LOC113540506 (LOC108267151)


Basic Information

Item Value
gene id LOC113540506
gene name LOC108267151
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19044822 ~ 19049448 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937056.2
TGGTTTGCTGTTTGATAGAGAGATTACACATTACATCATATGAATATTTTCAGACAGATTTCTTCTAGAACATCACACCTGATGTCTTATGTCTTTAGTTTTGAATGGAGAAATAGTTTTGTTATGACATTAGCTGGAACACTTGAACCCTGCCTACAGAGCCTCAGGAATCACCGTGTTTCTCTTGTGGACAAACTCGAGTTCCACATTGATTCACTTACAGATGTATTAATTACAAAGGAGATCTTCTCTAGAGATGATCTAGAGGAGATACAGTATGAGAAGGGGCCACGTGGAAAGGTCCGCAAAGTACTGGATATATTGGAGGGGAAGGGGGAAGAAGCAGCTAGAATCTTTATTTCTGCAAGTAGCTGCCTTGGAGAGTCCAACATAAAGGCTGAGGATCAGTCTCTAAAACAGACATCAGAATACCAAAAGGTCATAGCAAAGCATAAAGCCGTCTTGAAACGCAGAAGTGAGTGTATGCTCTACTATAACACACGGCATGGAGAAAAAATCCCTTTTTCTGAACACTATGTCAATCTGCTGATTGTGAAAGGCCACCACAGTTTAGAAATTAAAAGACATGAGGTTTTAACCTTTGGACAGCAGCGCATTTCTCTTCAGCAAAAAGCTACAGAGCAAAGACTGATCAAGCCAGCACAGCTGTTTTCCAGTGAAACAGGCAAAAAGCCAGCCAAAAAGGTTTTGGTGACTGGAGTAGCGGGGATTGGGAAAACTGTCCTGGTCCAGAAAATTCTTTGCGATTTCAGTAATCACAAAGAACATCAGTCTTTTGATTTCATTATTCACATGACCTTCAGGGACCTGAATCTTGTCAACAGGCCAGTGAGCCTAAGAGAACTTATTCTCCGTAAGAATGGACATCTTGCTAAGCATCTAGACACCATCACTGAAAATGACACTAAACTCTTGATCATTCTGGATGGCTTTGATGAATTTAAGCACTACAGGGGTTGCGATGTGGACATCTTTTTGACAGATCTCGATGAGGAAGGCGAGGTGGTGGAAGTCTTGTCCAGCTTAATGTTAGGGGAACTCCTCCCAGGAGCCTCTGTGCTGATTACCAGCAGGCCCATGGCTGTTAGCCACATCCCAATTGGATCCATTGACTGCTTTGTTGTTATAACTGGATTCTCCACTGTTGAGATCCATGACTTCTTCCAGCGTTTCTTTCAGGATGAGGAGCTGGCTACTAAGATGTTTGACATAGTGGCAGCAAATGAACTACTGCTTACTCTCTGCTACATACCAGCCTTCTGTCATATTGTATGTAGCATTCTGAAAGAAAGTAATGGTCTGTACCCAGATACCCCTAGAACAATGACTGATATTTACGTGCAGTACTTGCTGGCATTGgtcaaatcacacacaaacaatcgAATTGAATCATTAAACAATGTCAGTGGGATGAAGCATCAAGAGCACCTACAGGAAATCCTATTAAAGCTTGGCAGATTGGCATATCAGAAACTAATGAATCAAGAAACTCTGTTTTATAGCAACAATGATGAAATAGCCAGCTGTGTTATCGCAAGCACTTTTCTGGACAAGACATCCATTCAGGAACCAAGCTGCACAGAAGACGTGTATTCCTTTACACATCTCACAATACAGGAGTTTTTTGCTGCACTTTATTGTGCCATGGCAGATGTACCCTTATCAGAGACATTAGGTTCAGGCAATGAATACAGTATCGCATGTCTGCCAGGAAACCTTGATCTGTTTATGAGATTCCTTTCTGGTCTGCTATCAGAGAGGAACCAAGAACTGCTCTCCAGAAATATTGGCTTTGGAAAGCAGAAAGATAAAATGCAATCGTTCCGACTGAAGCTCATATCGGACACTCAAGCCACTTGTGAGAATGGTGCTTACATTTTAACACAGTTGCACTGTATTTTAGAGCAACAGGATGTGCTACTAATGCAGGAGCTCAAGCTGCAACATCTGCGTATCAACCTCAGTGACGTCACTCTCTCCACCATGGACCACAATGCTGTGAAGCACTTTCTCAGTGAAATACATCTGACTATATCAGAAGTGGATCTGACTGGGACAAACATCAGTGCTGAATCACTAAGAGATTTACAGCCCTACTTGCTCAGATGTGAGAAGCTATGGCTAGGGGAGAATAATCTGGACCTGGAAGCAATCGAGGTAGTTGCTGACATCCTGCAAGAATCTGATATCTTAAAGGAACTTGGTTTAGGATGGACAGACATTGGTGACGACCATCTTTTCGTACTCACAAATGCTATCAAGGCTAAGCAAATACTGACAGAACTCTGGATGGAGGGGAACAGAATCACTTTTGCGGGCTTATCACCATTAAGTGTCTTTACACCTTCTCCTCTTGAGAGAGTTGTtgcCATTTGGAACAATGTAACTGATGATGAAGGAGAGCGCCTCAACAGCCTCTGTCCTAAGCCCTGCTTCACCGTGTCCTTCACAGAAAATAGTATGTGGAAAGATTGGGCCAGTTGGGTTCTTCAGAGATGTGAGGTGAGTAGCAGTGAGAAGCTAGTGACAATCCTGTTCAAAGTGTATGACATATCTGTCCGCAGTATAGAAAGCCAGTGGGCCAAGTCTTTCTATATAAGCCTGACAAAACTAATACGGACACGAATTGAGCAGTGCATGGAGGAGGATGTTCGACGGAAACTGGAGAAATTTGAGACAATTTTGACCTCATAGTGGATTTCTCACTGCTGGGATTTAGTGGAATTTAGAAGCTGTTTTATACAGCCCAAAGAGAGGATTTTTCCGCCctgattttatatatgtttttttattcatttttttattacagcttata
