gabarapb (gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592)


Basic Information

Item Value
gene id gabarapb
gene name gabarap,gabarapb,LOC105911381,LOC106577557,LOC105008592
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18015129 ~ 18019079 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937096.2
TTGTTATTGTATTCATCCGCGGCAATCTACTGTCTCAAAAACAGCGCTGCTAGTTGAACTGTCCAGCTTTGGCATTAAAGATCACCGTTTATAAGCGACATTTAATCACATTGCAGTCTCTGACACTGAGCTGCGATGAAGTTCCAGTATAAAGAGGAGCATCCGTTTGAGAAGAGGCGgtcagagggagagaaaatCAGGAAGAAATATCCGGACAGGGTTCCTGTAATTGTTGAAAAAGCTCCCAAAGCCAGAATAGGAGACCTGGATAAGAAGAAATATCTGGTCCCCTCGGATCTCACAGTTGGCCAGTTCTATTTTCTCATCCGAAAACGAATCCACCTAAGGGCTGAAGATGCTCTATTCTTCTTCGTAAACAATGTCATTCCTCCTACCTCCGCAACTATGGGCCTGTTATACCAGGAGCATCATGAAGAGGATTTTTTTCTCTACATTGCCTACAGTGATGAAAGTGTGTATGGAGAATAGAACCAAAGGGAAAAATAACTTCCCAcctccttttccttccttttacAAGAGTATATAAACCCATATCGGCAGCCTAGAGTTCAGAGCTTCTGACATCAAATgcacttttacttttttctttatttccattAATGTTTTTCCGTCATTCTGGAGTTTGCTGGAGTTTTGGTATTTGGTAGATGAAGGTCATTTTTCATTATACGttcattttttcaacatttgttttataaCTGGCCCCAAGCTgatgcagatttttttcaccACTTGACAGCTATCGGATGGAGCTTAAATGATAAAATCAGTTTGCATAGATTTTGAAATTGACCTTTGTTTCACTACAACTAGTGAATTGTTCTCCCAGAGCTTAGACTATATATTTTGGGTGCTGCTGATGGGCCATTTGTAAAAACCACACTAAAAGCGAACTGTCTTTCTCCAGTTATGTTTCAAAATATTCTTtcaatatgaatatttaatgagaGTTATTGTACCTGCATAATGCTAGGTAATTTGATTTGAGATTATATATCTTAGCTGATTTATTTAgcagttttattctttttttttttttttgtttgttgaacTCGGTATTCAGCTGCATTTCTGATACCCTTAACTTGAGGTGACAATATAAACTAAACCTAGATGAAC

Function

symbol description
gabarapb Acts upstream of or within head development. Predicted to be located in membrane. Is expressed in brainstem; cerebellum; eye; optic tectum; and telencephalon. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein).
gabarap Enables GABA receptor binding activity; beta-tubulin binding activity; and ubiquitin protein ligase binding activity. Involved in extrinsic apoptotic signaling pathway via death domain receptors; positive regulation of cellular protein metabolic process; and regulation of Rac protein signal transduction. Located in autophagosome membrane.

NR:

description
PREDICTED: gamma-aminobutyric acid receptor-associated protein-like

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937096.2 True 1140 mRNA 0.38 4 18015129 18019079

Neighbor

gene id symbol gene type direction distance location
elp5 elp5 coding upstream 16913 17992640 ~ 17998216 (+)
LOC113540162 LOC108268287 coding upstream 46818 17966324 ~ 17968311 (+)
tnk1 tnk1 coding upstream 64741 17936846 ~ 17950388 (+)
mpdu1b mpdu1,mpdu1b,LOC107750562,LOC107687039,LOC107704248,LOC107561765 coding upstream 115636 17894900 ~ 17899493 (+)
LOC113539925 NA coding upstream 121168 17889483 ~ 17893961 (+)
spata6l spata6l coding downstream 1132 18020211 ~ 18028051 (+)
rap1gds1 rap1gds1,LOC107552992 coding downstream 30210 18049289 ~ 18082430 (+)
sec24d sec24d,LOC103036498,LOC107732696 coding downstream 202545 18221624 ~ 18243797 (+)
gba3 LOC108267130,LOC108437095 coding downstream 407279 18426358 ~ 18430359 (+)
sod3a NA coding downstream 830086 18849165 ~ 18851580 (+)
G66237 NA non-coding upstream 22882 17990435 ~ 17992247 (+)
G66186 NA non-coding upstream 39770 17973998 ~ 17975359 (+)
G66169 NA non-coding upstream 96032 17904611 ~ 17919097 (+)
G66214 LOC108268343 non-coding upstream 138055 17873399 ~ 17877074 (+)
G66179 NA non-coding upstream 239820 17772553 ~ 17775309 (+)
G66263 NA non-coding downstream 72509 18091588 ~ 18096583 (+)
G66426 NA non-coding downstream 92606 18111685 ~ 18111915 (+)
G66452 NA non-coding downstream 158155 18177234 ~ 18177642 (+)
G66637 NA non-coding downstream 362877 18381956 ~ 18382162 (+)
G66654 NA non-coding downstream 411483 18430562 ~ 18431136 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 4167 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 395050 17609492 ~ 17620079 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other upstream 613741 17335497 ~ 17401388 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 1644172 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 1695963 16310213 ~ 16319166 (+)
frem1a frem1 other downstream 94354 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 178233 18197312 ~ 18208564 (+)
G66864 NA other downstream 837377 18856456 ~ 18858652 (+)
dock11 dock11,LOC107683516 other downstream 1971605 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 2128716 20147795 ~ 20154777 (+)

Expression


Co-expression Network