batf2 (batf2)


Basic Information

Item Value
gene id batf2
gene name batf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16772399 ~ 16776829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937051.2
tccaaggagtttaactgacttgatgctatactctgattaaaaagtgttcctttaattttttttagcagtgtATTAGGTAAAACCACCACATCCGTACTGCCAAAGAGAAGATTACATATCTCTCCGTTAGGATTCTAGAAAggggtctctgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgggtgggtggtgaGTGAGCACATCGGAGCGGGAAGGCTGAAGTGTACGGGAACAGGGTCCTGGCGCAATGTGTCCTGCCTTCCGCTCTCCACCTCCGCGAACGCGCCCGTTTCAAATAATGTGAAAGTGAAAGAGGCTGCACTCAGCAGCTCGGTATAAAATACAGCAAGACAGAGAGCCTTGTCAGGCCGGTAGCCTTCCCCTGGGTGACATCAGTTTAAACCCACTCTCCTTCTTAGAAAGTAAAGCACATGCCTCGTATTTAAAGAGCTCAAGAGACTGGAGCTTCACTTATCTTCACTGGATTGAGGAACATGGAGGCAGCGTTTAAACAGCTTCGTTTGTAAACAGCAGCGAGAGACAAAAACACTTCTTTCGAGATGCCATTTGCTCTCATGGAAAAGGTAGAGGAAGAAACAAGCTCTTTCTCTGGAAGTGACTCTCAGAGTCCACAGAACTGGGGCAGAGATCAGTCAGAAGAGAGGGTCTGTCAGCGTCGACAGCGGAACAGAGATGCAGCTCGTAAAAGTCGCAAAAAGCAGACAGAGAGGGCAGATGTCCTCCATGAGGAACTGCAGACTCTGGAACGGTCCAACTCCGCTTTAAAGAAAGAGATTTCTGAACTGGAGAAAGAACTGCAGCACTACACTACAGCCTTAAAAGAACATGAACCCCAGTGTACACTATCATGTTGGTCTGGACCTCCCATACCAGACATGTCTACCTCAGACTTCCCCCAAACCTTTAACCCAAACCCTGGTGAGGAGTCTATTTTTCCAACGCACGATCCAACCACCCCGGACGTCTCTCTTGCTGACCTCCTGGACAGGACTGACTGGATGCCATGGGATTCAGACATAAGATTGCCACCATTTTGAAAAGAGATTGTGGATGTTAAAGCTGAAAACCAAAAAATGTAGCTGGGCTGAACTTACTTCCACCTACCACTTCTGTCTGGTTTTAACATGTTCTAGTAGGTGGTGGTCTTTAGAAGTCTGTGAGATTTAACATTGTACTaagctttattattaaaattcagatttatttttgtatatgaCAAATATAACCTACAATTCAGTGTAGAATGTAATgacataaatgaaaaatgaaaaccgATGTGATTATTTCAGTTGTCCACAAACCACTTGCTGCTCATCTGtatgataaataaaaaggaacattaatataaaatgtatatatgtaaccAGAATGTAAACAGATTCAATATTAAATCACTAAATGTAGCCTGGTTGTTGcatctgtatttataaataatatattggAAATATATACAGTTTGATTGA
>XM_026937052.2
tccaaggagtttaactgacttgatgctatactctgattaaaaagtgttcctttaattttttttagcagtgtATTAGGTAAAACCACCACATCCGTACTGCCAAAGAGAAGATTACATATCTCTCCGTTAGGATTCTAAAGTAAAGCACATGCCTCGTATTTAAAGAGCTCAAGAGACTGGAGCTTCACTTATCTTCACTGGATTGAGGAACATGGAGGCAGCGTTTAAACAGCTTCGTTTGTAAACAGCAGCGAGAGACAAAAACACTTCTTTCGAGATGCCATTTGCTCTCATGGAAAAGGTAGAGGAAGAAACAAGCTCTTTCTCTGGAAGTGACTCTCAGAGTCCACAGAACTGGGGCAGAGATCAGTCAGAAGAGAGGGTCTGTCAGCGTCGACAGCGGAACAGAGATGCAGCTCGTAAAAGTCGCAAAAAGCAGACAGAGAGGGCAGATGTCCTCCATGAGGAACTGCAGACTCTGGAACGGTCCAACTCCGCTTTAAAGAAAGAGATTTCTGAACTGGAGAAAGAACTGCAGCACTACACTACAGCCTTAAAAGAACATGAACCCCAGTGTACACTATCATGTTGGTCTGGACCTCCCATACCAGACATGTCTACCTCAGACTTCCCCCAAACCTTTAACCCAAACCCTGGTGAGGAGTCTATTTTTCCAACGCACGATCCAACCACCCCGGACGTCTCTCTTGCTGACCTCCTGGACAGGACTGACTGGATGCCATGGGATTCAGACATAAGATTGCCACCATTTTGAAAAGAGATTGTGGATGTTAAAGCTGAAAACCAAAAAATGTAGCTGGGCTGAACTTACTTCCACCTACCACTTCTGTCTGGTTTTAACATGTTCTAGTAGGTGGTGGTCTTTAGAAGTCTGTGAGATTTAACATTGTACTaagctttattattaaaattcagatttatttttgtatatgaCAAATATAACCTACAATTCAGTGTAGAATGTAATgacataaatgaaaaatgaaaaccgATGTGATTATTTCAGTTGTCCACAAACCACTTGCTGCTCATCTGtatgataaataaaaaggaacattaatataaaatgtatatatgtaaccAGAATGTAAACAGATTCAATATTAAATCACTAAATGTAGCCTGGTTGTTGcatctgtatttataaataatatattggAAATATATACAGTTTGATTGA

Function

symbol description
batf2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
basic leucine zipper transcriptional factor ATF-like 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937051.2 True 1488 mRNA 0.43 4 16772399 16776829
XM_026937052.2 False 1201 mRNA 0.40 4 16772399 16776829

Neighbor

gene id symbol gene type direction distance location
sb:cb1058 LOC108267120 coding upstream 16992 16752137 ~ 16755407 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding upstream 22275 16746698 ~ 16750124 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding upstream 27042 16736067 ~ 16745357 (+)
mark2b mark2 coding upstream 57302 16675435 ~ 16715097 (+)
krcp LOC108267668,LOC108434626 coding upstream 98172 16669457 ~ 16674227 (+)
ppp2r5b ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189 coding downstream 65 16776894 ~ 16804016 (+)
zgc:101765 LOC108267536,LOC108434636 coding downstream 34571 16811400 ~ 16818534 (+)
exoc6b exoc6b coding downstream 48379 16825208 ~ 16920946 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding downstream 162632 16939461 ~ 16960809 (+)
LOC113539921 NA coding downstream 408192 17185021 ~ 17189452 (+)
G65663 NA non-coding upstream 1556 16770605 ~ 16770843 (+)
LOC113539905 NA non-coding upstream 8938 16758227 ~ 16763461 (+)
LOC113540742 NA non-coding upstream 10524 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 10752 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 11061 16761266 ~ 16761338 (+)
G65938 NA non-coding downstream 580509 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 581657 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 625730 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 634165 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 654248 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 401442 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 453233 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 732415 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2113463 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2503059 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 558668 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 832663 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1223329 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1336604 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1420483 18197312 ~ 18208564 (+)

Expression


Co-expression Network