ripk2 (ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343)


Basic Information

Item Value
gene id ripk2
gene name ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29576698 ~ 29592827 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937014.2
ATAACGCAGCAATGCGCTCGgatgtgtgtgatatttttgtcgCGTAAGTGCGCACCTGCGAAAAATCCGCAAAGCTGTGATTTTAGGCAAACACACGCCTTAGAGAGGGTCACAttcacatgagtgtgtgtggccaGGAGTGTGATCgggtaacagtgtgtgtgtagaggtgttaTTTTGTAGCTGATTGTGTAAAGACAGTGTTGCGGGGTTTTTATTCGGGGGcgcgaggaggagcaggaggaggaggaggaggaggaggaagagggtgaagaagaaggagaaggagaagaaggagaagtgTTACGCAGATTCGCCTCAAAGTGTCGGTGAAGTCCTGATCTGTCCTTCCGCTCTCTTTGCCCTGGCAGTGACTCAGTGTTTGTTCTCCTGCCGGAATGCCGTTATCTCTGTGAGCGTTCAGCATGGACCAGGCTGGCTGTGTGAACCTGTGCAGTCTGACCAGCACGCTGCCGGTGATTCCGTACCGCAAACTCACCGACCTGCACTACATCAGCAAAGGCGGCTTCGGCACCGTGTTCCGGGCGCAGCACAGCGACTGGCGCACCACCGTCGCCATTAAGTGCTTAAAACTGGACTCCCCGGTCGGTGAAAGGGAAAGGAATTGCTTACTGAAAGAGGCCGAGGTGCTTCACAAGGCCAGGTTCAACCACATCATCCAGATCTTCGGCGTGTGCAACGAGCCCGAGTTCTTCTGCATCGTCACCGAATTCATGACCAATGGCTCTCTGGACGAGCTTCTGCATGAGaaaaaCATGTATCCAGTGGTGGCCTGGCCTCTCAGGCTGCGCATTCTGTATGAAATCGCTCTGGGTGTTAACTTTCTCCATAACATGACTCCTCCGCTGCTCCATCATGACCTGAAAACGCAGAACATTCTTCTGGACGGCGAGTACCACGTGAAGATAGCCGACTTTGGTTTGTCAAAATGGCGGCAGCTCTCAATTAGCAAAGGTTCTGGATCAAAGCCAGCTGAGATGGGCGGCACCGTCATCTACATGCCTCCTGAAGAGTATGAACCCAACAAGACTCGGAGAGCAGATGTCAAACAGGACATGTACAGTTATGCCATCATCATGTGGGAAGTGCTGTCTCGACGGATACCTTTCGAAGATGCTACAAACCCCATGCAGATAATGTTCAGCGTCCTGCGCGGCTCTCGGCCGGACACCGGACTGGACAGCCTGTCAGCGGACATCCCTGGTAGAGAGACGCTCATTAACCTCATGACGTGCGGCTGGACCGCTAATCCCGACGAGCGCCCCTCTTTCCTCAACTGTCTTATCGAACTGGAGCCCATGCTACGGAGGTTTGATGAAATCGATGTCCTGGAGGCAGTGCTGGAGGTCAAAAGGTCAAAATTTATGCGACCATTGAGCAGCGCTTCAACAACGACGGCGAATGTGAAAAGAACAGATAAGAGTCTGAAGGAACAAAACACTCCCTGGCCAGATACCAGCTCTACATCAGGATCAGGGTCGTGCTCCTCCCAGGACACGGATATCTCCCAACCAGGCTACCTTACCATCTCCAATCCATCTCATGCTGGACCATTGTCATCTGTCATGTCCATACCACTGGACACCCCAAAACCTTTAGTGGATCAAGGCTCTCACAACAACCTGAATCCTAATTATCAGACGGCTCAGCTCATCTCGGATTATAGCACCCCCCTCAGACCACACCCGCCTCAAAGTGAGAGCAACCTGCCCATAAACATTCACCCGCTCACCCTACAGGCACATCCACAAGATTTCCTCATGCCATCGGACAGCCAGGGCCCGGCAGCGCGATGGATCAGCTCTCGACGGGAGGAGGTTGTGCGCCAGATGACGGAGGCATGTCTAAACCAGAGCCTGGATGCGCTGCTGGCCCGCGACTTGCTCATGCGCGAGGACTACGAGCTGGTGGCCAACCAGCAGACACGCACCGCCAAAGTTCGCAAGCTTCTGGACACATGCGAGCGCCACAATGAGGAGTTTTGCCGTGTGGTGGTGCGCAAACTGCAGGACAACAAGCAGATGGGCCTGCAGCCATATCCGGACCTTACTTCCCCGACGCCTCCACCGCCCTACAGCGCCGCCAGCGCTCCACCGCTCTCCACCTCCAGCAATAACATCCGCAACATCTTCTGAGCTTTTTAGCTTCCCTTAGATCTGGACACTTGGAATAGAGACCTAAGGGATTTTCCTGCTTTGCTGCTTTTTCATCATTGGGATAAAATTTATTGGCCTTGTACTGGAGCAATTACACTCTCTCCCTGCTGTGGCTTTAGGACTGGACCACTTGTTCTTTTCATCCAGATTATTCCCAAgctttttcagtcttttctgTTGGAGTAAATGTGCGAAAGATTTCTGTCATTTGATCAAGACCAGTGACGTTGTCCTTGCCTTGGAGGGTCATTGAGCAATCCAAATTACACCATCATATCTTCTCATTTTTAGGCTGAACTCATCACTTGTGTTTATAGGACATGAGAATGTTCAATCTGTGAAGGTGACCCAGGATCAGCCAAGCGAAATCGCCAGCACTGTTTTACCACGGCTTGATGGAAACCTCTACAAAGAAACTCGTCTTCCTTTTagctcatgttttatttttacgaTGCGCATCGGTATGAAGTTTTGTGGAGTTTATACACCAGTTGGCTTTGTGATAACTGGATCTCACTTTGGTATTACATGCTGTGCTCACAAGGATGCAAGAAAATTGGTGGTTTGTTATAGGTATGTTTGCAGGTAAATGATTTTTAAGTTAAATGTACGTATAGACCCGTGTGTCGAAGCAAAGCTTGTTGTGAGTTTATAGATTTTTAGCACTGGATCATACAGCTCTGGATATAACTGACAACTGATTCCTTCACCTGATCCTCCTTAACATTGGAGTCAATAAGTAAAGCCCCACCTTCCACTTTCTCCTACATTCTATGTCAGAGTATgttgcatataaaaaaaaaaaaaattgagcatAGTTTATACATATGTGTATGGTCCTTCTTTCTTACAAATACATCCTTGTGTACGCAGCCTTCTTAGCCTGCTGAACTTCTTAAGGTTGACTGTCCATGATTGCTCACCTGAAATGGCATTCTGTATTTCCTTTTGTGCAATATTTTGGGTGGAGCCCAGAGTGGCCATTTTGGATTACGGTAGTTCACTACATATTACCCACATCGTACGGTTATATTATgatatatagtattatagtaaGGCAATGTACAATACTTCACCTGAAATAATGAACTACTACAGGAAAGGAATGCTAAATCACTAGCATGGGTTAGCATAGGTCATGGTTATGCTAaggcaggggtggacaaatcataattTATTCACTAGCCACCAGGCAAGTCAGTGCTCCAATGTGCTGCTCAGTCCCATGTTACGCTTGTCCAGCTAAAAACCTCAAGTACACCTTGCTGCAGAACCagaagtccagggggtggactgaacctgatccagctcctcctacctgggtGGAGTTAAATCAAAAGTCTGGGGATATGTGTTTCAGTTTGGATAAGTGTGTTTGTTCCGTGCTGTACAACGTTTCATAGGTTAGGGTTAGCCTTATAGGAGGCTGGACACCCCCCTGGACTTCTGGTTCTGCAGTGAGCTGTAACTAATTTAACAGTTTGACAAGTTAATTTCACACATGAGCTATGGGCATTAAGCAGGTACTTGAATCCCTTAGAGAAAAATACTTCCTAGCAACACAGACCTTGTTGTCAGAGTGTGTACACAGTGCAGCAGTTGGAGGGATTCAGAAAAAGGGTAGCCACAGCATCACGGTGCTTAGCGGCACTGAGGAATATATCAAAAATTTGCGCGTGTtatgtttaaacaaacatttctacGGTGACCTGtgagtgcaaaacacattagcaAGCCAGCAAATCTGACAACACATGATCACTAACACAAAATGGAAAGGGTCAGACCTTGTTGAACGTCCCAGAATTCCACGTTTTCACTCTGTTGTCTTGTTAGTCTAGCGAAAACGATTTAACGCAAAGTTACTTATGTGATAATTCTGAGGAGGAATTCTTTCTACTGAATAAGCCGGCTTCCTTTAGGTGTGTTAGGTGGGTTTTCAGGGTTCGCAAACTCATATTAATGTCGTGCGAAGTTGATAGCATCGAAAATAACATCATCTGATAAAAATAAACGTGAATAAAAGCATCCGTAGACTCATTTAGTCCATAGCGCATAATTCCTCTTACTATAAATTGTCCGTTTTCCTTTGCGTCAAAAACAAGCATATGATGTTCAATAAGGGCCGCCCCTTTCCACTATGAgttaatgttgatgtgtttgctgttgtgttttttgtttttcgctgATGTATCGTTTTGTCTTGCTGTCctctttattgttttgttttctgatttgcgGCTGTGGATTTTGGGTTTCCTGTTGGGTTTTCTggtttgctgttgcattttggtttgttaatgtgttttacaCTTGCCTTGCCtatcaaaatgaacattttacttTAGGAGTAGTTAATATGAAGTAGGACTTTTCTTTCGCTGATTGTTGGATGAGACAAATAAGAAAAACTCTGATGACAGTTATAATTAACATGCAGCTGTAAATTAGTGGTGGGTGATATGATAAAAATTATCATATTATAtgatacatatacatactgtagAAATGTGTATCATGATATGTAGCCAGGAAAATcgtttaaaacctttaaaaatgctttaatttgaaaaatataacaaaaaatgccaaaaaataatgtttaaaaaaaatctagattcAGAAAGGTAGGATGTATTAACCTCAAAACAGGTACTTAATGAGTgcattactattatttaaatgtttctttaaaagattttttaacgttaaagttcaaaagttaatatcatttttaaaataaaatggataaataaaaatcaaattttatcattttttaaatataaaaagatttCACGATATCtgcgatatctcagaaaagactacagtgacataatttatcacaatattgatatatCGTCGTATCGCCCAGCACTACAGTGAATGAACAATGGATAGTTTGGATTTGTAAATTTTTCCTCATTCCAGGCgagtgatttgtccaccctgtAAGCCAACAGAATACGGTATTTCTCTGAATTCCCCGACCCAGAGCATGCACGAATCATTATCAAAGCACTGAACCCTGCTACAGGGAATATTTCTGCTACTGGATCTTgagcatttattttcagtacatCTGGCACTCATCGTGTCTGTTTATTGCGACACtgtagaatgtgtttgtgtttacagcaGCGTTATTGCCGCGTGGATTTGGTCTCTATGAGCTACACTTGACCTAACGGGATCTTTTCCCTCATTATGTCAACTGGTTTTGTCGATTGTAGGGTTATAAAAGCTGCTTTTTGCACTGGGTTGCTTCTAAATGGTCACTagtgacttcttttttttttttgtactgctgATGATGGGCTTGCTGAGTTGCTTAGCTTTTTTGTTGGTTAGGTTACACTTTAAGAAAGTAACACTGGGTTTGGAATTCCATCTGCTTTGACTTGGTTCTCAATGGTTCTCATTTAGTATTTAAAGAAGAGAGTAAgtatttgattatttgcatgTTATTAAGCGATGCATAAGACAGTATCATCGGCGTATTTGCGTATTATGTTTGCATTAATATTTTGCAGAGTATTGTGCCAATTTGTAGGCGCTGATCATGAGGCGTCAGAACATCACATTGCAATTGCAATATTGTATCCTGTCTGTAGGGTGAatttaaagacaaaacaaaacaaaaaaaaactctgtgcCAAACTGAACATTGCCTTAATGATATAGATGCTAGGCATTAAATGAAGaggattatttttgtcataacagcattattcctttattttgttGTATCTCTAAAAGTGCCATCTCTTGCCTCTTGCCTTCTTTCTGTAAATCTAAATGCTATCATGAGAAACCGTGTGCACATTACAAACAATGCATAGCCAATGTAGCAATGTACAGGTGTCAGGAATGCGATCTATGTACGTGCTATAGTATGAACGTAATGAGAAACTTCCAGAGAAGTTCtgtgttattaaaatgtgtagcTCTCCTTTA

