brms1 (brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285)


Basic Information

Item Value
gene id brms1
gene name brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14255744 ~ 14269340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937055.2
ACGACGGGAAGCGAGCAGCGCAAATCCTGAGGAAGTCGAAGTTGTCCTAGTTGGTAGAAATATTCAGGCGCAAATATTTCCGCTGCTGCGCGACTTGAGCACAAACTGAGGCTGAGTAAATTAAGGGCGAGTGCAGCGGCAATGCCAGCCCAGCCTGCTCCGCGTGAAGCAGAAGAGGAGATGGAGACGGAGCCTGACTCTGAGGTGCCTCACGCTAACGGAGAGacggaggaggagagggagcgGGAGGGAGGAGAGGCAGAGGAGACAGTGGAGGAGAGTGGAGAGGAGCGAGAGAGTGACCTCGAGGAGAGTGaagcagaggaagaggaggaggaagaagaggagagttcagAGAttgatgatgaagattgtgAAAGGAGGAGAATGGAGTGTCTGGATGAGATGTCTGATCTGGAGAAGCAGTTCCTGGAACTCAAAGAAAAGTTATTTCGCGAGAGGCTGGACCAGGTGAAAGTGAAGCTGGACGAGGTGCTGACAGGAAAAGCAGGAGAGTACAGAGAGCCACTGGCCACACTTCAGAAAAACATGCAGCTACGCACTCAGGTAGCAGGTGTTTACAGAGAGCTGTGCCTTCAGGTGATCAAACACAAGCATGAGTGTGAGATACAGGGGGCAAAACAACATCTGGAGAGTGAGAGGATCCTGCTGTTTGACACCATGAAGACAGAGCTTCTGGAAAAGATCCGCAGGCTGGAGGAGGACAAGCAGAGTGTGGACATCACCTCAGagTGGTGGAGTGATGAAGTGAGGATGAAGAAGTGTAAGAAGCGAAGTCACCTAAGCCACctggagaggaagaaaaagccAGCACTCGTGTCAGgaccCTACATAGTGTACATGCTGAGGGACATTGACATACTGGAAGACTGGACAGCCATCAAGAAGGCTAAAGCAGCACTAATCCCCTTGAAGAAGAAGTCagacaGTCGTCAGTTGTCAGTGCGCAGTGAAGGAGGCACTCTGTTTTATGAGGGAGAGAGATTCTCAAAGGGCAACACTGTTCTGTTGGAAGTCAATGATGAAAGCCCAGCACAggcaGTAATAACAGCAGTCAGTGCAGGGGAAGTGTGGTTCAAAAGGACAGATGGCAGCAAAACCAAAATCTACATTTCACAGCTACAGAAAGGCAAATACACAATAAGGAGAGCCtagagtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatgcaaccATGTGCTGCAGGAGTGTATATGGGTCAAAGGTCAGGTGTGTCTTTTTTGACatctttttcatgttcattttccaaaaaaatgacTAACATGCCAACATCATTCCAGTCGTACTTCTCTGAtgtaaaaaaagacattaaagggaaaaaagttcTAAACTGCAAAATAGTGATTCAGAATAACAGTCTACATTAgcaaaatgttaaagaaaaactaatagtcacaaaaaaagaaattaatttatgaAGAATATTCTTAAGACTACTAAAACTCCTGattctttcctttttgtctttgacccatgtacactatattaacACTGTTGTAACATCAGGACATCCTGTCAAGTACATCCTTCTGCACCAATATACTGCTTGGTAATTCCTAACAGacttacagacagacagctagtTGTCAGAGcttcatcaataaacacaatatgGCACTGGAAGGAGTGCTTCACTAACACAGAGGCTTTCCACTGAGCAGACGGCATAACGGCAGCTTCTGTTCACCAGCACACACAGCGTATGGCTCAGCAACGGAAACTGCTGAATCACTGTTCCCCCAACTGCAGGCACACTCCCACAGCTATACACCgctacacacagctacacaccaCTATGGAGAAACGCAAAACTGTAGACCAAATAGGGATCATATAGATGCTTATAGCCCAATATATGTATCTTTACCCTTACCATATCCTAGTCTAACAAACTGGATTACCTAAAGCCAAAAGTagagcattttgtgtaaacttaACCACAACATGCCCCTAACGTGGTTAAAACAATGCTCCTATAAAGAAGTACACTAAAGATTTTTCCAAAGGCCTCAACGACTGCATTCACACATTGCTTATCTACGCTAGTACAGCTGTGGTCACACTGGAAAATTGCACTTTGAGTCTCCTTGTAAAATTGGTGTGACCAAGGCGGGCTGAatggtgacaaaaaaaagttcctTATAGTGCAGTTAGCTTTTAGCCAACTTTGAAGACTGTGTCTCAACTTTGTTAATGCAATTCAACTTTACTAAAGGGGTAATAAAACAAGTCCTGTACCATCCAGGGtctattcccacctcatgcccagtgtttctgTGACAGGCTCCGGATTTAACATGagcctgaccagaataaagcatttattgcatatgaatgaagaaataaagtCCTATGTAAACACAAATCTTTGTGTTGGTTGGTAGCAAGCTGGCTAACTTGGCCAACCATTGACAGTAAAAAACCGAAAACATAGTTATACCATCAGTTCCAGCCTCCAGAAATCCTGTGTACTATGCATACTTTATAGTCAGGTCTAGAATTATGTCTAATCTCATGCCTTCCCACTGTTAAAATGAGCTCTTTGAAAATTTTAGACCTTCTGCAGTGCTATAAAAGTTCCACCCCCTTCAGAGATCAACTGCTTCACAAATGAAGCAGTGATTGATCCATGATTTGATTTCACATATAAACAGTTCACCAAAGTTAAATTTGACACAAAGTTTAAGGACTAAATTTATTTGCTTTGGAAACTAAAGTGTTGAACTCcactgaattgaaatgaatgtaATTCAAAAAGCTAGTGTGACTGGGTCTTATTACACACCCTGGTGCTATTCCCTGTTTCTATAATGACACCAGGATTGTAGATTAATAGCGCCAAGTTGGAAAATGTCGCTTTAATTACAATTGCACTTCAGAAGGAGAAGTAGATTTGTGATAGAGATTTTTGAGCTCATTTTGATAAGCCTTGAGTGCAAAGAGTATTTATATGTTTGTAAGCTGATTTGGAAACTGAGGGTGCTTATAAAActtatttaaaagtgtttaatataatcatgtatttataacaaaaatttttattaaaatctggtcttttattaaa
>XM_034304046.1
ACGACGGGAAGCGAGCAGCGCAAATCCTGAGGAAGTCGAAGTTGTCCTAGTTGGTAGAAATATTCAGGCGCAAATATTTCCGCTGCTGCGCGACTTGAGCACAAACTGAGGCTGAGTAAATTAAGGGCGAGTGCAGCGGCAATGCCAGCCCAGCCTGCTCCGCGTGAAGCAGAAGAGGAGATGGAGACGGAGCCTGACTCTGAGGTGCCTCACGCTAACGGAGAGacggaggaggagagggagcgGGAGGGAGGAGAGGCAGAGGAGACAGTGGAGGAGAGTGGAGAGGAGCGAGAGAGTGACCTCGAGGAGAGTGaagcagaggaagaggaggaggaagaagaggagagttcagAGAttgatgatgaagattgtgAAAGGAGGAGAATGGAGTGTCTGGATGAGATGTCTGATCTGGAGAAGCAGTTCCTGGAACTCAAAGAAAAGTTATTTCGCGAGAGGCTGGACCAGGTGAAAGTGAAGCTGGACGAGGTGCTGACAGGAAAAGCAGGAGAGTACAGAGAGCCACTGGCCACACTTCAGAAAAACATGCAGCTACGCACTCAGGTAGCAGGTGTTTACAGAGAGCTGTGCCTTCAGGTGATCAAACACAAGCATGAGTGTGAGATACAGGGGGCAAAACAACATCTGGAGAGTGAGAGGATCCTGCTGTTTGACACCATGAAGACAGAGCTTCTGGAAAAGATCCGCAGGCTGGAGGAGGACAAGCAGAGTGTGGACATCACCTCAGagTGGTGGAGTGATGAAGTGAGGATGAAGAAGTGTAAGAAGCGAAGTCACCTAAGCCACctggagaggaagaaaaagccAGCACTCGTGTCAGgaccCTACATAGTGTACATGCTGAGGGACATTGACATACTGGAAGACTGGACAGCCATCAAGAAGGCTAAAGCAGCACTAATCCCCTTGAAGAAGAAGTCagacaGTCGTCAGTTGTCAGTGCGCAGTGAAGGAGGCACTCTGTTTTATGAGGGAGAGAGATTCTCAAAGGGCAACACTGTTCTGTTGGAAGTCAATGATGAAAGCCCAGCACAggcaGTAATAACAGCAGTCAGTGCAGGGGAAGTGTGGTTCAAAAGGACAGATGGCAGCAAAACCAAAATCTACATTTCACAGCTACAGAAAGGCAAATACACAATAAGGAGAGCCtagagtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacaatgcaaccATGTGCTGCAGGAGTGTATATGGGTCAAAGGTCAGGTGTGTCTTTTTTGACatctttttcatgttcattttccaaaaaaatgacTAACATGCCAACATCATTCCAGTCGTACTTCTCTGAtgtaaaaaaagacattaaagggaaaaaagttcTAAACTGCAAAATAGTGATTCAGAATAACAGTCTACATTAgcaaaatgttaaagaaaaactaatagtcacaaaaaaagaaattaatttatgaAGAATATTCTTAAGACTACTAAAACTCCTGattctttcctttttgtctttgacccatgtacactatattaacACTGTTGTAACATCAGGACATCCTGTCAAGTACATCCTTCTGCACCAATATACTGCTTGGTAATTCCTAACAGacttacagacagacagctagtTGTCAGAGcttcatcaataaacacaatatgGCACTGGAAGGAGTGCTTCACTAACACAGAGGCTTTCCACTGAGCAGACGGCATAACGGCAGCTTCTGTTCACCAGCACACACAGCGTATGGCTCAGCAACGGAAACTGCTGAATCACTGTTCCCCCAACTGCAGGCACACTCCCACAGCTATACACCgctacacacagctacacaccaCTATGGAGAAACGCAAAACTGTAGACCAAATAGGGATCATATAGATGCTTATAGCCCAATATATGTATCTTTACCCTTACCATATCCTAGTCTAACAAACTGGATTACCTAAAGCCAAAAGTagagcattttgtgtaaacttaACCACAACATGCCCCTAACGTGGTTAAAACAATGCTCCTATAAAGAAGTACACTAAAGATTTTTCCAAAGGCCTCAACGACTGCATTCACACATTGCTTATCTACGCTAGTACAGCTGTGGTCACACTGGAAAATTGCACTTTGAGTCTCCTTGTAAAATTGGTGTGACCAAGGCGGGCTGAatggtgacaaaaaaaagttcctTATAGTGCAGTTAGCTTTTAGCCAACTTTGAAGACTGTGTCTCAACTTTGTTAATGCAATTCAACTTTACTAAAGGGGTAATAAAACAAGTCCTGTACCATCCAGGGtctattcccacctcatgcccagtgtttctgTGACAGGCTCCGGATTTAACATGagcctgaccagaataaagcatttattgcatatgaatgaagaaataaagtCCTATGTAAACACAAATCTTTGTGTTGGTTGGTAGCAAGCTGGCTAACTTGGCCAACCATTGACAGTAAAAAACCGAAAACATAGTTATACCATCAGTTCCAGCCTCCAGAAATCCTGTGTACTATGCATACTTTATAGTCAGGTCTAGAATTATGTCTAATCTCATGCCTTCCCACTGTTAAAATGAGCTCTTTGAAAATTTTAGACCTTCTGCAGTGCTATAAAAGTTCCACCCCCTTCAGAGATCAACTGCTTCACAAATGAAGCAGTGATTGATCCATGATTTGATTTCACATATAAACAGTTCACCAAAGTTAAATTTGACACAAAGTTTAAGGACTAAATTTATTTGCTTTGGAAACTAAAGTGTTGAACTCcactgaattgaaatgaatgtaATTCAAAAAGCTAGTGTGACTGGGTCTTATTACACACCCTGGTGCTATTCCCTGTTTCTATAATGACACCAGGATTGTAGATTAATAGCGCCAAGTTGGAAAATGTCGCTTTAATTACAATTGCACTTCAGAAGGAGAAGTAGATTTGTGATAGAGATTTTTGAGCTCATTTTGATAAGCCTTGAGTGCAAAGAGTATTTATATGTTTGTAAGCTGATTTGGAAACTGAGGGTGCTTATAAAActtatttaaaagtgtttaatataatcatgtatttataacaaaaatttttattaaaatctggtcttttattaaa
>XR_004578085.1
ACGACGGGAAGCGAGCAGCGCAAATCCTGAGGAAGTCGAAGTTGTCCTAGTTGGTAGAAATATTCAGGCGCAAATATTTCCGCTGCTGCGCGACTTGAGCACAAACTGAGGCTGAGTAAATTAAGGGCGAGTGCAGCGGCAATGCCAGCCCAGCCTGCTCCGCGTGAAGCAGAAGAGGAGATGGAGACGGAGCCTGACTCTGAGGTGCCTCACGCTAACGGAGAGacggaggaggagagggagcgGGAGGGAGGAGAGGCAGAGGAGACAGTGGAGGAGAGTGGAGAGGAGCGAGAGAGTGACCTCGAGGAGAGTGaagcagaggaagaggaggaggaagaagaggagagttcagAGAttgatgatgaagattgtgAAAGGAGGAGAATGGAGTGTCTGGATGAGATGTCTGATCTGGAGAAGCAGTTCCTGGAACTCAAAGAAAAGTTATTTCGCGAGAGGCTGGACCAGGTGAAAGTGAAGCTGGACGAGGTGCTGACAGGAAAAGCAGGAGAGTACAGAGAGCCACTGGCCACACTTCAGAAAAACATGCAGCTACGCACTCAGGTAGCAGGTGTTTACAGAGAGCTGTGCCTTCAGGTGATCAAACACAAGCATGAGTGTGAGATACAGGGGGCAAAACAACATCTGGAGAGTGAGAGGATCCTGCTGTTTGACACCATGAAGACAGAGCTTCTGGAAAAGATCCGCAGGCTGGAGGAGGACAAGCAGAGTGTGGACATCACCTCAGagTGGTGGAGTGATGAAGTGAGGATGAAGAAGTGTAAGAAGCGAAGTCACCTAAGCCACctggagaggaagaaaaagccAGCACTCGTGTCAGgaccCTACATAGTGTACATGCTGAGGGACATTGACATACTGGAAGACTGGACAGCCATCAAGAAGGCTAAAGCAGCACTAATCCCCTTGAAGAAGAAGTCagacaGTCGTCAGTTGTCAGTGCGCAGTGAAGGAGGCACTCTGTTTTATGAGGGAGAGAGATTCTCAAAGGGCAACACTGTTCTGTTGGAAGTCAATGATGAAAGCCCAGCACAggcaGTAATAACAGCAGTCAGTGCAGGGGAAGTGTGGTTCAAAAGGACAGATGGCAGCAAAACCAAAATCTACATTTCACAGCTACAGAAAGGCAAATACACAATAAGGAGAGCCtagagtaaacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcaaccATGTGCTGCAGGAGTGTATATGGGTCAAAGGTCAGGTGTGTCTTTTTTGACatctttttcatgttcattttccaaaaaaatgacTAACATGCCAACATCATTCCAGTCGTACTTCTCTGAtgtaaaaaaagacattaaagggaaaaaagttcTAAACTGCAAAATAGTGATTCAGAATAACAGTCTACATTAgcaaaatgttaaagaaaaactaatagtcacaaaaaaagaaattaatttatgaAGAATATTCTTAAGACTACTAAAACTCCTGattctttcctttttgtctttgacccatgtacactatattaacACTGTTGTAACATCAGGACATCCTGTCAAGTACATCCTTCTGCACCAATATACTGCTTGGTAATTCCTAACAGacttacagacagacagctagtTGTCAGAGcttcatcaataaacacaatatgGCACTGGAAGGAGTGCTTCACTAACACAGAGGCTTTCCACTGAGCAGACGGCATAACGGCAGCTTCTGTTCACCAGCACACACAGCGTATGGCTCAGCAACGGAAACTGCTGAATCACTGTTCCCCCAACTGCAGGCACACTCCCACAGCTATACACCgctacacacagctacacaccaCTATGGAGAAACGCAAAACTGTAGACCAAATAGGGATCATATAGATGCTTATAGCCCAATATATGTATCTTTACCCTTACCATATCCTAGTCTAACAAACTGGATTACCTAAAGCCAAAAGTagagcattttgtgtaaacttaACCACAACATGCCCCTAACGTGGTTAAAACAATGCTCCTATAAAGAAGTACACTAAAGATTTTTCCAAAGGCCTCAACGACTGCATTCACACATTGCTTATCTACGCTAGTACAGCTGTGGTCACACTGGAAAATTGCACTTTGAGTCTCCTTGTAAAATTGGTGTGACCAAGGCGGGCTGAatggtgacaaaaaaaagttcctTATAGTGCAGTTAGCTTTTAGCCAACTTTGAAGACTGTGTCTCAACTTTGTTAATGCAATTCAACTTTACTAAAGGGGTAATAAAACAAGTCCTGTACCATCCAGGGtctattcccacctcatgcccagtgtttctgTGACAGGCTCCGGATTTAACATGagcctgaccagaataaagcatttattgcatatgaatgaagaaataaagtCCTATGTAAACACAAATCTTTGTGTTGGTTGGTAGCAAGCTGGCTAACTTGGCCAACCATTGACAGTAAAAAACCGAAAACATAGTTATACCATCAGTTCCAGCCTCCAGAAATCCTGTGTACTATGCATACTTTATAGTCAGGTCTAGAATTATGTCTAATCTCATGCCTTCCCACTGTTAAAATGAGCTCTTTGAAAATTTTAGACCTTCTGCAGTGCTATAAAAGTTCCACCCCCTTCAGAGATCAACTGCTTCACAAATGAAGCAGTGATTGATCCATGATTTGATTTCACATATAAACAGTTCACCAAAGTTAAATTTGACACAAAGTTTAAGGACTAAATTTATTTGCTTTGGAAACTAAAGTGTTGAACTCcactgaattgaaatgaatgtaATTCAAAAAGCTAGTGTGACTGGGTCTTATTACACACCCTGGTGCTATTCCCTGTTTCTATAATGACACCAGGATTGTAGATTAATAGCGCCAAGTTGGAAAATGTCGCTTTAATTACAATTGCACTTCAGAAGGAGAAGTAGATTTGTGATAGAGATTTTTGAGCTCATTTTGATAAGCCTTGAGTGCAAAGAGTATTTATATGTTTGTAAGCTGATTTGGAAACTGAGGGTGCTTATAAAActtatttaaaagtgtttaatataatcatgtatttataacaaaaatttttattaaaatctggtcttttattaaa

