nrd1a (nrd1a,LOC108268052)


Basic Information

Item Value
gene id nrd1a
gene name nrd1a,LOC108268052
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26719230 ~ 26735596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936992.2
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaactagCTGTAACACTGTAATGACACACTGTTTAACGGAATAACGGCGCTCGTGTATAAACCGGAAACAATGTGACATGCTAAGAAACATTCTGACGCGCACGTGTTGGAACCGACTTCCGCTCACGCGCACCGGTCAGTGCGCACTTCTCCGTGTTGAGATGCCCAATAAGTCCAAACAGAGTGTGGGGAGCGTCCCGGCTCAGAGCGCCGCTCCGGACCGAGGAGAACCGATCCCAGGACCGGCACAGCAGGAGAACCCAGGggatgatgacatcatcaaatcACCCAGTGACCCCAAACAGTACAGgtaCATAGAGTTGAATAATGGCCTTCGTGCTTTGCTGATCTCAGACTTCAGCAGCTCTGAAGGGAaatcagatgatgatgatgatgatgatgatgaaaacgaggaagaagatgaagaagaggaggaggaggaagaggaggaagatgattCAGGAGAGGGAACAGATGATGGGTCagaggaagaagatgatgatgcaggcagtgaggatgaggaggaggaggtgaagaagaagaagaagaattcagAGAAACAGTCAGCAGCGGCCCTGTGTATCGGTGTGGGGAGTTTCAGCGACCCTGAGGACCTGCCGGGACTCGCGCATTTACTGGaacacaTGGTGTTTATGGGCAGTGAGAAATATCCGCGTGAGAATGGATTTGACGCGTTCCTGAAGAAACATGGCGGCAGTGATAACGCCTCCACCGACTGTGAGAGGACTGTGTTCCAGTTCGATGTGCAGAGGAAGAGATTTCGAGAAGCCCTCGACAGATGGGCTCAGTTCTTCATCTCTCCTCTCATGATCAGAGACGCCAtagagagggaggtggaggccGTTGACAGCGAGTATCAGTTAGCGAAGCCATCGGACTCGCACCGTAAGGAGATGCTGTTTGGCAGTCTGGCTAAACCTCATCACCCCATGGCCAAGTTCTGCTGGGGGAATGCACAGACTCTGAAGATGGAGCCGAAGAAAAACAAGATAAACGTGTACAAGCGTCTGAGAAAGTTCTGGAAGAGACACTACTCCGCTCACTACATGACGCTAGCCGTGCAGTCCAGAGAGACGCTGGACACTCTGGAGCAGTGGGTCAGAGAGATCTTCAGCAACATCCCTAACAATGGTCTGCCCAGACCTGACTTCTCTCACCTGCTGGAGCCGTTTAACACTCCAGCCTTCAACAAACTGTACCGAGttaTACCTGTGAGAAAAGAACACTCCCTCACCATCACATGGGCATTGCCTCCTCAGGAGAAACACTACAGggtGAAGCCGTTACATTATCTCGCCTGGCTCATCGGTCATGAGGGAGTCGGCAGCATCCTGTCTCTTCTCCGGAAGAAgtGCTGGGCGTTGGCTCTGTATGGTGGTAACAGTGAGACTGGGTTTGATCAGAACTCCACCTACTCCATcttcagcatcagcatcacacTCACTGACCAAGGCTTCCAGAACTTCTACCAGGTGGCTGATCTGGTGTTTCAGTATGTCAAGATGCTGCAGCGTCTCGGCCCTCAGCGCAGAATTTATGAGGAAATCCAGAAGATTGAAGCTAACGAGTTCCACTACCAGGAACAGACGGATCCGATCGAGTATGTGGAGGACGTGTGTGAGAACATGCAGCTGTTTGCTAAAGAGGATTTCCTGACAGGAGATCAGCTGCTGTTCGAGTTTAATCCTGAGGTGATCGGCTCTGTCCTAAATCTCCTCACTCCAGATAAAGTGAacttgctgctgctgtctcCGGAACATGAGGGTCTCTGTCTTCTGCAGGAGAAGTGGTTCGGCACTCAGTACAGTGTTgaggATATCGAGCAGCAGTGGAGAGATCGCTGGGCCTCAGACTTTGAACTAAACTCAGACTTCCACCTTCCTGCTGAAAACCAGTTCATTGCAACGGACTTTACGCTAAAACCCTCGGACAGTGAGGACACAgagtttcctgttaaagtcgcCGACACTGACCGAGGGTGTGTGTGGTACAAGAAGGacaacaaatttaaaatccctaaagcctACGTGTGGTTCCATCTCATCTCCCCGCTGATTCAGAAGTCCCCTAAGAATCTGGTTCTGTTTGACGTGTTTGTGAACGTGCTGCTGTATAACGTGTCGGAGCCAGCGTACGAGGCTGACGTGGCTCAGCTCGAGTACAAACTCACAGCGGGGGAACACGGACTCGTCATCAAGGTCAAAGGGTTCAACCATAAACTAcggCTGCTGTTTAACCTGATCGTGGATCATCTGGCTGATTTCTCAGCACCGCCGGATGTCTTCAGCATGTTCACAGAGCAGCTGAAGAAATCTTACTTTAACATCCTGATAAAGCCAGAGAAACTTgccaaAGACGTGCGCTTGTTGATCCTGGAGGCCGAGCGGTGGTCAGTGATGCAGAAACACCAGGCCGTGGTGGAGGGGATCAGTGTGGACGAGCTTATGGAGTTTGTGCACAGCTTTAAGGAGGAGCTTTATGCTGAGGGACTGTTGCAGGGGAACCTCACTCGCACGGAGGCCGTGGACTTTCTGAACTACCTCACACAtaaaCTACAGTACAGGAAGTTGTCAGCAGAAGTTCCTGTTCAGTTCAGGGTGGTGGAGCtgccacagacacacagtgtgtgtaaagtgaaaTCACTCAATAAAGGAGACGCGAATTCAGAAGTCACTATTTATTACCAGTCTGGAGCAAAGAACCTGCgagaacacacactgatggaGCTGCtggtgatgcACATGGAGGAGCCATGCTTCGACTTCCTCAGGACAAAAGAGACTCTGGGGTATCACGTCTACCCCACCTGTAGAAACACTTCCGGCATCCTCGGCTTCTCCATCACCGTGGAGACGCAGGCGACCAAGTTCAGtacGGAGCATGTGGAGATCAAGATGGAGGAGTTCCTGCAGAGCTTTGGTGAGACGCTGGCGGCGCTGACTGATGATGCATTCAGGAGTCATGTGACCGCGCTGGTGAAGCTGAAGCAGTGTGAGGACACACACTTAGGGGAGGAAGTGGAGCGACACTGGAACGAGGTCATCACCCAACAGTATGTCTACGACCGACTCCACCAGGAGatcGAGGCTCTGAAGCTGATCAGTAAAGCTGAGCTGATCGACTGGTTTCTGCAGCACAGATCTCAGATTAGCAGAAGACTCAGTGTGCATGTGGTGGGATTTGGGTCACAGGAGAACGACCCCCCAGCTGAGGAGGAACTGGAGACGTCTCAGTACGGTGAAGTGTCCAAACTGGTGTTCCTCTCTCCGTCACATACACTCCCCTCCGACATCATCATCACCGACATcagagctttcacacacacactcacactgtatcCATACCACAAAGTCCTCCAGTAAACACTCGCAGTGTACATACATGAACCTCAGCTCTGAATGCACACACTTGGCTGTGAGGATGCTTGTCCTGACAAGGAAAAGTGCTACTTTACAACAAAGATTTTTACTTtaaaccatctctctctctctctctctctctctctcagtatattTGCTTTGTGTTGCTGAGTGATGTGGTACATGCTGTCCTGTATAGTGTTTATTCACATCATTATagaaagtttttaaaatgattagaaAATGTTAAGTAAAATCATGAACATGGTAAATTTAATCCTCATTGCTACATCTCATCTGATATGTGTagattgtgtagtgtgtaatgaaGTCCAGGATTTTTTTGGACTGACTTTTATTGGGtttaattttaaacacagattaaCAAATCACAAGTTAACACCTTGAGCTGGGATTTGTTCTGATTGTCCATGACGGATTTCTCTCTCTGATCAACTGAACAGCAGCCAGGTTGCTCTTGGGGtcaaacatttttcataaaaaacaCGGATAAAGTTTATAACGGTTGCTTTGCCTCCTGTCACTGAACCACTTATGTGAAATATTAGAGATGTTTGAGCTCCAGAGGAGACATGGCGCTGACGCTTGACGGAAATGAAGTCACTGGATTCCAGCTGAGAGACTCAGGAGTTAGAGAGAAGATCAGATGTCCTGATTTAATCTGAATAAGTGAATGATGCTTCTCCTGCTTTGCTGCTGTGTTCATTAAACTTTTACTAACACTAA

