LOC113540512


Basic Information

Item Value
gene id LOC113540512
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30721032 ~ 30724657 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937066.2
ACAGTACGTGGACGTCCATTTATTGTCGTGTATTTGCTTGTAAAATTACATTATCTATCTATGTTTTCGTCCTTCTGTAAAATTCCCTGGATTTCACCAAAGgGTAAAAAGAAGTTTCTACAGTATAGACGAGAGAGTCTGAGAAGACAGGATGAAGCTGAATTACTTTGCAGGGATTCTTTTGGCCATGCAGTGGATCGTTTGCGTGTCTACGAcaggACATGGACGCCCAGCATCATGTTGTATAGTCACCAGCACAGACAGGGTCAATGTTTCAGAAATTGAGAGCTATGTGCGTGAAAACTCACCGTGTCACCTCAAAGCTGTAAGGTTCCTATTGGTAAACGGCAAAACAATATGCTCTGATCCAAAGGACGCTTGGGCCAAACATGCCATAGAGAAGCTGCGTAAAAGAACAACCATAAAAGTACCCACTACCCCAAAATCATGGACTACAAGCACATCTTCACCAGGAACAAATACAGAAAGCACAATAACCATGACGACACCTAAAGGAACATCGACCACATGGAAACCAAGAACATACATCACTCATAGATCTTCGACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAATGGACAACAACGCAAATTCCAACAACAAAGATGACTACTATTACAGATAGGAAGCCATTGACAACTGATATCAAGACAACTTCAATGACCATGACGACAGAAATCCCAGTGACCACGACAACACCTAAAGGACCATCAACCACCTGGAAACCAAGAACATACATCACTCATAGATCTTCGACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAGTGGACAACAACGCAAATTCCAACAACAAAGATGACTACTATTACGGATAGGAAGCCATTGACAACTGATATCAAGACGACTTCAATGACCATGACGACAGAAATCCCAGTGAGGACAACAACACCTAAAGGACCATCAACCACATGGAAACCAAGAACATACATCACTCATAGATCTTCAACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAGTGGACAACAACGCAAATTCCGACAACAAAGATGACTATGACCACGACAACAACTAAAGGAACATCAACCAAGGAAAGACCAGTCCAGAAACCATCCACACCGAAAATTAAACCACGGATAACACGCTGCCCACCAATCGTGATCTCCGAGCAAGACAAGCTCAAGGGAGAGTCCAGCAGCACCTCAGGAAAGAAGAAAATTCCATGGACAGTCAGAcgtttgaaaaagaaaagtaagaaGGGACTAAGGAGAGCACAGATGAACTCCAGGAGTGACAAAGAATGTGTAGAACGTTGACCAGTTTGGTTCTGAGATCTTTTTGAGACTGTAAGGTTAAAGGTTAAGAATCTTATGCCCTTGGAGATGACCGCAGAACATTGTGAGAAAAGTCTTGCGGTTATTCTTCACCCAATTTCGTCTGTGCACTTTCTTTCCATGTTGACTCATTCGATGTCAGATCAGTGCCACTAGGACTTTTAAGACTTTTGACACACTGACATGGGCATGATGAGTATTGCGCAATGATGCTCATGCTAGGTTTCTGATCAATCCATGGGTGAACTGTACAGATTTgcagatttacatttaaatttatgtttacatttattggCAGAGATCATTATCCATAGCGACTTAAAGAAATGCTTTGTAGACTCCAAGGTCAGGGTTGAAGAATACAAGCTAAAACCATGTTCAAGAGgaggtagtagtagtaggggTGAAttttactttccttttttttccttttgttttgttctcatGTAAGTGCTTAGTGAATCCAGCCAGGGGAAATGGATTCCACCACTCAATGGGTGCCATTACAGAGATGCCAACAAATTGTAACCATAAATAATCATAGATCCATGAAGATCTTTAAGTGTAACTGAACTGTACATAATCACAAATATGCGTTATAATGTAGATCAATAGAATTTTATGCTacgcattattattattattattattattattttttactattta
>XM_026937067.2
ACAGTACGTGGACGTCCATTTATTGTCGTGTATTTGCTTGTAAAATTACATTATCTATCTATGTTTTCGTCCTTCTGTAAAATTCCCTGGATTTCACCAAAGgGTAAAAAGAAGTTTCTACAGTATAGACGAGAGAGTCTGAGAAGACAGGATGAAGCTGAATTACTTTGCAGGGATTCTTTTGGCCATGCAGTGGATCGTTTGCGTGTCTACGAgACATGGACGCCCAGCATCATGTTGTATAGTCACCAGCACAGACAGGGTCAATGTTTCAGAAATTGAGAGCTATGTGCGTGAAAACTCACCGTGTCACCTCAAAGCTGTAAGGTTCCTATTGGTAAACGGCAAAACAATATGCTCTGATCCAAAGGACGCTTGGGCCAAACATGCCATAGAGAAGCTGCGTAAAAGAACAACCATAAAAGTACCCACTACCCCAAAATCATGGACTACAAGCACATCTTCACCAGGAACAAATACAGAAAGCACAATAACCATGACGACACCTAAAGGAACATCGACCACATGGAAACCAAGAACATACATCACTCATAGATCTTCGACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAATGGACAACAACGCAAATTCCAACAACAAAGATGACTACTATTACAGATAGGAAGCCATTGACAACTGATATCAAGACAACTTCAATGACCATGACGACAGAAATCCCAGTGACCACGACAACACCTAAAGGACCATCAACCACCTGGAAACCAAGAACATACATCACTCATAGATCTTCGACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAGTGGACAACAACGCAAATTCCAACAACAAAGATGACTACTATTACGGATAGGAAGCCATTGACAACTGATATCAAGACGACTTCAATGACCATGACGACAGAAATCCCAGTGAGGACAACAACACCTAAAGGACCATCAACCACATGGAAACCAAGAACATACATCACTCATAGATCTTCAACTAAAGGACCGCTTAGGAATACCCACAAGCCACCTCAGTGGACAACAACGCAAATTCCGACAACAAAGATGACTATGACCACGACAACAACTAAAGGAACATCAACCAAGGAAAGACCAGTCCAGAAACCATCCACACCGAAAATTAAACCACGGATAACACGCTGCCCACCAATCGTGATCTCCGAGCAAGACAAGCTCAAGGGAGAGTCCAGCAGCACCTCAGGAAAGAAGAAAATTCCATGGACAGTCAGAcgtttgaaaaagaaaagtaagaaGGGACTAAGGAGAGCACAGATGAACTCCAGGAGTGACAAAGAATGTGTAGAACGTTGACCAGTTTGGTTCTGAGATCTTTTTGAGACTGTAAGGTTAAAGGTTAAGAATCTTATGCCCTTGGAGATGACCGCAGAACATTGTGAGAAAAGTCTTGCGGTTATTCTTCACCCAATTTCGTCTGTGCACTTTCTTTCCATGTTGACTCATTCGATGTCAGATCAGTGCCACTAGGACTTTTAAGACTTTTGACACACTGACATGGGCATGATGAGTATTGCGCAATGATGCTCATGCTAGGTTTCTGATCAATCCATGGGTGAACTGTACAGATTTgcagatttacatttaaatttatgtttacatttattggCAGAGATCATTATCCATAGCGACTTAAAGAAATGCTTTGTAGACTCCAAGGTCAGGGTTGAAGAATACAAGCTAAAACCATGTTCAAGAGgaggtagtagtagtaggggTGAAttttactttccttttttttccttttgttttgttctcatGTAAGTGCTTAGTGAATCCAGCCAGGGGAAATGGATTCCACCACTCAATGGGTGCCATTACAGAGATGCCAACAAATTGTAACCATAAATAATCATAGATCCATGAAGATCTTTAAGTGTAACTGAACTGTACATAATCACAAATATGCGTTATAATGTAGATCAATAGAATTTTATGCTacgcattattattattattattattattattttttactattta

