efnb3b (efnb3,efnb3b,LOC107597046,LOC106577756)


Basic Information

Item Value
gene id efnb3b
gene name efnb3,efnb3b,LOC107597046,LOC106577756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12795941 ~ 12861217 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936981.2
GACGTGTACGTGTGGATTCTCAGGATGGAGCAGAATAAATAAAGGGTTGGGAGAATTGTGCAGGCTGGATAACACCGCCTcatgttacatttaataaaacccCAAAGAAAAATCCACTCGGTTAGTGCAGCCGCCAGCCGGAAGATAGGGCTTTCCCCCTTTCCCCTCCCTCTCCTTTTCTCCAACAAGTCAGTCTGTCAGCGAGCTAGGACAAATCTCACCACAAGGCTTTTCAGCAGCAAGTGAAGGAGACAGGAGCACGAAGCGCTCTACTAAAGCCATAACCCACCGGGATTTAGCCATCCAGCACCACCGCACACTCATTCTCTGCCTTTTGCCTCTCTATTGAGCGCATTAATCAGTGTGCTagagtttaacatttatttctgctttctTGGTTTGGCTGGTTGTTTTTATACACATGCCCACATCTGAGCCCTGCACGCCAGGCACGATCGGTTTCATCGAAATCCAGTGCGCAAGAAGCAGCCGGAGCGAGTGAAGCGCTCAGAGCGCTGAGGAATAGCGAGGAGAGCGCAGGAGAGCAagtggaggagagaagaggaggaaaaacaaGGAGAACAAGACAGGCACCGTCGCGGTTTGCTTTCTGAGAATGTAACTTTGCGAGGCCAAGAAGCGCATTTCGTTTTAATCACACATCCATCTGTTCTCatgctttgatttttttattattattttttttaattttctaattttttgcATCCTTCATCTCTTGGAAGAAAAAACGCAGCAGAAGAAGGAAGGGACGAAAAAGGGTAATGGGAAGGAAGAGAGATCTTGCAGCCGAAGACAGCGCGAGAATTTCAATAAAATTAGACTCTTGCCAATTGTAAAGCTGACAACCCCGGATTAAAAGCGACTCTGTGTCAGGATTGGTGCTGTTAGTGGAGTTTTCTTTCCACGACTGACAGAGCACAGACTTTGAGGAAAGAAGATAAAGCCGACAATTAAGAAATACTAGTCTAGTCGTTTTGGGGCTTTCTGTAAAGTGTGCCTTTACAGAATATTTAGTGGGATTTCATCTGCTTCATCTCAGAGCGGATAATCCAAACTCGACAGTAATAAACCGTGCGGGGTTTTTGTGCCTTTGGTGTTGTGTTGATATCCATGCGGACACATTGCGCTTTAACGCACTGACGGATTCCCCCTGTAGCCTTACTGAGCTTTAGGCTTTGTTCCTGAAGGCTTCCTCCTGCTGTGTTCTGGGGGAAAATCTCCTTTATCCATGATGGGGGAACGCAGACCGGGTTCTGGGCTTGACATGGCGAGTCCGAGCTGTGCAAACGCGCTGGGATTTCTGCTCATATTATTGGTGGATTTACTCGGAATCACGGCGACGAACATGGAGCCAATCTACTGGAACTCCCTGAACAAAAGGTTTAGTGATGATAGGGGTTATATCCTGTACCCCCAGATAGGGGACCGTCTGGACCTCATATGTCCTGCTTCGGACCCCCCAGGACCCCGCGCTCCAGCCGAGTATGAGTACTATAAGCTATACCTGGTGTCCTCCCGTGAGCAGGCAGACAGATGTGAGGTGACAGGATCTCCAAACCTGCTACTCACCTGCGACAAGCCCAACAGTGACATGCGCTTCACCATCAAGTTCCAGGAGTACTCGCCCAACCTCTGGGGACATGAGTTCAAAACCATGCACGATTACTACATCatcgCCACATCGGACGGCACGCGTCAGGGGCTGGAGAGCAtgagaggaggagtgtgtgcCACACAAGGCATGAAGGTGGTGCTGAAAGTTGGACAaaGTCCCTACGGATTGCCCCCAAAATCTGCCAAACCGGACCAGCCAGGTCATACTAACACCAGAAACCAAGGAGGCAGTGGGAACACAACTCTTCCTAGAGTGCCTGGTGGGGGCGGAGCCACAGCAGGCGGTGCAAATGGTCCTCTCCCCGCCTCCAACATTGCCGTCATCGCAGGAGCAGCTGGAGGCTCCGCCTTCCTCCTTTTGGTCACTGCAGTCATTTGTGTGGTGTGCTACCGCCGGCGGCACTCGAAGCATTCAGAGTCGCACCACCCGCCGCTTTCTCTCTCATCCCTGACCTCACCTAAGCGCGGGGGTGGAGGAGGGGGTGGCAACAACAACGGCTCTGAGCCAAGTGACATCATCATCCCACTGCGCACTTCAGACTCGGCCTACTGCCCGCACTATGAGAAGGTTAGTGGGGACTACGGGCACCCAGTCTACATTGTGCAGGAGATGCCACCTCAGAGCCCCGCCAACATCTACTACAAAGTATGAGGACGGGCGCACAGCATTAATGCCAGCCTGCAGTGCCCAGACCACGCCCCCTCACCTACTACCTAAACCATAGCAGTATGAACCGACTTCTCCTGTATCTCTGCAGTCTCAGTTCTGACTGTGAAAGCCCCAAACCCTGTGACTGAAACCCactctcacccacacacacacacacatacacacaaacagacacacacgcacacacatatacacatatacacacgcctCCTAAACCTCTGACTCTTGTAATCAGGAGGAGCGTGTTTTATGTATTGAGAGAAAATCCCTGTGTGAGGgctattttttcttcttctaagaGCATGCAAAGCTCTCATAACATTAATCCAGATCCCTtggagcaagagagagaagcaaTAGCTTGATGTCTCTTGATGTCTCTTGAAGGTGTCCCTGAGAAACACACCGTAAAATGAACCATTGTGAAGTAACGgcaaaagtgaaataaaacaaactaaaaaaagagagaaactgaaAGTAAACTGACCCTAGATGATGTTACCTGAACTTGAACACTACAATAACTCACAAATAGCAGTTTAGTTTGTCccatttgtgtttgttgttcCTCGGATAAGAGGAACCTGGCACCTGGCTCAGCCAATTACAATGCAGTGCTGCCATCACATGACCCAAGGCCCTGCATTTGATTAGAGGAGCCATAGCATCGCATTGAAGATcttgtatattttaataacGTGTGTATTTTGTGAGTGTGTAGGGTAATAATTATGACACTGCTGTTGCACAGTGCGACAGTGAGTGCGCATATCGTGTGCTTTAGTtacagtgtgttggtgtgtgtgtgagtgtgagtgagtgtgtttatctgtgaGAGAGCATTGTACCTGAGTGAATGTGAGTTAGACTGtttcaaaaccaaaacacaaaaaacgaGCGAATatcaaaaagtgttttttttatcgcTTTCATTCAATAtagaatataattatatatgaatattcagtaaaattatttctagatgtccttttcttttttcaagaTGTAAAACACCATATCTGTTTTTAgaccatttttttctgcttttcttttctgtgcTTTACAAAGAGCTGACCCTGTTTCTTCTTTGTACTGTAAGTTAATTTAATACTTTGTATTTCATTTCACGaaggttttctgttttattttgaccCCTAGTCATTCCTCATTTCCCAGGAGTCTCCACTCtccatgtatatttttatagctCCTTGTACAATGATGTAGTTTTGAAGCTAGACCTCGTTTTGTGAAAGTGTTGAGGTAGAGGCACAAtctgagaagtttttttttttttaatgtgcaaagacactttcttttttacaaaaaaaaagaaaaaaagaaagagggtgGGGGTAAAGAAAAGAATGCCAGAGCTGCCtatgaaggaaagagaaaagatgaacagacagaaGTGCAGGGTAAAGACAAAAAGTGATGGGTGGGGGGGGGATCCTCGAAGGAGGTCGTCAGGATGGGGGAGGATGAAGGGATGGAGGAACACAGAAGGAGAGATGGAGCAATGGAGGTGGGTTTTTAACAGACTCTTGAAAGAGGTTGTGTGAAACAGGGGCTTGGGAAATGCAGGATTCTCAACTACACAGATGGAAAAGAAAGGGGATTCACTCGTTCTGTCTCTCAGTTGGAGAGATGGAAATAGGCTTTCGTACACCTGCTCGTACTTTTCTGAGGTGGAAATATTTGAGGCTCAGTTCAaattctttcactctctcacaaCACATCTTAGTATaatacaacacatacacacacacattccacagctTCAGAAAATGAGAATGCACTTGAAAAGGCACACAAgtctttcaacacacacacacacacacacacacagacacactgagtaCACAATCAAAATCCATTCTGGATGTCCGCATAGACGCTGATTACCTGAAATGAATTCTGATTggactctcacacacaaacacacatgcacacacattcagattACACCCATGCATTCCAGGactaaagaacacacacaccatgtgtgTGTCCGATTGTGCCAACGAGAGTCTCATATTTTCAGAATGTGCTCTTTTACATTGCTGTGTGTGCTGACGCTAGAAGATGGTCGTTAAGGTAATGTACGCTACTGCTCGTGTTACAGTTAATCAGTATATCAGGTTTCCTTACTTTATGTTCAAAGCTGCATTGAGACAGaggacctcacacacacacacacacacacacacacacacacagccaaatcCTTGAACCTTCAGGCCTTGCACCACATTGCCAGTGTGTTTAGTGCTCAAGGCGAGACTTGTTTAGAACCCGGATATGAAAATTACAGAGTTTTTGTACGAGTGTGTCAGAGTTGATCTGGTGTAACACTGCAGCAAGTGAACAACATTGTTTTGGTGTCATGTCAATATTCTCTGTTAAATCTTCACAATCAAGTTGTCAGTGTTGCTTTGTTGTTAAGTGACAAATAAGTATGGTGCATTTATTTGTTGGTCAGCTTTCAACGTTTCTGTTCATTAAATCCTGATTTTCGTAAGCCATGTTTCTTTCCTGTGGATGTGGactcatgagtgtgtgtgtggtgtacacacacacacatggaaacCCCAGCATCTGAGGACTATTCAGTGGCCAAAAGCTGGTCGAAGCTTATTGAAGAGTCTTATCGAACAATGCGGCCTCCTGAACGCAGAAGACACCTCTGGAAATACGAACATGTCTGGACTTTGTTTTTCCATGTTGttacatttctgtgtttttcctttcagCCTTTCTTCATGCGCTTGCTTTCAGCCATGGATGCTGAGACCTGTGTTTTGCaggcagacaaaaaaaaagaaaaggaatcaagaggagtgtgtgattttttGTAGAGAACGCTTCAGTGTGTGCGCGTATACATGTTTCTCTGTGCCAATAGCCAGCAAGTGACGGCCATTTTAAGGACCTCCGCTCCTCTCCTGTTGCTGTGTTGAGACGTTTGTGGGACactgcatttgtgtgtgagatgttttcttttctgtgttcatccttccatccttctctcccactctcaccactccctctctttctttccttgctTTCCCTCCACCCCATACACACCTCTTAGAAAGAGAGGTTAAAAAACTAGTACATTCCTTTGAAGaaatgttgattaaaaaaattgcaaaatttgTTTAA

