slc8a4b (slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969)


Basic Information

Item Value
gene id slc8a4b
gene name slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14092494 ~ 14151289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937054.2
cacacacacacacacacactctctctctctctctctctctctctctctctcacacacacacacagattcagtTCCCATTCTCCTCAGTTTCAGTGTCCGCAGCTCCtgcttctcttctcctctcagcCTGAAGCTCTCCTTCACCAAGGCACAGGTATTTGCATAAGTTCTTCTCGGCTGGAAAGGAGGGACAGGAGCGTTCATTCAGCTGATGAAGGAGACAGGGTGAGGGCGTAATTCGGTTTGAAAGGGCATCGTAAATTATCCTCAGACTCTACGATCGATCCTGCAGCGGAGGAGAAATCCTTTTGCCCTGCTGCTCACACTGTAGTGTTGAGGAAACTACGTGAAGAGACGGATCACCTCCAGAACACAGTCATTCCTAACTGACGGCATGGACCCCAGCAGCGCGCTTTTCCTCTAGAGCAGCAGCTGGCTGTTAGACAGCAGGACCAGGAGCGACAGACAGGTGCATCACACACCGAGGATCTCTCCTGTGGATTTCCGCTTTATCTCTGACCCGATTCAGTCGtgtgtcagCAGGATAAGAGGAAGCTAACCTAGTGAGTGAGAAACCCCAGCCATGACTGCCTAGCACCAGACTTCTGTCCCTGAGCCACCAGAGAGACCCTGACAAAGCCATTACCTGTTTATAGAGGAGCTTTGGTTCTGTCAGACCAACAGTGGcTCGAAACCACAGAGAAGATCTTAAAAACTGCTCTGGAGGACTGACGATCCTGAACCATGCATCTCACCCCCCAAaccctctctttccttttcccttTACTTTTtcttatctctttctctgtcccctCAAATGCTGGTTCCCATGACCTATCCTCCTCCAGTGCCAACTGTTCCCAAGGTGATGTCTGCTCTGAGGGTGTGATCTTACCAGTATGGAACCCCCAGAATCCCTCAGTGGGTGACAAGGTGGCTCGTGCCATTGTCTACTTTGTGGCCTTGGTGTATATGTTCCTAGGGATGTCGATCATTGCAGATCGCTTTATGTCTTCCATTGAGGTAATCACCTCCCAAGAAAAGGAGATCACCATCAAGAGGCCCAATGGTGAGACCTGCACAGCTACAGTGCGCATCTGGAATGAGACCGTATCCAATTTAACCCTTATGGCTCTTGGATCGTCAGCTCCTGAGATCCTGCTTTCAGTCATTGAGGTGTGTGGGCACCATTTTGAGGCCGGAGATCTTGGCCCAAGCACCATCGTGGGCAGCGCTGCCTTCAACATGTTTGTCATCATTGGGCTCTGTGTCTACGTGGTGCCTGATGGTGAGACCAGGAAGGTCAAGCACCTGAGAGTCTTCTTTGTGACGGCGGCATGGAGTGTCTTTGCCTATGTGTGGCTCTATGTCATCCTTTGTGTGTCATCCCCTGGTGAGGTGGAGGTCTGGGAGGCTGTGCTCACCTTCCTCTTTTTCCCCGTGTGCGTGGTGCAGGCGTGGGTCGCTGACCGCCGCCTCTTCTTCTACAAGTACAGTCGCAAGCACTACCGTGCCGACAAGAGCCATGGCATTGTGGTGGAGACAGAAGGAGGGGATGAAGGAGTGAAGGAGACAGCCTTCAACAAAATGGACATGTTGGAGCTGGACGGCATGGCAGCCCACCTGGATGGAATGCTGGGGGGAGAGGATGGACTTGGAGGACGTGATCATGAGGAAGAGGCCAGGAGAGACATGGCCAGGACACTGAAGGAGCTCAAGCAGAGACACCCAGATAAGGATATGGAGCAGCTTATAGAGATGGCCAACTATCAGGTGCTGATGCAGCAGCAGAAGAGCCGAGCATTTTACCGTATTCAGGCCACACGGATGATGACCGGAGCAGGGAACATTCTGAAGAAGCATGCAGCCGATCAGGCCCGGAAGGTAGTGAGCAGTGGAGAGACGCGGGAGCAGGAGGACGACCCCTACACCACATGCCTGGAGTTTGAGCCTCCACTCTATCAGTGCTTTGAAAACTGTGGCCTGCTGAAACTCACAGTGGCAAGGCATGGGGGAGATGCAGCATGCACTGTAAAGGTTGACTATCGTACAGAAGATGGCACTGCCAACGCCGGCTCTGACTATGAATTTGCTGAAGGGACTCTGGTCTTCAAGCCCGGAGAGACCCTTAAAGAACTGACTGTTGGCATAATCGACGACGACATCTTTGAGGAGGACGAGTACTTCTACGTGCACCTGAGCAACCCACGCATTGTAGACGGGACCGATGGCCACCTGGCGGATGGGGGCGCTCCGGCTCTGAAGGCGGCTCTGGGAGAGGCTCACACAGCCACGGTGACCATCTACGATGATGACCATGCTGGAATCTTCACGTTTGAGAGTGAGTCAACACGGGTCAGCGAGAGCGTTGGGATCATGCAGGTGAAGGTCCAGAGGACGTCTGGTGCCCGGGGTCTTGTCGCTGTCCCCTACCGCACCATCGATGGTACAGCCCGTGGCGGAGAAGACTATGAGGAAACTTCTGGAAAACTGGAGTTCAAAAATGACGAGACCATGAAGATTATTGAAGTGAAGATCATTGATGATGAGGaatatgagaaaaacaaaaccttcACTATTGAATTGGGCGAGCCTGTTCTCCTGGAGATTGGACAGAAACATggggACTCCAATGAGAACAAGCCCACAGTAGGAGCAGAGGAAGAAGAGGTAGCTAAGATGGGATGTCCCAGTCTAGGAGACCACACCAGGCTGGAAGTGGTGATTGAGGAGTCCTATGAGTTTAAGagcacAGTGGATAAGCTCATTAAAAAGACCAATCTGGCTCTGGTAGTTGGAAGCAGTAGCTGGAGGGAGCAGTTTGTCAGCGCAGTTACCGTGAGCGCAGgtgatgatgatgaggaagagaGTGGCGAAGAGCGCCTCCCTTCCTGCTTTGACTACATCATGCACTTCCTCACAGTCTTCTGGAAAGTTCTGTTCGCCTTCGTGCCACCCACTGAGTACTGGAACGGCTGGGCGTGTTTCATCGTATCAATCTCTTTGATTGGCATCTTAACAGCAGTGACGGGTGATCTGGCCTCCCACTTCGGCTGCACCATTGGTCTGAAGGACTCCGTTACTGCCGTGGTGTTTGTAGCACTGGGCACCTCAGTACCAGACACCTTTGCCAGTAAGGTAGCTGCTATTCAGGACCAGTATGCTGATGCTTCCATTGGGAACGTGACTGGCAGCAATGCGGTGAACGTGTTCCTGGGCATCGGTGTGGCATGGACCATCGCAGCTGTGTACTGGCGCAGCAAGGGCAAAGCCTTCTACGTGGACCCAGGCTCTCTGGCATTCTCTGTCACACTCTTCACTGCgctatgtgtggtgtgtgtgagcgtgctGCTGTATCGCCGACGCCCCTCTGTGGCCGGAGGAGAACTGGGTGGCCCACGGACTTGCAAACTGGTGACATCGTTGCTTTTCTTTGGTCTTTGGCTTATCTACATTTTACTGGCCTCACTGGAAGCATACTGCCACATTCCTGGATTCtgagacagaaataaagcatGTGAAGAGACTTTAAGTTCACTTCTCACACTAGATAAGCGGCTTCATTAACgttttagtatttaaatgaaCTGTGAGTGTCATGTTCCACAATTTTTCCCCATTAATCCTCTCGGTTCTCTAAAGAAATACCTTACTGTGGATTCTTTTGTCCCTTTGCCTTACTCTAAGAACTCTGAAATTGTCTGTTCTAGTAACCAATAAGCCTTTTTcttcccatttttcctgtttgagCCAATTCCATGCTCCTGTTTCAGATATAAGGtcatgtgtttatgtttttctACTCTTTTTGAATTGCGTCAAGTGTCAGTATTGTTATTGTATAATTGCAGTTATggtattttaaaaagacatttggaCCAAGACAGACTGTCAGCGACTAACTGGATAAAATGATGGCCTTGCTCATACATGTTCACGTGTTAAAGCATGCTTCAAAATGGAAGAAGCTCGTAAGAAAATAGCAGAGAACATGGACAGACAATAAGCAAATTCTTTGAAGGAAGATGGACACTGAAAAAAATCCTCAGTCTGGACTCACAAAAGcaacataaaagaaaatgagacagGTTTGAAAATGATTTGGATGGTGCTGAAGATCGCATACTATTTAAACCTGCATGAGCTGGATTTGTGGACCCCGCTGATACCCAGTCATACACTAAAGAGGATTTCCAGCGAAGAGTTCCCACTGACACGATAAGCTAATTTAGTCCAAGGAcgcattctttttttctgaatggtTAATCGTACCTGAAGCTCAAGCATGCCATGAAGAAGAAAGAGCTGAGCTATGCTGTGATGATCTATATGGACAGTAGGAGGTGGCATTTCAACATGGCCACCACCCTCAACACGCCAAGGGGAGAAGTGTTACTATGGAAATACTgaacagaaagaggaaatgaCCTTTGCCATGTGTGTTCAGTGCATGTACACACGCTCTGTCCCTGCTTGTCTGTCTACAGGAACTCACTGACTTTATGTGTTCCAAAatacaactattattattattattattattattattattattattattattattattattttatattgattaCTTCGTTGTTGATGTCCAAGTCCAATGGTACTGTACGTTATCAGTCGTCACTGTTTTTCTGTGGTCACAGTCAGTATTTGTTACAGCTGGCTTTACTCTGTGCTGTGAAGATAAAGTATCTGTGACTATTTGTATAGTGATTGAAtaggagagggagaaagaaacaGGGAAAGTTATGActacttcctcctcctcctcctcctcctcctcctcctcctccttcttctcctcctcctatCTCAGtcctctgtatttctgttctCAGAATAGTCATCCACCACAGAGAGGAAACggagacagagaagaaaaaaagaaatgagtgtGACAGATTTAGTACGTGTGCAGATCTTTAGCTATTCTAAGTAGCTACTGATGCCTGATCCATTGTTTTGAGTGATAGAATGCGTGCGTGGGGTATTTTTAGCTATtcctgttgctaggcaaccatCGCGGAGTCATTGTCtcatgtgtgtgcttgtgtgtgtgtgtgtgtgtgttaagcgcCTTATAAGGTAGCTACTTTTCTTTCTGGCTGTCTGGTTGCTCTTAATAAATTGGAGTGCCAACCCAAAGCATCCCGATGAGGAAATAAGTGTTATAATTGCATTCCATACCCAGATAGccagagtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagaggtttaatCCTGAGTTGCTTGTGATTTAATATTTAGAGAACCGAGTGATTAgtcatgttttacacacacaattataaagtgtacatgtttgtgtgtgtgtttgtgtgtaagtgtgtgtgtgttgttggctTCTCTCTTCCTGGCTTCTTCAATTTCACTTAGTTTCTGAGTGTCACAGAATTTGTATCTTGACAGGCATGAAgaagaggacacacacacacacatacacacacacacaggtatctGTAAGAGGCATTAACCTCTCACAGTGCAGACATCATTTTGACATACCTTTGACACCCAGACACGTGGTTCTCAGCActcctctctcactgtctctgccTTTGTGCAtggatacacacaaacacacacacacacacacacacagatttccaTTCATTCAGAAGTGATTATGCTGCCATAAGGTTTGCACAGTAAGTGGTACAGATTGAATAATAGACAGTAAAATAGGTTAGACCACTTGGACAATCCTCATTAACACGAGAGAAGTACATTTGTAACttcctttgtgtgtttgtttatgtacTTTGATTCTACCAATATTTGTTTTTAGCAGTAattaattagatttatttatgtatgagTGGGTGGGTCTGTGGGGTGTATTATGTATTTAGATTTAATGACGTGGAgcatgtccaaaaaaaaaaaaagcaaaaatagcaAATGGCAAATGCCCCCAGGGAGCTATTATGTcatgcaatgtgtgtgtgtgtgtgtgtattatccATGAATTGACCATTCCTGTGTATGCGTTCATGTTCATTTCATCACCCAGTCCTGTATCTTTTAACATTActtgctctctccctctgctTTTAAGCCTTTGagtatttaattcatttctctTTGCTTTTATTCACAACATGTTCCCTTCCAAGAGTCACCAAGTGCTTTCCATCTGCGTAGATCTCATTAAGATTTTATCCGTTTGTTTTCTGCCTTCTTGTTTGCCTGTTTAATTTGAGATACTGAGCTCTTACTCTGAGATGCAGGTTCGTGCGGGAgctggtgtgtatgtgtcaggATGTGTGTAGGTCATTTAGAGACCTTGTCTGCTTGCAGCATTTGCATGTTTCATCATCTTTAACCTTGCTCATCCTCAAGTGTGCTTTTAGAAAATGTCATctcaagatatttttaaacataagtgAGTTATGAAAGTTGTTTACAAAGACATCATACTTTCTTTTAAATCAGAATTAAACTTGAAACCCATCCTGA

