LOC113540507 (LOC108267598)


Basic Information

Item Value
gene id LOC113540507
gene name LOC108267598
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12712841 ~ 12716732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937058.2
taatataatataatataaaataaaataaaataaactacaatGCCCTACAATGCTCCAGAGTGTACTGTTTATCAGTTTAGGGCTTCTTGCGGCGTCAGTCCCGCGAGCATCATACGAGAGTTTCAGCGACTTTACTACACAGAAGACGCCGGAAATACTGTTTTCAAATCAAGATTCTCCCAAAATATTCTCCGGACGTTCATTTTCAAAAGCTGAAAATGTCCCTGAGCCTAACAATGGAGGTCTGGTTGTGAAGTGTGAGGAGCAAAACTGGAGAATTGTGGTGAAAAGGCAGTACTTTGGACGCGGTGTTTCTCTTCCCACATCAGTTCGGCTGGGTGAAGATGGCGCCGCTGGAGACTGCACTCCTCTGAAAGACTTCACTACTTCTACCGAGATGGTCATTTCTGCTGGATTACAAGACTGTGGAAGTGAATCTCGGGTAAGTGGCAACTGGCTCATTTATTCCAATAAGCTGGTATTTTCGCCTGGTACGCCGCTAACCTGGGATGGTGTCCTTGTATTGAAACATCCACCTACAGTCGTTCCTATTGAATGCCGTTATAAAAGAAAGTTTCGAGTGAGTGCAGAACCACTGAGCCCCACCTGGCTGCCCATGACCTCAACCATTGAAGCAGTAGGGTTACTGCACTTCTCTCTCAGTGTAATTAAAGGTGATGTAGGCTCCCTTCGTCCGTCCACAATATTCCAGCAGGGAGAGCCATTGTTCCTGGAAGCAGCAGTGCATGGTCCTATGCACCGTCCACTACGAATCTATGTGGACCACTGTGTGGCTACTGTTGATTCTTACCCATTATCAAGGCCTAGCTATGAGTTCATATCCAACCATGGGTGCCTGATAGATAGCATGTGGCCATACTCATCCTCTAAGTTTTACAGCAGGCCAAAGCAGAATATTCTCAGGTTCAGTGTACAGGCACTCTACTTCCCTCAAGATCTGAGAAAACAGATTTTCATCAGTTGCCACTTGAGAGCTGCTCCTGATTACACTCTGCCTGACTCCCAAAACAAAGCTTGCTATTTTCATGGACCTTCATTCAGTTGGCATGCAGTAGAGGGGAGCAgcaatgtgtgtctgtgttgtgaaACTGCAGACTGCAAGTCTGGGAAGGTGGACATGTCCGGCACATATctagAATCCTTAACTTGTCTCTTAAAGAGGAGCAGACCAGATTTGTTGGCCCACTTCACATTCTGCCCTCAAACGTACACTGGACTGGAAAACTTACCATAGGGACATGAGTCTCACCTGAGCCCTTCATCTAAGATAAACACATCTGCCAAAAGAAATGAAGtGTTTTGAAGAATCTGTATCTCTTCCCAGTGCAGTGTCATAATTCAAAATATCCCCATATGGCTGCTATCAgcagagaaatgaagaaaaaataccTTGTTGTGTGTCACGTATGCAAGTCATGTTTACACAGTGTTCGTCATATGCActggagctgtgaagaaaaTTTGCTCTTTCTGTATGCTCAAACAGTTTGGATTAAAGAGATTTGACAAATGTGA
>XM_026937059.2
aatataatataatataaaataaaataaaataaactacaatGCCCTACAATGCTCCAGAGTGTACTGTTTATCAGTTTAGGGCTTCTTGCGGCGTCAGTCCCGCGAGCATCATACGAGAGTTTCAGCGACTTTACTACACAGAAGACGCCGGAAATACTGTTTTCAAATCAAGATTCTCCCAAAATATTCTCCGGACGTTCATTTTCAAAAGCTGAAAATGTCCCTGAGCCTAACAATGGAGGTCTGGTTGTGAAGTGTGAGGAGCAAAACTGGAGAATTGTGGTGAAAAGGCAGTACTTTGGACGCGGTGTTTCTCTTCCCACATCAGTTCGGCTGGGTGAAGATGGCGCCGCTGGAGACTGCACTCCTCTGAAAGACTTCACTACTTCTACCGAGATGGTCATTTCTGCTGGATTACAAGACTGTGGAAGTGAATCTCGGGTAAGTGGCAACTGGCTCATTTATTCCAATAAGCTGGTATTTTCGCCTGGTACGCCGCTAACCTGGGATGGTGTCCTTGTATTGAAACATCCACCTACAGTCGTTCCTATTGAATGCCGTTATAAAAGAAAGTTTCGAGTGAGTGCAGAACCACTGAGCCCCACCTGGCTGCCCATGACCTCAACCATTGAAGCAGTAGGGTTACTGCACTTCTCTCTCAGTGTAATTAAAGGTGATGTAGGCTCCCTTCGTCCGTCCACAATATTCCAGCAGGGAGAGCCATTGTTCCTGGAAGCAGCAGTGCATGGTCCTATGCACCGTCCACTACGAATCTATGTGGACCACTGTGTGGCTACTGTTGATTCTTACCCATTATCAAGGCCTAGCTATGAGTTCATATCCAACCATGGGTGCCTGATAGATAGCATGTGGCCATACTCATCCTCTAAGTTTTACAGCAGGCCAAAGCAGAATATTCTCAGGTTCAGTGTACAGGCACTCTACTTCCCTCAAGATCTGAGAAAACAGATTTTCATCAGTTGCCACTTGAGAGCTGCTCCTGATTACACTCTGCCTGACTCCCAAAACAAAGCTTGCTATTTTCATGGACCTTCATTCAGTTGGCATGCAGTAGAGGGGAGCAgcaatgtgtgtctgtgttgtgaaACTGCAGACTGCAAGTCTGGGAAGGTGGACATGTCCGGCACATATctagAGGAGCAGACCAGATTTGTTGGCCCACTTCACATTCTGCCCTCAAACGTACACTGGACTGGAAAACTTACCATAGGGACATGAGTCTCACCTGAGCCCTTCATCTAAGATAAACACATCTGCCAAAAGAAATGAAGtGTTTTGAAGAATCTGTATCTCTTCCCAGTGCAGTGTCATAATTCAAAATATCCCCATATGGCTGCTATCAgcagagaaatgaagaaaaaataccTTGTTGTGTGTCACGTATGCAAGTCATGTTTACACAGTGTTCGTCATATGCActggagctgtgaagaaaaTTTGCTCTTTCTGTATGCTCAAACAGTTTGGATTAAAGAGATTTGACAAATGTGA

