zgc:136930 (LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002)


Basic Information

Item Value
gene id zgc:136930
gene name LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24121553 ~ 24127236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936985.2
TCCATTTTCTTCATATTGTGCTTGCTCCAGTGATCCACAACTGTCTATAATGGCTATGTCTTACTCATTGTCCTCTTCCAGGCTGTCTGGTCTCTCAGCAGCTGGTGGTGGTGGAGCCAGATTAGGGTATGGTGGTGCTGGAGCAGGTCTGGGGCTTGGTCTGGGTCTGGGCAgtggtgctgctgctggagcTGGGTTTGGTCTGGGCTCTGGACTTGGTCTGGGCTCTGGACTAGGTCTGGGCTCTGGACTAGGTTTGGGCTCTGGACTTGGTCTGGGCTCTGGACTTGGAGCAGGACTGGGCTTGGGTGCGGGTGGAGCAGGGTTGGCGCTGGGTGGTGGCGGAGGTGCTGGAGCACTAGTTGCAAGCCCGGCATTTGCCATGGGTCGCACCATCGCAGCTGGCGGGCTGACTGCAGGTGCTGCTCTGGCTGGTGGTCCTGCTCTGGGCCCAACCGTGGCTCCCATCCTATCTCGTGCAGCTGAGAAAATCACGCTGTCCACCCTGAATGACCGCTTCTCTGTGTACATGGCCAAAGTGCGTGCACTGCAGCAGGAGAATGCTACACTGGAGGCTAAGCTGTCCCAACTGACCGGTGGCACTGACATGTCCCCAGAATCGTCAAGCACTACTACGGTGGAATACGAGACCCAGCTGAACGAGTATCGCACCACTCTGCAGAACCTCACGCTTGACACCATCAAACTGGAGATAGAGCTTGACAATGTGCGTGGCACCGCCCATGAGCTTAAGGCCAAgcttgACTTTGAGCAAGGGGTAAGGTTCCAGCTTGAGTCTGACATTGCTGCCATGAAAAAGGACATTGAACTTGCATCTGACCTAAGAATTGATTTGGATGCAAAGTTCTCCAGCCTTAAGAATGAACTGGACTTTGTCACCAAAACACAGGAAGAGGAGCTCTCATCTCTGCAGTCCAAACTGGGCACAACGACCATGGATACCTCTGTCTCCATGATTGAAGTGGACACTGGTAAGTCCTTTGACATCTCCTCAGCACTCAACAAGATGCGAATGGAGTATGAGAAATCTgtccagcagcacagagaggaaGCCGAAGCCTACTACAAACTCAAGATGGATGAAATACAGACGGCTAATGTTAAGAGCACAGAGGCTGTGTCATCCACCAAAGCCGAGATTGCAGGAGCCAGGAAGGAGCTACAGACGCTCGGGTTAGAGTTACAGGGCCTTGTCACACAAAACATGGCCCTGGAGCAGAGCCTGGCAGAGGCTAATGCCCAGTCCAGCGTGGGCGTGGCTGAGTACCAGGCCCAGATCGCCAGTCTCACGTCTGCCATCGAGGCAGCTAAAGCTGACCTTCACAAACAGATTCTGGCCTACCAAGAGCTGCTAGACGTCAAACTCGCTCTAGATGTCGAAATCGCCACCTACAGGAAACTCCTGGAGGGAGATGACTTCAAaCTGCCAGAATTTACAGAGTCGTCCTACACTTTCTCAGCTGGCGGAGGTGGAATTCAAGTCAAAGAGATAATCACATCACACACAGAGACTTCAATCATCAGTGATGCAGACACTGAATCTTCTTGAATGCCAAGGGATTGTCTGGGAGTTTATTTCACGGACAACTCCCCTCATTGTTATTCCAATAAAGCTGAATTCCAAATA
>XM_034303446.1
TCCATTTTCTTCATATTGTGCTTGCTCCAGTGATCCACAACTGTCTATAATGGCTATGTCTTACTCATTGTCCTCTTCCAGGCTGTCTGGTCTCTCAGCAGCTGGTGGTGGTGGAGCCAGATTAGGGTATGGTGGTGCTGGAGCAGGTCTGGGGCTTGGTCTGGGTCTGGGCAgtggtgctgctgctggagcTGGGTTTGGTCTGGGCTCTGGACTTGGTCTGGGCTCTGGACTAGGTCTGGGCTCTGGACTAGGTTTGGGCTCTGGACTTGGTCTGGGCTCTGGACTTGGAGCAGGACTGGGCTTGGGTGCGGGTGGAGCAGGGTTGGCGCTGGGTGGTGGCGGAGGTGCTGGAGCACTAGTTGCAAGCCCGGCATTTGCCATGGGTCGCACCATCGCAGCTGGCGGGCTGACTGCAGGTGCTGCTCTGGCTGGTGGTCCTGCTCTGGGCCCAACCGTGGCTCCCATCCTATCTCGTGCAGCTGAGAAAATCACGCTGTCCACCCTGAATGACCGCTTCTCTGTGTACATGGCCAAAGTGCGTGCACTGCAGCAGGAGAATGCTACACTGGAGGCTAAGCTGTCCCAACTGACCGGTGGCACTGACATGTCCCCAGAATCGTCAAGCACTACTACGGTGGAATACGAGACCCAGCTGAACGAGTATCGCACCACTCTGCAGAACCTCACGCTTGACACCATCAAACTGGAGATAGAGCTTGACAATGTGCGTGGCACCGCCCATGAGCTTAAGGCCAAgcttgACTTTGAGCAAGGGGTAAGGTTCCAGCTTGAGTCTGACATTGCTGCCATGAAAAAGGACATTGAACTTGCATCTGACCTAAGAATTGATTTGGATGCAAAGTTCTCCAGCCTTAAGAATGAACTGGACTTTGTCACCAAAACACAGGAAGAGGAGCTCTCATCTCTGCAGTCCAAACTGGGCACAACGACCATGGATACCTCTGTCTCCATGATTGAAGTGGACACTGGTAAGTCCTTTGACATCTCCTCAGCACTCAACAAGATGCGAATGGAGTATGAGAAATCTgtccagcagcacagagaggaaGCCGAAGCCTACTACAAACTCAAGATGGATGAAATACAGACGGCTAATGTTAAGAGCACAGAGGCTGTGTCATCCACCAAAGCCGAGATTGCAGGAGCCAGGAAGGAGCTACAGACGCTCGGGTTAGAGTTACAGGGCCTTGTCACACAAAACATGGCCCTGGAGCAGAGCCTGGCAGAGGCTAATGCCCAGTCCAGCGTGGGCGTGGCTGAGTACCAGGCCCAGATCGCCAGTCTCACGTCTGCCATCGAGGCAGCTAAAGCTGACCTTCACAAACAGATTCTGGCCTACCAAGAGCTGCTAGACGTCAAACTCGCTCTAGATGTCGAAATCGCCACCTACAGGAAACTCCTGGAGGGAGATGACTTCAAaCTGCCAGAATTTACAGAGTCGTCCTACACTTTCTCAGGGAGTGCCCCGCCCAAAACCAGCACGCCCCAGGACTCACCCCATGTCTCCATGGAAATACACACTAGATACATCCCCAAAGGCAAGTCCTCTTCAACCACATGCCTATAGCTGGCGGAGGTGGAATTCAAGTCAAAGAGATAATCACATCACACACAGAGACTTCAATCATCAGTGATGCAGACACTGAATCTTCTTGAATGCCAAGGGATTGTCTGGGA

