gadd45bb (LOC108267448)


Basic Information

Item Value
gene id gadd45bb
gene name LOC108267448
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26816061 ~ 26818849 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937081.2
aGAAGAACACACTTTGGATTTATTAATTCTGTAAACTCGACtggattttatttgtttattattatgactCTCGGGGAGATTTGGAGCTGCAGCTGCTCTGACAAACAgacagaAGGTGTGGCTGATGCTCTGTTGGAGTTGCTCTCAGCGGCGAGGCGTCAGGAATGTGTCACACTCGGAGTTTACGAAGCTGCACAACTGCTGAATGTGGATCCAGACAGTGTGGTTCTGTGTGTTCTAGCAGCTGATGAGGAACACGAGCATGACGTCGCTCTGCAGATCCACTTCACGCTCCTGCAAGCGTTCTGTCGCGAGATCCACATCGACGTACTGCGTGTCAGCGGAATGAGACGTCTGGCCGAGACGCTGGGAGAACCACCCACCTCTGAAGGCCATGCCCATGAGCCCAAAGACTTACACTGCGTCCTGGTTACGAACCCGCAGGTTGAACACAGGAAATTGAGTGAAGTGGGTCGGTTTTGCCGAGAGAACCTCTGCAGGAACCAGTGGCTTCCTCACCTCAGCCTTCACGAGCGCTGAGGAGcaactgaacactgaacacgaGGAATTAACGCCACGCTGAGGACGTCAGATCTGGAGAGTATGTAAGGATGGAACAATCTGCACACGAGCACTGCGGACGACGGAAAAACATTTGTGTGATATTATTTTGCCCTCTAGGAGGCGCTGCGACTGCTACAGAAAAACAGTGCGTACTTTaccattttgtataaaaaaagcACGGGTTTGTTCGGGTGTTTACGGTGGTCATGCTACTCCTCTATTTACCGTAATGCCACGTGCTAACCGAAATTAGCATTATAGCTTATAAGTagcaaacagagaaaaaaatcaacgACTGCttataaattaaatgatgaGGTTTGTACACTAAAGTACGGCAACACTTCTGGGACAAAGACTAAACTCTAAACTACTGCAACAGATGTGCCGGAGAATTAAGTTTCAGCTACGTTAACATCTATATCAATGCTGCGTTACAGAATCAACTTTTTTCTCATCGCAGAGATTTTATTTTCGGTCATATTGACCAtcacactgtaaaatatttttcttatttataaacatgCTAACGTTTAtgctgaatgttaaataaatgtttaaaggtatgaaacaaa

Function

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 beta-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937081.2 True 1139 mRNA 0.45 4 26816061 26818849

Neighbor

gene id symbol gene type direction distance location
apoda.1 LOC108267187 coding upstream 45817 26766984 ~ 26770244 (+)
ifi44c2 NA coding upstream 51457 26751636 ~ 26764604 (+)
si:dkey-193b15.8 LOC108268053 coding upstream 77783 26735443 ~ 26738278 (+)
nrd1a nrd1a,LOC108268052 coding upstream 80465 26719230 ~ 26735596 (+)
pdcd10b pdc10,LOC108411198,LOC107557361,LOC103039132,LOC107706406,LOC105906142,LOC107684411 coding upstream 119737 26689037 ~ 26696324 (+)
sec62 sec62 coding downstream 4837 26823686 ~ 26831573 (+)
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding downstream 28042 26846891 ~ 26854149 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding downstream 38682 26857531 ~ 26865515 (+)
gpr160 gpr160 coding downstream 81998 26900847 ~ 26902366 (+)
LOC113539948 NA coding downstream 122478 26941327 ~ 26951857 (+)
G71550 NA non-coding upstream 29501 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 147933 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 265035 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 351747 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 521079 26294755 ~ 26294982 (+)
G71819 NA non-coding downstream 223854 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 254992 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 377152 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 398503 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 399378 27218227 ~ 27218455 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 440235 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 523277 26288290 ~ 26292784 (+)
G71385 NA other upstream 586870 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 592023 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 914055 25897017 ~ 25902006 (+)
gng7 NA other downstream 53827 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 565958 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1484002 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1497555 28316404 ~ 28338173 (+)
gng5 NA other downstream 1939696 28758545 ~ 28761451 (+)

Expression


Co-expression Network