Function

symbol description
brms1 Predicted to enable histone deacetylase binding activity. Predicted to be involved in histone deacetylation and negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Sin3-type complex. Orthologous to human BRMS1 (BRMS1 transcriptional repressor and anoikis regulator).

NR:

description
breast cancer metastasis-suppressor 1 homolog

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937055.2 True 3172 mRNA 0.43 11 14255744 14269340
XM_034304046.1 False 3134 mRNA 0.43 12 14255744 14269340
XR_004578085.1 False 3134 misc_RNA 0.43 12 14255744 14269340

Neighbor

gene id symbol gene type direction distance location
ppp1r14bb ppp1r14b,ppp1r14bb,LOC108268202,LOC107583286,LOC107721662,LOC107661967 coding upstream 1854 14229973 ~ 14253890 (+)
slc8a4b slc8a4b,LOC108267603,LOC108428577,LOC107721660,LOC107583282,LOC107661969 coding upstream 104455 14092494 ~ 14151289 (+)
hspa12b hspa12b,LOC107697252,LOC107721672,LOC107691462,LOC107744271,LOC107571934 coding upstream 175708 14064494 ~ 14080036 (+)
nagk nagk,LOC107697250 coding upstream 216137 14035207 ~ 14039607 (+)
m1ap m1ap coding upstream 239619 13973996 ~ 14016125 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding downstream 86708 14356048 ~ 14379551 (+)
LOC113540153 nwd2,LOC107661962 coding downstream 307057 14576397 ~ 14622524 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding downstream 416914 14686254 ~ 14761565 (+)
paqr9 paqr9 coding downstream 554762 14824102 ~ 14829911 (+)
zmp:0000000660 arap2 coding downstream 619960 14889300 ~ 14968601 (+)
G64308 NA non-coding upstream 198857 14056527 ~ 14056887 (+)
G64095 NA non-coding upstream 213330 14041968 ~ 14042414 (+)
G64105 NA non-coding upstream 238075 14017286 ~ 14017669 (+)
G64103 NA non-coding upstream 242326 14013219 ~ 14013418 (+)
G64102 NA non-coding upstream 243429 14012098 ~ 14012315 (+)
G64459 NA non-coding downstream 25662 14295002 ~ 14295261 (+)
G64462 NA non-coding downstream 26930 14296270 ~ 14296472 (+)
G64668 NA non-coding downstream 410866 14680206 ~ 14680813 (+)
G64673 NA non-coding downstream 492995 14762335 ~ 14762596 (+)
LOC117597182 NA non-coding downstream 707986 14977326 ~ 15011493 (+)
gc2 LOC108267421,LOC108412585 other upstream 536290 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 693478 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 780707 13468552 ~ 13475037 (+)
G63903 NA other upstream 837048 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 969910 13275462 ~ 13285834 (+)
zgc:194930 LOC108268002 other downstream 362690 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 1753854 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2040873 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 2098616 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 3066157 17335497 ~ 17401388 (+)

Expression


Co-expression Network