LOC113540492 (hmx1)


Basic Information

Item Value
gene id LOC113540492
gene name hmx1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19426341 ~ 19429551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937017.2
ATGATGCTGCGCGCGCCCTGCAcagcctctgtgtctctcacacCAGTATCTATCAGCGACCTTTAGGAAACTAACAGTAAGCTGGATTTGGAAAATATGGGTGaagaagacatggtgtgccgaCCAGCAGCGCTGAAATTCACTATTGATCACATCCTTAATAAGGACTTGGATGTAAATCGCCAAAATTCACACCTCAGTTCAGAGAGCAGCTGTGCATCATGTGAAGATCAGAAATGTCATGAAACAGAGCACAGAGGTAACGACGGCTATGGCCACTCTCTGAGCATCACGATGGATGAAATAACTGGCAAGTTTCCCAGCAAGTCCAGTACAAACAGCAGAGATGATCTGTCTAAGCATCAACAAAACCACAAGAAGAGCAAACCACTGGCGAAGAAGAAAACCCGCACCATTTTCTCCAGGAGACAGATCTTGCAGCTGGAGTCGACTTTCGACCTGAAGCGCTATCTGAGCAGCGCTGAGCGAGCATGCCTCGCCAGCTCCTTACAGCTCACTGAGACACAGGTCAAAATCTGGTTCCAAAACAGAAGGAATAAACTGAAACGCCAGATCTCCACAGACTCGGACGGGTCGTACGGAGGAAGTGTTGGGAGGAATATTTTGGGAGGATGTTTGTTGCCGATGCCTGTTTCACTTCTGTATCCACATTACCTGTATCTCTCTCATGCCAGCAAATATCTCAGCCTTTTCAATGGAGATACGTGATTTCTCAAAGCACAGACTgttgaatttttattattatttttttttttatttttgcatggaGAATACGCAAACATTTGGAGGCACAATCCTGGACTGGAAGTTATTTAACTTGTGATAACAGTTGCACAAATAAGATTGAACAGTAATCGTATCATGCCTATTTTACTATGCAAGATATTAATAAGGGAAACATCAAACAATTCCCTAATATGCTTTATCATGCATGTGACAGTcatacaatgaaaaaaaatcacatcatttaaagacaaaatacaGCTTTGCTAAAGGACAATCAAGATCTTTGCCAAAGGATCTGCTATTTTAGAAGTTAGTTTTTATTATAAGAAGAACAtattgtggtttttttaatcaatataattaaactgtaaatCATTAGACTACTACAGGCTGCTGACTGCACAGTTTAAATATGAGCTAATGTAATAACAGAAATGGAATTTGGGAGAGTGTTGGATACCAATATTtggatttcattattttgttaaatatattattctTGAATAGCTACACTTCTGGCATTTCTAGACTGGgcaatatttctaaatataaaaaatatctcTTAGCTCTTATCTTGGTGCATTATTACTCTTATCTAATGAAGTGTGTGAATAATCTAAGCCTAAGCTAATGATATGGatattattaaaatctaaattgtCATTAAGCATTTTAGAGaatatttggatttatttggCTGTAATCATACAAAGAAACACATACAATTATCCATACAGAATCTATAATAACTAAATACATTTATAGCTTTAAAGCATTTgagcagggggaaaaaaatcgtTATTTGGAGAGCGTCCTCAAAGGCCATAGCTAGCTTCGTTCTCTGATTTTTCCAGGTCACTTACTTCTTTTGTGTTCTAGATTTTCTCTGCTTCCATTGTTCAGAGAAAATTAAGTGTCTGGTCCAGCCAAAATGTGCATACAGCCTCCAAGAAAATACTTAGTGTTGATCATTTACACCTCATGCTCATGTACCTGCTGGCAAATCTGCTGTGTTCAAATAAATATGCAACGATACAAAGGCCAAGTGCTAACAAAAACTGAGCCACTtcaatactgtattttataatgTAGCTCCCttattctcattattattattattattattattattataattattattattattatcatcccATAATAGCCGACTCTTATTGTTTTTgataaaaacattcagaaaagaGACTGTTTTCACTAAAGATTCATTacaattttaacaaataaaaggaCAATATCAGATCATTATAGTCTTTTGTCAGTGTTAACCTACACCATCCTATAGGTAACTATAGATATAGTTAACCTATATCTCtgttttggttaattttttAAGCATAAAACTATTACATCTATGTACACTGTCTCATTTATAGGCCACTCAATGGTTTCtgca

Function

symbol description
hmx1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within retinal cone cell development. Predicted to be active in nucleus. Is expressed in immature eye; neural plate; otic vesicle; pharyngeal arch; and sensory system. Human ortholog(s) of this gene implicated in oculoauricular syndrome. Orthologous to human HMX1 (H6 family homeobox 1).

NR:

description
PREDICTED: homeobox protein HMX1

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937017.2 True 2161 mRNA 0.36 2 19426341 19429551

Neighbor

gene id symbol gene type direction distance location
rpl34 rpl34,LOC107566275,LOC107573163,LOC107681344 coding downstream 74380 19347640 ~ 19351961 (-)
ostc ostc,LOC107568856,LOC107558957 coding downstream 81822 19340633 ~ 19344519 (-)
LOC113540739 NA coding downstream 203498 19222739 ~ 19222843 (-)
LOC113540506 LOC108267151 coding downstream 376893 19044822 ~ 19049448 (-)
larp7 larp7 coding downstream 384072 19034492 ~ 19042269 (-)
LOC113539975 NA coding upstream 3842 19433393 ~ 19444394 (-)
LOC113540585 LOC108267915 coding upstream 15145 19444696 ~ 19451408 (-)
LOC113540670 ybx2,LOC108267906 coding upstream 42300 19471851 ~ 19479200 (-)
LOC113539952 gps2,LOC106608669 coding upstream 58400 19487951 ~ 19495906 (-)
LOC113539790 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 coding upstream 69636 19499187 ~ 19501243 (-)
G67454 NA non-coding downstream 85812 19328348 ~ 19340529 (-)
G67453 NA non-coding downstream 87183 19333074 ~ 19339158 (-)
G67016 NA non-coding downstream 478802 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 911623 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 1039351 18386561 ~ 18386990 (-)
G67527 NA non-coding upstream 175941 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 186897 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 339806 19769357 ~ 19824919 (-)
G67556 NA non-coding upstream 358410 19787961 ~ 19788548 (-)
G67562 NA non-coding upstream 400999 19830550 ~ 19830750 (-)
LOC113540242 adamtsl1 other downstream 271120 19050150 ~ 19155221 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1586426 17792226 ~ 17839915 (-)
G66281 NA other downstream 1791473 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1982153 17439477 ~ 17444188 (-)
G66053 NA other downstream 2023877 17400594 ~ 17402464 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 450417 19879968 ~ 19881640 (-)
G67587 NA other upstream 458628 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 489929 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 533031 19962582 ~ 19965851 (-)
znf16l LOC108268318 other upstream 1348987 20778538 ~ 20825520 (-)

Expression


Co-expression Network