LOC113540489 (ponzr1,LOC108267839,LOC108442818)


Basic Information

Item Value
gene id LOC113540489
gene name ponzr1,LOC108267839,LOC108442818
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13443794 ~ 13450823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937015.2
AAAAACAGTATGTGATATGATGAGATGCTGGTGGGATGGGGAACTGGTGGAGACATGTTGCAAGGGTTTTGCGAATCTTTTCAGGTGACATGGGGTGTGTTGATGTCTGAAATTCATCACCTCCTAGCACATATAGATATACTGTTACATATCAGCTCCATCTgtttacactacacacatttcATTCCTTGATGCAGAAAGCAAGTGATTGGGTCTCGGATGGTTCTGACGTTTTATAAATGGGAGGATCACAAACTTCACAATCTCTGTTGATTATGTAAAGAGGCTCGACAATCCTTCACAGAAACGTGTTTTCTTTctcaagaaacaaaaaaaaaaaggaaaaaaagaaggaaaaaaagaaaattaggtTTCATTTTGACTCAGTGCAAGATTTGAAGAGCTGAAAGCCCACAAGCAACGACAAGTTATGGCAGTTCAACAGCAGGTTACCACAGTGGTGTCGCACACAGGATATAGTTCTGGCACATGGACCACAGGCATCTGTGACTGCTGCTCTGACATGAGCACTTGTTGTTGTGCCCTGTGGTGTTTCCCGTGTATGCAATGTCAGACTGCTTCTCAGTTTGGCTGGTGTTTCTGCATGCCCCTTCTGGACCCCTTCTGTCTGACCGTTTCCTGTTGCCTTCGCAGCAAGATGAGAGAGCGCTACAGCATTCATggCTCATGCTGTGATGACTGCTGTACTGTGTGTTTCTGCTACACCTGTGCCTGGTGCCAAATGGCACGTGAAATTAAGATTCGTGCTCGAGCTGGCACTAGTGCCACTGTGATCACTCAGCAGGTTATAGGCTAGCTGATCCTTTGCTGCTTCAAAGTTCAAATGTTAAATCTCAGCATTTACAATTTAATCACTTCAGTGCATATTGTTCACCTTTATTTCACACTGTTCACCTTAAGTTCTGATCACACAATGACAAAagtgaatataaatatacatttctgtTATATTAACCAGTCTTAATGACTTTTGAATATTGCTTTAGCTTTGCAACAATGTTTGTTCCCCTTGCAACAATTTGATAAATAAAGCATATAGCTGCTGTTAAAGCCTT

Function

symbol description
ponzr1 Acts upstream of or within embryonic viscerocranium morphogenesis; nephron tubule morphogenesis; and pronephric glomerulus morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; intermediate mesoderm; optic stalk; and pronephros.

NR:

description
PREDICTED: cornifelin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937015.2 True 1076 mRNA 0.42 4 13443794 13450823

Neighbor

gene id symbol gene type direction distance location
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 7198 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 26933 13399435 ~ 13416861 (+)
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 49622 13391809 ~ 13394172 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 68744 13328033 ~ 13375050 (+)
agfg2 LOC108267520,LOC108442826 coding upstream 116575 13311880 ~ 13327219 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 35713 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 82994 13533817 ~ 13553948 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 113905 13564728 ~ 13569599 (+)
nhsl2 nhsl2 coding downstream 122811 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 196358 13647181 ~ 13684599 (+)
G63901 NA non-coding upstream 26353 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 55840 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 176760 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 243932 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 307934 13135659 ~ 13135860 (+)
G63898 NA non-coding downstream 8539 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 53637 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 119179 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 244826 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 304721 13755544 ~ 13759751 (+)
G63903 NA other upstream 25098 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 157960 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 223935 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1148661 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1738458 11644901 ~ 11705336 (+)
LOC113539889 LOC108267838 other downstream 17729 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 107800 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 254594 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 804921 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1181207 14632030 ~ 14658936 (+)

Expression


Co-expression Network