>XM_034303508.1
TGGTTTGCTGTTTGATAGAGAGATTACACATTACATCATATGAATATTTTCAGACAGATTTCTTCTAGAACATCACACCTGATGTCTTATGTCTTTAGTTTTGAATGGAGAAATAGTTTTGTTATGACATTAGCTGGAACACTTGAACCCTGCCTACAGAGCCTCAGGAATCACCGTGTTTCTCTTGTGGACAAACTCGAGTTCCACATTGATTCACTTACAGATGTATTAATTACAAAGGAGATCTTCTCTAGAGATGATCTAGAGGAGATACAGTATGAGAAGGGGCCACGTGGAAAGGTCCGCAAAGTACTGGATATATTGGAGGGGAAGGGGGAAGAAGCAGCTAGAATCTTTATTTCTGCAAGTAGCTGCCTTGGAGAGTCCAACATAAAGGCTGAGGATCAGTCTCTAAAACAGACATCAGAATACCAAAAGGTCATAGCAAAGCATAAAGCCGTCTTGAAACGCAGAAGTGAGTGTATGCTCTACTATAACACACGGCATGGAGAAAAAATCCCTTTTTCTGAACACTATGTCAATCTGCTGATTGTGAAAGGCCACCACAGTTTAGAAATTAAAAGACATGAGGTTTTAACCTTTGGACAGCAGCGCATTTCTCTTCAGCAAAAAGCTACAGAGCAAAGACTGATCAAGCCAGCACAGCTGTTTTCCAGTGAAACAGGCAAAAAGCCAGCCAAAAAGGTTTTGGTGACTGGAGTAGCGGGGATTGGGAAAACTGTCCTGGTCCAGAAAATTCTTTGCGATTTCAGTAATCACAAAGAACATCAGTCTTTTGATTTCATTATTCACATGACCTTCAGGGACCTGAATCTTGTCAACAGGCCAGTGAGCCTAAGAGAACTTATTCTCCGTAAGAATGGACATCTTGCTAAGCATCTAGACACCATCACTGAAAATGACACTAAACTCTTGATCATTCTGGATGGCTTTGATGAATTTAAGCACTACAGGGGTTGCGATGTGGACATCTTTTTGACAGATCTCGATGAGGAAGGCGAGGTGGTGGAAGTCTTGTCCAGCTTAATGTTAGGGGAACTCCTCCCAGGAGCCTCTGTGCTGATTACCAGCAGGCCCATGGCTGTTAGCCACATCCCAATTGGATCCATTGACTGCTTTGTTGTTATAACTGGATTCTCCACTGTTGAGATCCATGACTTCTTCCAGCGTTTCTTTCAGGATGAGGAGCTGGCTACTAAGATGTTTGACATAGTGGCAGCAAATGAACTACTGCTTACTCTCTGCTACATACCAGCCTTCTGTCATATTGTATGTAGCATTCTGAAAGAAAGTAATGGTCTGTACCCAGATACCCCTAGAACAATGACTGATATTTACGTGCAGTACTTGCTGGCATTGgtcaaatcacacacaaacaatcgAATTGAATCATTAAACAATGTCAGTGGGATGAAGCATCAAGAGCACCTACAGGAAATCCTATTAAAGCTTGGCAGATTGGCATATCAGAAACTAATGAATCAAGAAACTCTGTTTTATAGCAACAATGATGAAATAGCCAGCTGTGTTATCGCAAGCACTTTTCTGGACAAGACATCCATTCAGGAACCAAGCTGCACAGAAGACGTGTATTCCTTTACACATCTCACAATACAGGAGTTTTTTGCTGCACTTTATTGTGCCATGGCAGATGTACCCTTATCAGAGACATTAGGTTCAGGCAATGAATACAGTATCGCATGTCTGCCAGGAAACCTTGATCTGTTTATGAGATTCCTTTCTGGTCTGCTATCAGAGAGGAACCAAGAACTGCTCTCCAGAAATATTGGCTTTGGAAAGCAGAAAGATAAAATGCAATCGTTCCGACTGAAGCTCATATCGGACACTCAAGCCACTTGTGAGAATGGTGCTTACATTTTAACACAGTTGCACTGTATTTTAGAGCAACAGGATGTGCTACTAATGCAGGAGCTCAAGCTGCAACATCTGCGTATCAACCTCAGTGACGTCACTCTCTCCACCATGGACCACAATGCTGTGAAGCACTTTCTCAGTGAAATACATCTGACTATATCAGAAGTGGATCTGACTGGGACAAACATCAGTGCTGAATCACTAAGAGATTTACAGCCCTACTTGCTCAGATGTGAGAAGCTATGGCTAGGGGAGAATAATCTGGACCTGGAAGCAATCGAGGTAGTTGCTGACATCCTGCAAGAATCTGATATCTTAAAGGAACTTGGTTTAGGATGGACAGACATTGGTGACGACCATCTTTTCGTACTCACAAATGCTATCAAGGCTAAGCAAATACTGACAGAACTCTGGATGGAGGGGAACAGAATCACTTTTGCGGGCTTATCACCATTAAGTGTCTTTACACCTTCTCCTCTTGAGAGAGTTGTCCATACAGTACTGGAAATAATTATGGACTAGACTGTGTATGTCTTATCTGTGGG

