sb:cb1058 (LOC108267120)


Basic Information

Item Value
gene id sb:cb1058
gene name LOC108267120
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16752137 ~ 16755407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936986.2
TCTGTTCAGAGTGCTGTGTGATGGTAGGTTTCAGTCATACACACAATTACATCTTGGCACGAGTCACAGTTCCAGCACGACTAGGCAGAGTCAAGGTCAATGTGAGGCTGGAGCTTCTCTTATCTATCAGGACACTGGTACTACCACATAGATACAGGGACACATGGATACGCCAAACACGCACGCAGGCACTGGACTTTGAACAGTGTCATGCTGATGAGGTGATCTGCACAAGAGATATATAATAAGTACATACCAATAGCCTTCAGAGCTTTCTATGCATCTTTGATATCAGGCTGAGCGCTTCTACCAGACTATTTACCATTTGTTATTTCTGAGATCATAGACAAAACAGAACATTGTTTTAACATCTCGCTTCCTGTCTACTTCTTCCCTCAGTCTACAGATAAGTGATAACCTCAGTCACTTGGAAAAATCATGACAATCGGAAAAAGCTCCAAGAAGCAAAAGGCTCCTCGGGCTCCTCCTTTCCTAGACCGGGCCAGTGGATTCTATGGACGTTTAGATGAAATAGAAATAGAGTTCAGGACAGAGGCGCAGATCACAGAGAAACAAGAAATGAAGAACGGAGAGCTGCCAGATGATCAGGAGCACTGTGTGTTAGATTTCAGTGAGGGCATGATGGAAGACGATGGGACCACCCTGCTGAAGAGGAAGCCAAGCCGACTGAGCCGGCGCTGGAGCAGGAAAAGCTCTAGGAGGACCAAGTCTGATAAATCGTCCCTGGAGATAGACAGCCAAAGGGCTGAGACTGAGGTGGCTCCTTCTATTAACCCGAGCGTGGACGTGCACTTAGAAACTCAGCCTGAAACAGGATCAGGCAGCAGAGCTCCAGAACCCATGCTAATCCACTTCTCCATAAGAGAGGAAGCTGATGATCAGAAGCTTATTTCTGAAGGAAAGGAGAGACAAAGGGAGATGAAGGGCAAGAGGAGACAAGGAGAGGTGGAAGGGAAAGCAGATGTAGAGAACATGAAGGTTGTTAAAAGGAACTCTCTTAGGAATTATCACAAGgttttggaTAAAGCATTCCGACGAGGATGGGAGACCTTCATTGCTAACTTGTACAGCGTGACCCTCTCTCCTGCTCCCTCCTCTGTGTCTTCACCAAGCAAGTCTGAAATGGACAGGAAGGCTGCTCTTGCAGATTTTAGATAATATTGAATTAGAGgctgatttaatttaaatataaattatacatttcagATGATAATTGCCTGAAAATGTGTTCATGtagtaattattacatttattttttgtaagctgtatttatatttgatttatctCCACCAGAATTatctttgcttgtttgttttttttaaatgttactacAGTATCTAACATGGATCTTGTTTTAGGATGGTTTGTGTTTATAATCTGAAAAAGCAAGATCAATAACTTGAAAGTGCCTGTGAGGTTGTAGTTTTTGTTCTGACTTGGGTGCAGGACATGGTGAATTATGTTACTGCTCAATAAGCTTTTGTCCCACAGAACAAAACGATCTCACAAAACATAATGGAATCATTTTAGGACTTGTTATGAACGTTGTAAAACTGATTGAGCTGAGAACAGTATTATGGAGGCACAGGTCCTTGATGTAATTTGTCTTTGCTAATGGGCAATCTGCCATGACCATGGGACTAAAACTCCAACACTGGGAGCTCATATCTTCCTGGCTTTGACGTCCATGACTGAGCCAGCTGACTGAGTTATTTATATTGATCATAAAACATTTGTAAGGAATTAATGAACTTATAAGATCAGGACTat
>XM_026936987.2
tgtgtgtgaagtgtgctGAGGGagtactgaacacacacacacacacacacacagagccaatcCCAGAGAGAGCACCCAGCAGTCTACAGATAAGTGATAACCTCAGTCACTTGGAAAAATCATGACAATCGGAAAAAGCTCCAAGAAGCAAAAGGCTCCTCGGGCTCCTCCTTTCCTAGACCGGGCCAGTGGATTCTATGGACGTTTAGATGAAATAGAAATAGAGTTCAGGACAGAGGCGCAGATCACAGAGAAACAAGAAATGAAGAACGGAGAGCTGCCAGATGATCAGGAGCACTGTGTGTTAGATTTCAGTGAGGGCATGATGGAAGACGATGGGACCACCCTGCTGAAGAGGAAGCCAAGCCGACTGAGCCGGCGCTGGAGCAGGAAAAGCTCTAGGAGGACCAAGTCTGATAAATCGTCCCTGGAGATAGACAGCCAAAGGGCTGAGACTGAGGTGGCTCCTTCTATTAACCCGAGCGTGGACGTGCACTTAGAAACTCAGCCTGAAACAGGATCAGGCAGCAGAGCTCCAGAACCCATGCTAATCCACTTCTCCATAAGAGAGGAAGCTGATGATCAGAAGCTTATTTCTGAAGGAAAGGAGAGACAAAGGGAGATGAAGGGCAAGAGGAGACAAGGAGAGGTGGAAGGGAAAGCAGATGTAGAGAACATGAAGGTTGTTAAAAGGAACTCTCTTAGGAATTATCACAAGgttttggaTAAAGCATTCCGACGAGGATGGGAGACCTTCATTGCTAACTTGTACAGCGTGACCCTCTCTCCTGCTCCCTCCTCTGTGTCTTCACCAAGCAAGTCTGAAATGGACAGGAAGGCTGCTCTTGCAGATTTTAGATAATATTGAATTAGAGgctgatttaatttaaatataaattatacatttcagATGATAATTGCCTGAAAATGTGTTCATGtagtaattattacatttattttttgtaagctgtatttatatttgatttatctCCACCAGAATTatctttgcttgtttgttttttttaaatgttactacAGTATCTAACATGGATCTTGTTTTAGGATGGTTTGTGTTTATAATCTGAAAAAGCAAGATCAATAACTTGAAAGTGCCTGTGAGGTTGTAGTTTTTGTTCTGACTTGGGTGCAGGACATGGTGAATTATGTTACTGCTCAATAAGCTTTTGTCCCACAGAACAAAACGATCTCACAAAACATAATGGAATCATTTTAGGACTTGTTATGAACGTTGTAAAACTGATTGAGCTGAGAACAGTATTATGGAGGCACAGGTCCTTGATGTAATTTGTCTTTGCTAATGGGCAATCTGCCATGACCATGGGACTAAAACTCCAACACTGGGAGCTCATATCTTCCTGGCTTTGACGTCCATGACTGAGCCAGCTGACTGAGTTATTTATATTGATCATAAAACATTTGTAAGGAATTAATGAACTTATAAGATCAGGACTat

