sox19b (LOC108267652)


Basic Information

Item Value
gene id sox19b
gene name LOC108267652
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17905533 ~ 17907890 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937073.2
TTTTCCCTAAAACCACGAGCGGGTAGAGACTGTTTTTGTCATGCCCCCGGTTATTATTCACAGAGTCAATCGCTGTTCAACAGGTGGCTTTGTAGAGTTTGGAGTTGGAGTAGCGCAGCTGTGATTTAgttattctctctttctgtgtgcgTTAAACTATCTCACTGCCATAAGCATCAAAGCGTCGGAATGGTAAACTTTTTATGACCCGTGGAAGTTTTTAGACTTTAGAggtttttcctttcttttttttccgcTCAGGCAAACTCGCCTATAGTGTATGTAGCATGCGGCAATAAGCTGCACCTGCGCCCTGTTTGTTTGCCTTGAGATTATTTCGGCTGATACTTAACTTACGACTCAAACAAGCTTCCGTGGAAGATCATAATGATGTACAGCATGATGGAGCACGAACTTAAGCCCCAGCCGGGTCAGCAGAATCCTCACCCGAACGGCCAAATCATGTCGCAACACGGCGGCTCCGGAAACGTGCCACAGGCGGCTCCGAAAAGCGCGTGCCCGCCCGGCGCAGACCCCATGGACAAGGTGAAGCGGCCCATGAACGCGTTTATGGTGTGGTCCCGAGCTCAGAGGCGCAAGATGGCCCAGGAGAACCCAAAGATGCACAACTCGGAGATCAGCAAGCGCCTGGGCGCCGAGTGGAAACTGCTGACCGACGCCGAGAAGCGGCCGTTCATCGACGAGGCCAAGCGGCTGCGCGCCGCGCACATGAAGGAGTACCCCGACTACAAGTACAAGCCTCGGCGCAAGAGCAAGCCGCCGGTGAAGAAGGACAACTCTGCGGCGAAGTATCCTCCGCTCCCCGGCGGCAGCCTGCTGGCCGCGGCGCATGCGCAGAGTGGGAGTCCGCGCGTGGACAGCTACGGCTGGGCTCCGGCTGGAAGCTACGCGGCCGTGCAGGGTGACGCGCTCGCGTACCAGCAGCAGCTGCACCGGTACGAGCTCCCGCTCCAGTACGCAGCCCCCATGTCGCAGACCTACATGAACGGCGCCAACTCTTACAGCCCAATGTCATACAGCAGCAGTCCCCAGCAGCCCAGCCCTGTAATGTCTATGGTCAAGCCAGAGGCCTTCACTCACTCGCCCACCGGAGCAACAAACCACCACCGTGGGGCAGTTCAAGGTGACCTTAGGGACATGATCAGCATGTACATCCCTGGAGGTGATGTAGGGGACCCTACAGCACAGAGGGGTTACCCAAGTGTCCAGCAGCACTATCTGGGCAGTACTGTGCCCCTCACACACATCTGAAGTAGAGAAGGAAAAGGACTGGGACTAGCTCAGCTGGATCACTACGTAGACTTGTAGTGCAACAAGTAATCTGTATGGATTCTTGGTGGATGTTGTGAGTACCTGTTGCACATAGGAACATTTTCTACCTCTTTGAGTGAtcttgctctgtttttttttttttttttttttttttttttttttttctttttttttttttccccttttttccctGTAGATTTGTTCATCCCCTTCCCCCAGccccttttttgtgtgttttttttttttttttctttttttctctgcccAGAATTTCACCCTTAATGCAGCTTGGAGGTTCTTTCCACAACAACTTCCTAATATAGACGGGCATGACATGTCTGTgtgattttgtcattttgtggcTGTTTACATCTTTTGAAAATTCAGTTTTCATTGTAGGACATTCCTTTTGTACATATGATCCAAATCTCGGAATCTGACTGTGTGCCTTTGTGCTGTGCTTCATTAACAGGGATTGGGGACATTCATGCAGTAAAAGGCAATCATGATCAAAAACCAAAATGGGGCATAGAATAGGGGACATAGGCACACGGAAATCATGTCCACTCACGATCACTATAGTCACTGATGTGCAAATCATGTGACCTATGGAGCAAGTGTAAGCCAGTTTTATAatctgtgcctttttttttttttt

Function

NR:

description
transcription factor Sox-19b-like

GO:

id name namespace
GO:0009950 dorsal/ventral axis specification biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937073.2 True 1951 mRNA 0.50 2 17905533 17907890

Neighbor

gene id symbol gene type direction distance location
mblac1 mblac1 coding downstream 22173 17880515 ~ 17883360 (-)
LOC113539930 LOC108268343 coding downstream 25149 17875167 ~ 17880384 (-)
her8a her8a,LOC108267186,LOC108262021,LOC107750660,LOC107563304,LOC107754663,LOC107666285 coding downstream 34619 17868627 ~ 17870914 (-)
gal3st4 gal3st4,LOC108443973,LOC107593694 coding downstream 52164 17843154 ~ 17853369 (-)
trnas-uga NA coding downstream 134302 17771150 ~ 17771231 (-)
eif4a1a if4a1,eif4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC107599941 coding upstream 4682 17912572 ~ 17918873 (-)
LOC113540701 NA coding upstream 7740 17915630 ~ 17915771 (-)
senp3b LOC108267653 coding upstream 11356 17919246 ~ 17928221 (-)
LOC113540164 plscr3,LOC108267765,LOC103046260,LOC102780386,LOC106577560 coding upstream 43126 17951016 ~ 17960932 (-)
LOC113540166 LOC108268288 coding upstream 61305 17969195 ~ 17972819 (-)
G66355 NA non-coding downstream 40650 17864010 ~ 17864883 (-)
G66349 NA non-coding downstream 93007 17799122 ~ 17812526 (-)
G66350 NA non-coding downstream 96519 17801666 ~ 17809014 (-)
G66318 NA non-coding downstream 204279 17696777 ~ 17701254 (-)
G66311 NA non-coding downstream 218435 17686886 ~ 17687098 (-)
G66387 NA non-coding upstream 107254 18015144 ~ 18020809 (-)
G66651 NA non-coding upstream 478671 18386561 ~ 18386990 (-)
LOC113539972 NA non-coding upstream 591461 18499351 ~ 18514718 (-)
G67016 NA non-coding upstream 1039428 18947318 ~ 18947539 (-)
G67454 NA non-coding upstream 1420458 19328348 ~ 19340529 (-)
map11 c7h7orf43,cunh7orf43,si:dkey-3k24.5,LOC107687048,LOC107594676,LOC107754664,LOC107561780,LOC105895567 other downstream 65618 17792226 ~ 17839915 (-)
G66281 NA other downstream 270665 17593748 ~ 17634868 (-)
rnaseka LOC108267746 other downstream 461345 17439477 ~ 17444188 (-)
G66053 NA other downstream 503069 17400594 ~ 17402464 (-)
bmp15 LOC108267203 other downstream 1299816 16603809 ~ 16605717 (-)
LOC113540242 adamtsl1 other upstream 1142260 19050150 ~ 19155221 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other upstream 1972078 19879968 ~ 19881640 (-)
G67587 NA other upstream 1980289 19888179 ~ 19888726 (-)
LOC113539792 LOC108267751,LOC108440128 other upstream 2011590 19919480 ~ 19943834 (-)
snrpf snrpf,LOC106609479,LOC107738052 other upstream 2054692 19962582 ~ 19965851 (-)

Expression


Co-expression Network