Function

symbol description
ripk2 Predicted to enable CARD domain binding activity and JUN kinase kinase kinase activity. Acts upstream of or within antibacterial innate immune response; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Is expressed in brain; gill; liver; pleuroperitoneal region; and unfertilized egg. Orthologous to human RIPK2 (receptor interacting serine/threonine kinase 2).

NR:

description
PREDICTED: receptor-interacting serine/threonine-protein kinase 2

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937014.2 True 6131 mRNA 0.43 11 29576698 29592827

Neighbor

gene id symbol gene type direction distance location
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding downstream 46017 29519091 ~ 29530681 (-)
LOC113540703 NA coding downstream 51637 29524989 ~ 29525061 (-)
LOC113540697 NA coding downstream 52011 29524509 ~ 29524687 (-)
LOC113540698 NA coding downstream 52786 29523723 ~ 29523912 (-)
LOC113540702 NA coding downstream 53232 29523394 ~ 29523466 (-)
LOC113539879 LOC108267234 coding upstream 37143 29629970 ~ 29666855 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding upstream 88417 29681244 ~ 29692555 (-)
si:ch211-13f8.1 LOC108267891 coding upstream 100551 29693378 ~ 29705682 (-)
cdc14aa LOC108267888,LOC108411489 coding upstream 139438 29732265 ~ 29748113 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding upstream 173381 29766208 ~ 29794142 (-)
G73423 NA non-coding downstream 36342 29540095 ~ 29540356 (-)
G73327 NA non-coding downstream 256364 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 358540 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 361647 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 380531 29128055 ~ 29196167 (-)
G73439 NA non-coding upstream 14774 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 78360 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 118259 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 120066 29712893 ~ 29713446 (-)
G73459 LOC108267889 non-coding upstream 121172 29713999 ~ 29714410 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 971 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 404777 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 691733 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 784869 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 924273 28648324 ~ 28652425 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 131761 29724588 ~ 29730857 (-)
G73619 blvra other upstream 426679 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1148700 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1180622 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1654233 31247060 ~ 31277249 (-)

Expression


Co-expression Network