Function

NR:

description
PREDICTED: thread biopolymer filament subunit gamma-like isoform X1

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936985.2 False 1648 mRNA 0.53 9 24121553 24127236
XM_034303446.1 True 1701 mRNA 0.53 10 24121553 24127179

Neighbor

gene id symbol gene type direction distance location
LOC113540619 NA coding upstream 97388 24021065 ~ 24024165 (+)
LOC113540051 NA coding upstream 104810 24013856 ~ 24016743 (+)
mycb LOC108268289 coding upstream 470920 23648271 ~ 23650633 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding upstream 480084 23614440 ~ 23641469 (+)
otulinb LOC108268091 coding upstream 513352 23594961 ~ 23608201 (+)
ccr9a LOC108267400 coding downstream 7440 24134676 ~ 24136808 (+)
LOC113540392 NA coding downstream 17846 24145082 ~ 24148968 (+)
si:dkey-154p10.3 LOC108267397,LOC107736657 coding downstream 34542 24161778 ~ 24170467 (+)
LOC113540614 NA coding downstream 43410 24170646 ~ 24174507 (+)
opn4.1 opn4m2 coding downstream 48022 24175258 ~ 24176754 (+)
G69966 NA non-coding upstream 37335 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 111693 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 178481 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 198857 23921800 ~ 23922696 (+)
G69736 NA non-coding upstream 263982 23855075 ~ 23857571 (+)
G69987 NA non-coding downstream 11399 24138635 ~ 24138888 (+)
G70129 ccdc24 non-coding downstream 439009 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 439764 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 443412 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 447100 24574336 ~ 24574570 (+)
G69971 NA other upstream 11664 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 15330 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 801210 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1469106 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2359252 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 731790 24859026 ~ 24871263 (+)
tnr tnr other downstream 1580591 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1769781 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 2088828 26216064 ~ 26224038 (+)
G71385 NA other downstream 2101528 26228764 ~ 26229191 (+)

Expression


Co-expression Network