Function

symbol description
efnb3b Predicted to enable ephrin receptor binding activity. Acts upstream of or within rhombomere boundary formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including axis; central nervous system; forebrain neural keel; immature eye; and sensory system. Orthologous to human EFNB3 (ephrin B3).
efnb3 Enables ephrin receptor binding activity. Acts upstream of or within ephrin receptor signaling pathway. Located in plasma membrane.

NR:

description
PREDICTED: ephrin-B2-like

GO:

id name namespace
GO:0021654 rhombomere boundary formation biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936981.2 True 5473 mRNA 0.45 5 12795941 12861217

Neighbor

gene id symbol gene type direction distance location
wrap53 wrap53 coding upstream 7716 12777177 ~ 12788225 (+)
gigyf1a gigyf1 coding upstream 28037 12742257 ~ 12767904 (+)
epoa epo coding upstream 62463 12718253 ~ 12733478 (+)
LOC113540507 LOC108267598 coding upstream 79209 12712841 ~ 12716732 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding upstream 125400 12508874 ~ 12670541 (+)
serpinh2 LOC108267141,LOC108412061 coding downstream 89852 12951069 ~ 12976437 (+)
dnah2 dnah2 coding downstream 119632 12980849 ~ 13115167 (+)
kdm6ba kdm6b,LOC106608825 coding downstream 254999 13116216 ~ 13198549 (+)
trip6 trip6,LOC103041331 coding downstream 371417 13232634 ~ 13242400 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding downstream 384768 13245985 ~ 13251814 (+)
LOC113540557 NA non-coding upstream 23119 12768585 ~ 12772822 (+)
G63242 NA non-coding upstream 437693 12357832 ~ 12358248 (+)
G63241 NA non-coding upstream 438260 12355550 ~ 12357681 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 546153 12248663 ~ 12249788 (+)
G63061 NA non-coding upstream 791718 12003990 ~ 12004223 (+)
LOC117596991 NA non-coding downstream 61653 12922870 ~ 12926987 (+)
G63685 NA non-coding downstream 258251 13119468 ~ 13119677 (+)
G63696 NA non-coding downstream 274442 13135659 ~ 13135860 (+)
G63666 NA non-coding downstream 337790 13199007 ~ 13199862 (+)
LOC117597082 NA non-coding downstream 397657 13258874 ~ 13267034 (+)
si:dkey-112a7.4 LOC108268066 other upstream 500808 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1090605 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1190711 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2132530 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2300471 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 345440 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 414245 13275462 ~ 13285834 (+)
G63903 NA other downstream 557160 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 607335 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 697406 13558623 ~ 13562266 (+)

Expression


Co-expression Network