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578097 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936986.2 True 1791 mRNA 0.42 2 16752820 16755407
XM_026936987.2 False 1474 mRNA 0.42 3 16752137 16755407

Neighbor

gene id symbol gene type direction distance location
b3gat3 b3gat3,LOC107750592,LOC107691906 coding upstream 2013 16746698 ~ 16750124 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding upstream 6780 16736067 ~ 16745357 (+)
mark2b mark2 coding upstream 37040 16675435 ~ 16715097 (+)
krcp LOC108267668,LOC108434626 coding upstream 77910 16669457 ~ 16674227 (+)
cskmt mettl12 coding upstream 96253 16653821 ~ 16655884 (+)
batf2 batf2 coding downstream 16992 16772399 ~ 16776829 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding downstream 21487 16776894 ~ 16804016 (+)
zgc:101765 LOC108267536,LOC108434636 coding downstream 55993 16811400 ~ 16818534 (+)
exoc6b exoc6b coding downstream 69801 16825208 ~ 16920946 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding downstream 184054 16939461 ~ 16960809 (+)
G65654 NA non-coding upstream 47 16751860 ~ 16752090 (+)
G65644 NA non-coding upstream 22785 16723895 ~ 16729352 (+)
G65643 NA non-coding upstream 74771 16676529 ~ 16677366 (+)
G65601 NA non-coding upstream 157680 16592447 ~ 16594457 (+)
G65580 NA non-coding upstream 174400 16569687 ~ 16577737 (+)
LOC113539905 NA non-coding downstream 2820 16758227 ~ 16763461 (+)
LOC113540740 NA non-coding downstream 5112 16760519 ~ 16760583 (+)
LOC113540741 NA non-coding downstream 5342 16760749 ~ 16760819 (+)
LOC113540745 NA non-coding downstream 5574 16760981 ~ 16761107 (+)
LOC113540743 NA non-coding downstream 5859 16761266 ~ 16761338 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 381180 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 432971 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 712153 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2093201 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2482797 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 580090 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 854085 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1244751 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1358026 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1441905 18197312 ~ 18208564 (+)

Expression


Co-expression Network