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937056.2 True 2836 mRNA 0.42 6 19044822 19049448
XM_034303508.1 False 2441 mRNA 0.42 6 19045959 19049448

Neighbor

gene id symbol gene type direction distance location
larp7 larp7 coding downstream 2553 19034492 ~ 19042269 (-)
plin2 plin2,LOC100304704,LOC100526709 coding downstream 15924 19025133 ~ 19028898 (-)
haus6 haus6 coding downstream 20915 19015356 ~ 19023907 (-)
LOC113540750 NA coding downstream 27422 19017270 ~ 19017400 (-)
LOC113540749 NA coding downstream 27869 19016823 ~ 19016953 (-)
LOC113540739 NA coding upstream 173291 19222739 ~ 19222843 (-)
ostc ostc,LOC107568856,LOC107558957 coding upstream 291185 19340633 ~ 19344519 (-)
rpl34 rpl34,LOC107566275,LOC107573163,LOC107681344 coding upstream 298192 19347640 ~ 19351961 (-)
LOC113540492 hmx1 coding upstream 376893 19426341 ~ 19429551 (-)
LOC113539975 NA coding upstream 383945 19433393 ~ 19444394 (-)
G67016 NA non-coding downstream 97283 18947318 ~ 18947539 (-)
LOC113539972 NA non-coding downstream 530104 18499351 ~ 18514718 (-)
G66651 NA non-coding downstream 657832 18386561 ~ 18386990 (-)
G66387 NA non-coding downstream 1024013 18015144 ~ 18020809 (-)
G66355 NA non-coding downstream 1179939 17864010 ~ 17864883 (-)
G67454 NA non-coding upstream 278900 19328348 ~ 19340529 (-)
G67453 NA non-coding upstream 283626 19333074 ~ 19339158 (-)
G67527 NA non-coding upstream 556044 19605492 ~ 19656442 (-)
G67528 NA non-coding upstream 567000 19616448 ~ 19629949 (-)
G67535 NA non-coding upstream 719909 19769357 ~ 19824919 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 1204907 17792226 ~ 17839915 (-)
G66281 NA other downstream 1409954 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 1600634 17439477 ~ 17444188 (-)
G66053 NA other downstream 1642358 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 2439105 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 702 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 830520 19879968 ~ 19881640 (-)
G67587 NA other upstream 838731 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 870032 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 913134 19962582 ~ 19965851 (-)

Expression


Co-expression Network