elavl1a (elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423)


Basic Information

Item Value
gene id elavl1a
gene name elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26846891 ~ 26854149 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937094.2
TCATCTTCCGGGAGGCTGGACTTGCCGTTGATGGGCGTGGTCGTCACTTTCCGGTTACAGTTTCGTGTCACGCGCACGCAGCCACGTTCAGACAGAAAGCGCTCggaaggtgattttttttttggttttgagaAAAGACTCGGAGCGGGGGTGAAGTCGgAGGTGTACGACATGTCGAACGGTTACGAGGATCACATGGTGGAGGAGGCGAAGGATGCCAAGACGAACCTGATCGTGAATTATCTGCCACAGAACATGTCGCAGGAGGAGCTGCGCAGTCTCTTCAGCAGCATCGGCGAGGTGGAGAGCGCTAAGCTCATCCGAGATAAAGTCGCCGGCCACAGTTTAGGGTACGGCTTTGTTAACTATGTAAACCCTAGTGATGCAGAAAGAGCAATCAGTACTCTGAATGGCCTGAGGCTACAGTCTAAAACCATCAAGGTGTCGTACGCACGGCCGAGCTCAGACTCCATCAAAGATGCCAATCTGTACATCAGTGGCCTTCCTAAGAACATGACACAGAAGGATGTGGAGGACATGTTCACGCGCTATGGACGCATCATTAACTCGCGCGTGCTCGTCGATCAGACATCAGGTCTTTCCCGCGGCGTCGCGTTTATACGCTTTGACAAGCGCTCCGAGGCAGAAGACGCCATTAAAGAGCTGAATGGACAGAAACCTCCTGGCGCAGCCGAACCCATCACCGTCAAATTTGCTGCCAATCCCAAtcagattaaaaacacacagatcatCCCTCAGATCTATCACTCACAGTCTCGCCGCTTTGGAGGACCTGTACACCACCAGGCCCAGAGATTCAGgttCTCCCCAATGGGGGTGGACCACATGGGTGGTCTGTCCGGAGCGAACATGGGCGGGAGTGCGCAGGCCGGGTGGTGCATCTTCATCTATAATCTGGGTCCGGACGCAGATGAGGGAATTCTGTGGCAGATGTTCGGTCCGTTCGGCGCCGTCACCAACGTCAAAGTGATCCGAGACTTCAACACCAACAAGTGCAAAGGCTTCGGCTTCGTCACCATGACCAATTACGAGGAGGCGGCTGTGGCTATCGCTAGCCTCAACGGCTACAGACTGGGGGACAAGATCCTGCAGGTGTCCTTCAAAACCAGCAAGACTCACAAGTAGACGGACTTTGCTTGGAAAGCCGCTGTTTTATAGTTtcatctgcttctctctctctctctctctcacacacacacacacacacacacacacacacacacacactgtgctcatCACCATCCTCACACACCTAACGTCACTACGTCACTGCACTCATAACGACCGCAATTACTTTAATATCTTGATGTATCGTTTAACTGATTATTGCCACATGCCCTGTGTGTTAGTCCACTTCACACCACATCGGTCTCTCCATCTCATCTGCTCATTTTTGCACCTAAGGCTGTGACTGAAGTATAAAAAGTTACACAAAATGGTCAATAATTCagtcttgctttttttcccccaggaaTTCCTTTGTAGTATAATTTCACTTGGCTTAGCTTAGgtaggtttttctttttttttcttttctttttttttttccctccactgCAAGAGGGGTTGAGAAGACGCCCCATCACTgacatttctcctttttttttgtttttgttattctaACTGCAAGTTGCTAGCGAGATTTTCTGAAGGTACATGACTACCTGTCCATTTCTATCTTTGTTGTTCTTTATAAGTtaaggt
>XM_034304041.1
GGCGTGGTCGTCACTTTCCGGTTACAGTTTCGTGTCACGCGCACGCAGCCACGTTCAGACAGAAAGCGCTCggaaggtgattttttttttggttttgagaAAAGACTCGGAGCGGGGGTGAAGTCGATCAGAGTCGGGATCTGTGACGGCTCTTCATGGCAGTCAGAAGGGGACACGTTAGATACTTAAAAgAGGTGTACGACATGTCGAACGGTTACGAGGATCACATGGTGGAGGAGGCGAAGGATGCCAAGACGAACCTGATCGTGAATTATCTGCCACAGAACATGTCGCAGGAGGAGCTGCGCAGTCTCTTCAGCAGCATCGGCGAGGTGGAGAGCGCTAAGCTCATCCGAGATAAAGTCGCCGGCCACAGTTTAGGGTACGGCTTTGTTAACTATGTAAACCCTAGTGATGCAGAAAGAGCAATCAGTACTCTGAATGGCCTGAGGCTACAGTCTAAAACCATCAAGGTGTCGTACGCACGGCCGAGCTCAGACTCCATCAAAGATGCCAATCTGTACATCAGTGGCCTTCCTAAGAACATGACACAGAAGGATGTGGAGGACATGTTCACGCGCTATGGACGCATCATTAACTCGCGCGTGCTCGTCGATCAGACATCAGGTCTTTCCCGCGGCGTCGCGTTTATACGCTTTGACAAGCGCTCCGAGGCAGAAGACGCCATTAAAGAGCTGAATGGACAGAAACCTCCTGGCGCAGCCGAACCCATCACCGTCAAATTTGCTGCCAATCCCAAtcagattaaaaacacacagatcatCCCTCAGATCTATCACTCACAGTCTCGCCGCTTTGGAGGACCTGTACACCACCAGGCCCAGAGATTCAGgttCTCCCCAATGGGGGTGGACCACATGGGTGGTCTGTCCGGAGCGAACATGGGCGGGAGTGCGCAGGCCGGGTGGTGCATCTTCATCTATAATCTGGGTCCGGACGCAGATGAGGGAATTCTGTGGCAGATGTTCGGTCCGTTCGGCGCCGTCACCAACGTCAAAGTGATCCGAGACTTCAACACCAACAAGTGCAAAGGCTTCGGCTTCGTCACCATGACCAATTACGAGGAGGCGGCTGTGGCTATCGCTAGCCTCAACGGCTACAGACTGGGGGACAAGATCCTGCAGGTGTCCTTCAAAACCAGCAAGACTCACAAGTAGACGGACTTTGCTTGGAAAGCCGCTGTTTTATAGTTtcatctgcttctctctctctctctctctcacacacacacacacacacacacacacacacacacacactgtgctcatCACCATCCTCACACACCTAACGTCACTACGTCACTGCACTCATAACGACCGCAATTACTTTAATATCTTGATGTATCGTTTAACTGATTATTGCCACATGCCCTGTGTGTTAGTCCACTTCACACCACATCGGTCTCTCCATCTCATCTGCTCATTTTTGCACCTAAGGCTGTGACTGAAGTATAAAAAGTTACACAAAATGGTCAATAATTCagtcttgctttttttcccccaggaaTTCCTTTGTAGTATAATTTCACTTGGCTTAGCTTAGgtaggtttttctttttttttcttttctttttttttttccctccactgCAAGAGGGGTTGAGAAGACGCCCCATCACTgacatttctcctttttttttgtttttgttattctaACTGCAAGTTGCTAGCGAGATTTTCTGAAGGTACATGACTACCTGTCCATTTCTATCTTTGTTGTTCTTTATAAGTtaaggt
>XM_034304042.1
CAAGACGAACCTGATCGTGAATTATCTGCCACAGAACATGTCGCAGGAGGAGCTGCGCAGTCTCTTCAGCAGCATCGGCGAGGTGGAGAGCGCTAAGCTCATCCGAGATAAAGTCGCCGGTGTCGTACGCACGGCCGAGCTCAGACTCCATCAAAGATGCCAATCTGTACATCAGTGGCCTTCCTAAGAACATGACACAGAAGGATGTGGAGGACATGTTCACGCGCTATGGACGCATCATTAACTCGCGCGTGCTCGTCGATCAGACATCAGGTCTTTCCCGCGGCGTCGCGTTTATACGCTTTGACAAGCGCTCCGAGGCAGAAGACGCCATTAAAGAGCTGAATGGACAGAAACCTCCTGGCGCAGCCGAACCCATCACCGTCAAATTTGCTGCCAATCCCAAtcagattaaaaacacacagatcatCCCTCAGATCTATCACTCACAGTCTCGCCGCTTTGGAGGACCTGTACACCACCAGGCCCAGAGATTCAGgttCTCCCCAATGGGGGTGGACCACATGGGTGGTCTGTCCGGAGCGAACATGGGCGGGAGTGCGCAGGCCGGGTGGTGCATCTTCATCTATAATCTGGGTCCGGACGCAGATGAGGGAATTCTGTGGCAGATGTTCGGTCCGTTCGGCGCCGTCACCAACGTCAAAGTGATCCGAGACTTCAACACCAACAAGTGCAAAGGCTTCGGCTTCGTCACCATGACCAATTACGAGGAGGCGGCTGTGGCTATCGCTAGCCTCAACGGCTACAGACTGGGGGACAAGATCCTGCAGGTGTCCTTCAAAACCAGCAAGACTCACAAGTAGACGGACTTTGCTTGGAAAGCCGCTGTTTTATAGTTtcatctgcttctctctctctctctctctcacacacacacacacacacacacacacacacacacacactgtgctcatCACCATCCTCACACACCTAACGTCACTACGTCACTGCACTCATAACGACCGCAATTACTTTAATATCTTGATGTATCGTTTAACTGATTATTGCCACATGCCCTGTGTGTTAGTCCACTTCACACCACATCGGTCTCTCCATCTCATCTGCTCATTTTTGCACCTAAGGCTGTGACTGAAGTATAAAAAGTTACACAAAATGGTCAATAATTCagtcttgctttttttcccccaggaaTTCCTTTGTAGTATAATTTCACTTGGCTTAGCTTAGgtaggtttttctttttttttcttttctttttttttttccctccactgCAAGAGGGGTTGAGAAGACGCCCCATCACTgacatttctcctttttttttgtttttgttattctaACTGCAAGTTGCTAGCGAGATTTTCTGAAGGTACATGACTACCTGTCCATTTCTATCTTTGTTGTTCTTTATAAGTtaaggt