Function

NR:

description
PREDICTED: zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937058.2 True 1536 mRNA 0.44 10 12712841 12716732
XM_026937059.2 False 1512 mRNA 0.45 10 12712842 12716732

Neighbor

gene id symbol gene type direction distance location
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding upstream 42300 12508874 ~ 12670541 (+)
tifa tifa,LOC100304890 coding upstream 505966 12198342 ~ 12206875 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding upstream 590238 12099805 ~ 12122603 (+)
si:dkey-171c9.3 LOC108268329 coding upstream 619788 12086179 ~ 12093053 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding upstream 888693 11818766 ~ 11824148 (+)
epoa epo coding downstream 1521 12718253 ~ 12733478 (+)
gigyf1a gigyf1 coding downstream 25525 12742257 ~ 12767904 (+)
wrap53 wrap53 coding downstream 60445 12777177 ~ 12788225 (+)
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding downstream 79209 12795941 ~ 12861217 (+)
serpinh2 LOC108267141,LOC108412061 coding downstream 234337 12951069 ~ 12976437 (+)
G63242 NA non-coding upstream 354593 12357832 ~ 12358248 (+)
G63241 NA non-coding upstream 355160 12355550 ~ 12357681 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 463053 12248663 ~ 12249788 (+)
G63061 NA non-coding upstream 708618 12003990 ~ 12004223 (+)
G62983 NA non-coding upstream 775082 11934829 ~ 11937759 (+)
LOC113540557 NA non-coding downstream 51853 12768585 ~ 12772822 (+)
G63547 NA non-coding downstream 85162 12801894 ~ 12834330 (+)
LOC117596991 NA non-coding downstream 206138 12922870 ~ 12926987 (+)
G63685 NA non-coding downstream 402736 13119468 ~ 13119677 (+)
G63696 NA non-coding downstream 418927 13135659 ~ 13135860 (+)
si:dkey-112a7.4 LOC108268066 other upstream 417708 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1007505 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1107611 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2049430 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2217371 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 489925 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 558730 13275462 ~ 13285834 (+)
G63903 NA other downstream 701645 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 751820 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 841891 13558623 ~ 13562266 (+)

Expression


Co-expression Network