mpdu1b (mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765)


Basic Information

Item Value
gene id mpdu1b
gene name mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17894900 ~ 17899493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937074.2
GGCGTCTAAACCTGCACCAGAAGAAGAAACGACACTGGCGCATTCTAGCTCTGAAATCCTGCTCACTTCCTCTTCATGGCTTTGAATAAGTCATATAGTAAGTTGTCAATGATGCTGGACTTCGGTCGGTTTCCGGGTCACAGGCTGTAGGAGGACCGAATATCCGTCAGTTGAATTAtattgagaaagagagagagacagtttcCTGTTTGGAACAATGGCGGCGTCCGAGAAAGCTGTTTCTGCATCATTCATGGAGCCTTTCAAAGACATTCTGGTGAATTATTTAATGCCAGAGAAATGTTACGACGAGTTCTTCctgaattttaattttctaCATGTGGACTGTCTGAAGATAATAATTAGCAAAGGTTTAGGCATTGGAATCATCCTTGGCTCTGTACTTGTGAAATTGCCTCAGATCCTGAAAGTGATCGGTGCTAAGAGTGCAGAAGGACTGAGTTTTAAATCTGTGATGCTGGAGCTGCTTGCCATCACAGGCACTATGGCCTACAGTATTGCCAAAAGCTTTCCCTTCAGTGCCTGGGGTGAAGCGTTATTCCTCATGTTGCAGACAGTGACTATTGGATTTCTTATCCAGCATTATAAAGGAAGCACCGTTAAAGGATTGGGCTTTCTGGTCATCTATTTTTGCCTGGTGGCTGTCCTTATTTCTCCTCTCACCCCCATGTCTGTTGTCACCACCATGCAAGCCTCCAACATGCCAGCAATAATCTTTGGAAGGCTCATTCAGGCAGGTACCAACTACAGGAACGGCCACACAGGACAGCTGTCAGCTATTTCTGTGTTCCTGCTGTTTGGTGGTTCCCTGGCACGTATATTCACTACAGTGCAGGAGACAGGTGACTCCCTGATGGCTCTTTCTTATATCATCTCATCCTGCTGTAATGGACTGATCGCTGCTCAGGTTCTGTATTACTGGAATGTCAGTCCAGCAGTTAAGAAGAAGGCTGAGTAAACCTGCCACAAAACAGTGAGGACCTGAGGCTCGTAGTGCTCTACGTCCACTCCAGTTAACTTGCTGCTTTCAGCAACTTGTATGGAATCTACATGTAAATTTGGAATGAAATCCATTTAAGTGGTTTTGAATGTTGATCTCTTTTGAGATCGGTTGTTTAAAGCAGGAGGTTTCACAGTGTTGGTACATACACACTTTAAACAAGTAGTGAGTGGAAAGGTATGCCTACAGAGGTATGCCTATACAGAAGGGTATCTATTATTACACCTGTTAAAAAGCATTGTTGTGGCCTAAACTGTAGGACCAAAAAGGAACTTTCAGAAGGACCCCTTATCTCAGTGATTGATGATATTTCCATTGACTGTGGGTTGCAATGCCTATTCTGTCCAGTTTTCCTTATTTCCTTATAATTTCTTTAGCTCAGGGAAAGGAgaaattttattcatattttagaAACCTGTGCACCATGGAAATACGTTTTACTGTTTGTTGGGTTCATTGTTTATATTCCTTAATTGTTATAGATGTACCAATTTTTTCTAGTAGCTGCTAAGGTAAAACATCACAAATGAAATCAATGGCCAGCTAAATGTGACTCACAAATTTTTGTTTGCGTGAAATGTTGTTGAAGATCATGTTGATGTAATGGTTTTACTCATTTAGTATGAGTGTTACCTCAAAGTTTTGTTCCAAACACATCTGAATTGTGCATAGAGAAATATCTTTTTCCATACAGTTCTGATATTTTTAAGCTTATTGCAGAATGAAACAGAAATCTTCAGTTTGGTAATAACCAGTCATTATCAAGTAGGAACTgaaatgtggcaaaatgtgaaTGGATAGCTGAATAACGTCCTTTACACTTGTCCTTGTAACATGCCTATATTGCTGTATTGAAGGATGAACAAAGTGGTGAGTTGGACAAATTGATTGGTTGGCTGCAGAAAATTAGAATTCTTGAACTGAATTTTTGTTACATTGAAACTGTGTTAGTTTGTctgttaaaattttgttttgacACTATATGCTTCCTTGGTAGTAGTTTAAGCATTTCAGTTAATTTAGTTAAACTGCTGGATACAGTGAATTCTATAATCTGTCCACAGATCAtactgtctttttcttttccccaaGTCAGTGGGTCCACCAACATAACGTACACTATGAATTCTTCTtctgaattaaaatgtaataaacccAAAGCCAGTGTGTCATTTA

Function

symbol description
mpdu1b Predicted to be involved in oligosaccharide biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation If. Orthologous to human MPDU1 (mannose-P-dolichol utilization defect 1).
mpdu1 Involved in oligosaccharide biosynthetic process. Located in membrane. Implicated in congenital disorder of glycosylation If.

NR:

description
mannose-P-dolichol utilization defect 1 protein-like

GO: NA

KEGG:

id description
K09660 MPDU1; mannose-P-dolichol utilization defect 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937074.2 True 2197 mRNA 0.40 7 17894900 17899493

Neighbor

gene id symbol gene type direction distance location
LOC113539925 NA coding upstream 939 17889483 ~ 17893961 (+)
zanl LOC108267896,LOC108443962,LOC100147904,LOC107754654,LOC107561795 coding upstream 68374 17784990 ~ 17826526 (+)
trnat-agu NA coding upstream 130366 17764461 ~ 17764534 (+)
vgf LOC108267164 coding upstream 168491 17722149 ~ 17726409 (+)
LOC113539938 LOC108267768 coding upstream 192577 17700478 ~ 17702323 (+)
tnk1 tnk1 coding downstream 37353 17936846 ~ 17950388 (+)
LOC113540162 LOC108268287 coding downstream 66831 17966324 ~ 17968311 (+)
elp5 elp5 coding downstream 93147 17992640 ~ 17998216 (+)
gabarapb gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592 coding downstream 115636 18015129 ~ 18019079 (+)
spata6l spata6l coding downstream 120718 18020211 ~ 18028051 (+)
G66214 LOC108268343 non-coding upstream 17826 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 119591 17772553 ~ 17775309 (+)
G66159 NA non-coding upstream 147735 17740075 ~ 17747165 (+)
G66151 NA non-coding upstream 191445 17703234 ~ 17703455 (+)
G66144 snapc2 non-coding upstream 243190 17649365 ~ 17651710 (+)
G66169 NA non-coding downstream 5118 17904611 ~ 17919097 (+)
G66186 NA non-coding downstream 74505 17973998 ~ 17975359 (+)
G66237 NA non-coding downstream 90942 17990435 ~ 17992247 (+)
G66263 NA non-coding downstream 192095 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 212192 18111685 ~ 18111915 (+)
LOC113539940 NA other upstream 274821 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 493512 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1523943 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1575734 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 1854916 16023194 ~ 16039984 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 100665 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 213940 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 297819 18197312 ~ 18208564 (+)
G66864 NA other downstream 956963 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 2091191 19990684 ~ 20067220 (+)

Expression


Co-expression Network