si:ch211-106h4.6 (LOC108267631)


Basic Information

Item Value
gene id si:ch211-106h4.6
gene name LOC108267631
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23215075 ~ 23230453 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937016.2
TATTAGTCCATACAACTGGCTGTCAGTAGTCTGACCACCCCTGTTGGTGTAATCAGTAGTTGGTTGTTTGAGCTGTAGGCACAGTGCATGTGAGTAAGTGTCAGATGGAAACACTCCTGTGCTGCTGATGCCACTCGCAGCTGCAGATCTACCGGAGTTAGAGCTCCTCAAAGGTGCTGTTTCAAAGTGCAGTTTCAGGATTACTGAGCTCTCTGTGTTGGAAATGGCAACAAGATTCAACGTGTTTCTCGGACTGTTCACAGCCATTCAGATGAGGTTTACCATTGAGGAGCTGTCAAGAAGTGCAGTAACCTGTGCAGAACTTGAGGGCTTTCATGAAATGCAGAGTGCAGCAACAGGTCTGAAAatccaaaaagagaaagagaagagtggGCTGCCCTCCTCTACACAGCCCAGTCATGCTTGGGCCAGTCATATTCAGGAACACGGGCATTACCAGGAACATGGCAGGTCTGGAACTGAACGCAACCCTGAAGTTTTAACTAATAAGAACCATACAAACAGCTCTCACGTCCAGCAAGACGTAGATCATATCTACTACATTTCCAAAATCTACCAGCCCACAGATGCTGCAGGCAAGGACTTATGGGTAAATTTTAAACAGATGGACAAAGGAAAGGTTCATGGAGTCCTTTCCAACACCCACAGACAAGCTTTGACAGTGAACTTGTCCTTTGAGTTTCCTTATTATGGACATTTACTGAGAGAGATAACAGTGACTACTGGTGGTTTTCTCTACACAGGAGACGTGATCCATAAGATGCTAACAGCCACGCAGTACATAGCTCCACTTATGGCTAACTTTGACCCAAGTATTTCCCAAAATTCCACCATCATTTACTCTGATAATGGCACAGCTCTTATTGTTCAGTGGGACCATGTTTACCTCCAGGATGACCCAGATTTGGGCAGTTTCACTTTCCAGGCTTCGTTGCACAGTGATGGCAGGATCACCTTTGCTTACAAAGAGATTCCTGTTGATATCAGTAAGATTAGATCAGAGAATCACCCAGTGAAAGTTGGCCTTTCTGATGCATTTGTGGTGTTTCATAAGATTCAGCAGATTCCAGACACAGATATCCGAAGGAGAACAATATATGAGTACCATCGTGTTGAGCTGTTGAAATCCAAAATTACCAACTCCACTGTCATTGAGTTGCTGCCTCTTCCAACCTGCCTGCAGTTCTCCAGCTGTGACAGCTGTGTTACAGCTCACATCAGATTCAACTGTAGCTGGTGCAGCCGCCTACGAAGATGTTCCAGTGGCTTTGACCGAAATCGTCAGGATTGGGTTGACAGCGGTTGTTTGGATGAGAACCAGAGCTGCAGTGAAACAATCAAACCACATGCTGTAAGCACTGGGTCTACAATCAATAACACCGCAGCATCCACAGCCACAGCCCAGCCCAGCAGATATAGCAGTGTCATCAGCACTGTATCATCCACAAATACTCATCCCACCACCATCTCTGCTGAGCAAGACACAAAGATTGCACTTCCTTTGACTGAAGATAGATCCTCTGAGGCAGAGAGGACAGGCGAGCAAAGTGAAAGGCTGCAGACTGCTCTGCTTGTTAGCATCCTCCTCATCGTGCTGCTGATGGTGGCTGCAGTACTGGCTACAGTCTACATGTATCACCATCCCACCTCCAGTGCCAGCCTCTTCTTCATCGAGAGACGGCCAACACACTGGCCTGTGATGAAATTTCGGCGAGGTTCCGGCCACCCAGCCTATGCTGATGTGGAGGCTATGGGACGAGACCAAGAAGGCTTCATTTTAATAGAGCCTAAGGATAGCTTCATCATTGCAGACCGACGAGAGAGCTCAATTACAACAGACCAAAGAGACGGCTTCATTGTGCCTGACCAAAAAGAAAGATTCCTTGCTGTGGGACATCGCTGACATGCATTGAGCCCACTCTGGAAAAGAGACTGGAAAAGAAACATACCTCAGAACAGTTACTACATCTCctgtcaaatgttttttttttattgttctaaCAAATGTGGACACAAATTTATATTGATAGAATAGTGAAAATAttgatttgatattttgaaaatgaaaccaatgTTTGTTGAGTgtcaaaaaattttatttgcactacatagatttttttttattaatggaaaAAACATAAGGGAGTTCTCTTCCTTTGtgtgtatacagtcaggtccatgagtccatatttggacattgacacaatttttgtaattttgcctctgtacaccatcacagtggatttgaaatgaagcaatcaagatggattgaagtgtagactttcagctttaattcaaggggtttaacaaaaatattgcattaaccatttaggaattaaagcCTATTCTACACACTATTCTCCAGATATTTAGAGCTATAatcagcatgaaaaaaaaaacatgcaacacTGATATGATATTACATAAAGGAATGTAATACATActaaataattacacatttttattaaaaattattgtaCTAGTATATATGATTCCTGTGTGATTCCAGTAAATGTATTTCTCTAGAAGGCTCTACTTGAGGAATAAACAAGggcaacaataataaacaagGGGACAGAAATGCCCATGATTTGTTAATAATGTTCTGACAAATTGTGgaacatgtttaaataaaatagatagaCTTCAAACTTTAGATGTTCCCAACAAAG

Function

NR:

description
PREDICTED: plexin domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937016.2 True 2693 mRNA 0.42 14 23215075 23230453

Neighbor

gene id symbol gene type direction distance location
si:ch211-106h4.4 NA coding upstream 884 23181870 ~ 23214191 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding upstream 70989 23124180 ~ 23144086 (+)
si:dkey-32m20.1 LOC108267269 coding upstream 105372 23105623 ~ 23109703 (+)
LOC113540574 stam,LOC108267818 coding upstream 111287 23054500 ~ 23103788 (+)
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 176921 22999911 ~ 23038154 (+)
ackr4a LOC108267630 coding downstream 43070 23273523 ~ 23276801 (+)
rnf182 rnf182 coding downstream 114605 23345058 ~ 23349627 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding downstream 123516 23353969 ~ 23376185 (+)
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding downstream 156556 23387009 ~ 23391001 (+)
stard3nl stard3nl,LOC107713985 coding downstream 162205 23392658 ~ 23401730 (+)
G69294 NA non-coding upstream 210973 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 276334 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 687519 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 817974 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 827330 22383094 ~ 22387745 (+)
G69443 NA non-coding downstream 54101 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 60957 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 100580 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 137208 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 217010 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 562628 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1452774 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1574918 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1891108 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2181322 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 88051 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 797653 24028106 ~ 24106223 (+)
G69971 NA other downstream 878342 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1628573 24859026 ~ 24871263 (+)
tnr tnr other downstream 2477374 25707827 ~ 25881110 (+)

Expression


Co-expression Network