Function

symbol description
nrd1a Predicted to enable metal ion binding activity and metallopeptidase activity. Predicted to act upstream of or within proteolysis. Orthologous to human NRDC (nardilysin convertase).

NR:

description
PREDICTED: nardilysin-like isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01411 NRD1; nardilysin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936992.2 True 4179 mRNA 0.49 33 26719230 26735596

Neighbor

gene id symbol gene type direction distance location
pdcd10b pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411 coding upstream 22906 26689037 ~ 26696324 (+)
ptx3b NA coding upstream 31216 26685510 ~ 26688014 (+)
klhl6 klhl6 coding upstream 45219 26666239 ~ 26674011 (+)
LOC113540735 NA coding upstream 55148 26663971 ~ 26664082 (+)
pak2a pak2a,LOC108267562,LOC108411195,LOC107659428,LOC107706409,LOC107557297,LOC107738196,LOC107684413 coding upstream 55515 26643100 ~ 26663715 (+)
ifi44c2 NA coding downstream 16040 26751636 ~ 26764604 (+)
apoda.1 LOC108267187 coding downstream 31388 26766984 ~ 26770244 (+)
gadd45bb LOC108267448 coding downstream 80465 26816061 ~ 26818849 (+)
sec62 sec62 coding downstream 88090 26823686 ~ 26831573 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding downstream 111295 26846891 ~ 26854149 (+)
G71519 NA non-coding upstream 51102 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 168204 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 254916 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 424248 26294755 ~ 26294982 (+)
LOC117597184 NA non-coding upstream 492815 26225431 ~ 26226415 (+)
G71550 NA non-coding downstream 48976 26784572 ~ 26786560 (+)
G71557 NA non-coding downstream 72461 26808057 ~ 26856605 (+)
G71819 NA non-coding downstream 307107 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 338245 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 460405 27196001 ~ 27196373 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 343404 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 426446 26288290 ~ 26292784 (+)
G71385 NA other upstream 490039 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 495192 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 817224 25897017 ~ 25902006 (+)
gng7 NA other downstream 137080 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 649211 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1567255 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1580808 28316404 ~ 28338173 (+)
gng5 NA other downstream 2022949 28758545 ~ 28761451 (+)

Expression


Co-expression Network