ 11675695 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding downstream 41788 12248663 ~ 12249788 (+)
G63241 NA non-coding downstream 148675 12355550 ~ 12357681 (+)
G63242 NA non-coding downstream 150957 12357832 ~ 12358248 (+)
LOC113540557 NA non-coding downstream 561710 12768585 ~ 12772822 (+)
G63547 NA non-coding downstream 595019 12801894 ~ 12834330 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 493006 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 593112 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 1534931 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1702872 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1706473 10491797 ~ 10491869 (+)
si:dkey-112a7.4 LOC108268066 other downstream 85616 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 999782 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1068587 13275462 ~ 13285834 (+)
G63903 NA other downstream 1211502 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 1261677 13468552 ~ 13475037 (+)

Expression


Co-expression Network