Function

symbol description
slc8a4b Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium ion import across plasma membrane and sodium ion transmembrane transport. Predicted to act upstream of or within cell communication; metal ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon; postsynapse; and sarcolemma. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and ovary.

NR:

description
PREDICTED: sodium/calcium exchanger 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005432 calcium molecular_function

KEGG:

id description
K05849 SLC8A, NCX; solute carrier family 8 (sodium/calcium exchanger)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937054.2 True 6517 mRNA 0.46 10 14092494 14151289

Neighbor

gene id symbol gene type direction distance location
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding upstream 12458 14064494 ~ 14080036 (+)
nagk nagk,LOC107697250 coding upstream 52887 14035207 ~ 14039607 (+)
m1ap m1ap coding upstream 76369 13973996 ~ 14016125 (+)
LOC113539767 t185a,tmem185a coding upstream 193989 13891113 ~ 13898505 (+)
ankrd46b ankrd46,ankrd46b,LOC108428588 coding upstream 202910 13882312 ~ 13889584 (+)
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding downstream 78684 14229973 ~ 14253890 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding downstream 204759 14356048 ~ 14379551 (+)
LOC113540153 nwd2,LOC107661962 coding downstream 425108 14576397 ~ 14622524 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding downstream 534965 14686254 ~ 14761565 (+)
paqr9 paqr9 coding downstream 672813 14824102 ~ 14829911 (+)
G64308 NA non-coding upstream 35607 14056527 ~ 14056887 (+)
G64095 NA non-coding upstream 50080 14041968 ~ 14042414 (+)
G64105 NA non-coding upstream 74825 14017286 ~ 14017669 (+)
G64103 NA non-coding upstream 79076 14013219 ~ 14013418 (+)
G64102 NA non-coding upstream 80179 14012098 ~ 14012315 (+)
G64459 NA non-coding downstream 143713 14295002 ~ 14295261 (+)
G64462 NA non-coding downstream 144981 14296270 ~ 14296472 (+)
G64668 NA non-coding downstream 528917 14680206 ~ 14680813 (+)
G64673 NA non-coding downstream 611046 14762335 ~ 14762596 (+)
LOC117597182 NA non-coding downstream 826037 14977326 ~ 15011493 (+)
gc2 LOC108267421,LOC108412585 other upstream 373040 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 530228 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 617457 13468552 ~ 13475037 (+)
G63903 NA other upstream 673798 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 806660 13275462 ~ 13285834 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 104455 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 480741 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1871905 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2158924 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2216667 16367956 ~ 16370957 (+)

Expression


Co-expression Network