Function

GO:      GO:0070011

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937066.2 True 2026 mRNA 0.41 4 30721032 30724657
XM_026937067.2 False 2023 mRNA 0.41 4 30721032 30724657

Neighbor

gene id symbol gene type direction distance location
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 19987 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 497712 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 636171 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 664312 30050560 ~ 30056720 (-)
LOC113540054 NA coding downstream 678021 30037408 ~ 30043011 (-)
carmil3 carmil3,LOC108268291 coding upstream 566164 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 629245 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 635990 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 654816 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 803713 31528370 ~ 31533258 (-)
G73834 NA non-coding downstream 242798 30477403 ~ 30478234 (-)
G73684 NA non-coding downstream 523456 30195679 ~ 30197576 (-)
G73670 NA non-coding downstream 529911 30186896 ~ 30191121 (-)
LOC113540631 NA non-coding downstream 582160 30128728 ~ 30138872 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding downstream 618162 30101440 ~ 30102870 (-)
G73977 NA non-coding upstream 45440 30770097 ~ 30771174 (-)
G73974 NA non-coding upstream 53102 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding upstream 111695 30836352 ~ 30838110 (-)
G74047 NA non-coding upstream 305732 31030389 ~ 31031380 (-)
G74060 NA non-coding upstream 331828 31056485 ~ 31116436 (-)
G73619 blvra other downstream 698507 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 990175 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1145305 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 1549111 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1836067 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 16870 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 48792 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 522403 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1145861 31870518 ~ 31871874 (-)
G74547 NA other upstream 1149652 31874309 ~ 31874827 (-)

Expression


Co-expression Network