Function

symbol description
elavl1 Enables RNA binding activity; protein homodimerization activity; and protein kinase binding activity. Involved in 3'-UTR-mediated mRNA stabilization; negative regulation of gene silencing by miRNA; and protein homooligomerization. Acts upstream of or within mRNA stabilization and positive regulation of translation. Located in cytosol and nucleoplasm.

NR:

description
ELAV-like protein 1 isoform X2

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13088 ELAVL1, HUR; ELAV-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937094.2 False 1725 mRNA 0.49 6 26846891 26854149
XM_034304041.1 True 1757 mRNA 0.49 7 26846924 26854149
XM_034304042.1 False 1403 mRNA 0.49 4 26850360 26854149

Neighbor

gene id symbol gene type direction distance location
sec62 sec62 coding upstream 15318 26823686 ~ 26831573 (+)
gadd45bb LOC108267448 coding upstream 28042 26816061 ~ 26818849 (+)
apoda.1 LOC108267187 coding upstream 76647 26766984 ~ 26770244 (+)
ifi44c2 NA coding upstream 82287 26751636 ~ 26764604 (+)
si:dkey-193b15.8 LOC108268053 coding upstream 108613 26735443 ~ 26738278 (+)
zgc:101744 LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183 coding downstream 3382 26857531 ~ 26865515 (+)
gpr160 gpr160 coding downstream 46698 26900847 ~ 26902366 (+)
LOC113539948 NA coding downstream 87178 26941327 ~ 26951857 (+)
LOC113540685 LOC108267717 coding downstream 129592 26983741 ~ 27013645 (+)
LOC113540681 NA coding downstream 176591 27030740 ~ 27038359 (+)
G71550 NA non-coding upstream 60331 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 178763 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 295865 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 382577 26464011 ~ 26464314 (+)
G71408 NA non-coding upstream 551909 26294755 ~ 26294982 (+)
G71819 NA non-coding downstream 188554 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 219692 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 341852 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 363203 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 364078 27218227 ~ 27218455 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 471065 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 554107 26288290 ~ 26292784 (+)
G71385 NA other upstream 617700 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 622853 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 944885 25897017 ~ 25902006 (+)
gng7 NA other downstream 18527 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 530658 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1448702 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1462255 28316404 ~ 28338173 (+)
gng5 NA other downstream 1904396 28758545 ~ 28761451 (+)

Expression


Co-expression Network