rps4x (rps4x,LOC103480264,LOC107373838)


Basic Information

Item Value
gene id rps4x
gene name rps4x,LOC103480264,LOC107373838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13564728 ~ 13569599 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937097.2
GCCGTAGTGCGGCATATCTTTCTTTCCCCGGAAGTAGGTGGCCCTTTTCCGCAGACTCCAACATGgcCCGAGGACCGAAGAAGCACCTGAAGCGCGTCGCAGCGCCCAAGCACTGGATGCTTGACAAACTTACTGGAGTGTTTGCTCCTCGGCCCTCCACCGGTCCCCACAAGCTGAGGGAGTGCCTGCCCCTCATCATCTTCCTGAGGAACCGGCTCAAGTACGCGCTGACCGGAGACGAAGTCAAGAAGATCTGCATGCAGAGGTTCATCAAGGTCGATGGCAAGGTCCGCACTGACATCACCTACCCTGCTGGATTTATGGATGTGATCAGCATTGAGAAGACCGGAGAGAACTTCCGCTTGATCTATGATGTGAAAGGCCGTTTCACCGTCCACCGCATCACCAACGAGGAGGCCAAGTACAAACTGTGCAAGGTGAAGAAAATCCTCATTGGTACTAAGGGAATCCCTCACCTGGTGACCCACGATGCCCGCACCATCCGCTACCCTGATCCCATGATCAAGGCCAACGACACGGTCCGCATTGACCTGGAGACTGGCAAAATCACAGACTTCATCAAGTTTGACACCGGTAACCTGTGCATGGTGACAGGCGGTGCTAACTTGGGTCGTATTGGTGTCATCACCAACCGAGAGAGGCACCCTGGCTCCTTTGATGTGGTGCACGTGAAGGACAGCACGGGCAACAGCTTCGCCACCAGGCTCTCCAACATCTTTGTCATTGGCAAGGGTAACAAGCCATGGGTGTCCATTCCTCGTGGAAAGGGTATCCGTCTGACCATTGCTGAGGAGAGAGATAAGAGACTGGCTGCCAAGCAGAGCAGCAGCTAAGTCCACTCATGACTGGCTTCCCCAAACCCTggtttcaataaaaaaaatatttacaacaatAA

Function

symbol description
rps4x Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Acts upstream of or within brain development and chordate embryonic development. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to several human genes including RPS4X (ribosomal protein S4 X-linked).

NR:

description
PREDICTED: 40S ribosomal protein S4, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02987 RP-S4e, RPS4; small subunit ribosomal protein S4e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937097.2 True 916 mRNA 0.54 7 13564728 13569599

Neighbor

gene id symbol gene type direction distance location
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding upstream 10780 13533817 ~ 13553948 (+)
si:dkey-33c9.6 LOC108267836 coding upstream 63895 13486536 ~ 13500833 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding upstream 113905 13443794 ~ 13450823 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding upstream 128132 13420533 ~ 13436596 (+)
dvl2 dvl2 coding upstream 147867 13399435 ~ 13416861 (+)
nhsl2 nhsl2 coding downstream 4035 13573634 ~ 13645984 (+)
arhgap36 LOC108267422,LOC108412584,LOC107702308,LOC107596505 coding downstream 77582 13647181 ~ 13684599 (+)
rasl11a rasl11a,LOC108412587,LOC107596470,LOC106577879,LOC107707904,LOC107684967 coding downstream 123178 13692777 ~ 13699690 (+)
LOC113540276 LOC108267420 coding downstream 154715 13724314 ~ 13738910 (+)
col4a6 col4a6,LOC108267418 coding downstream 228581 13798180 ~ 13880674 (+)
G63936 NA non-coding upstream 60009 13504460 ~ 13504719 (+)
G63898 NA non-coding upstream 97002 13459362 ~ 13467726 (+)
G63901 NA non-coding upstream 147287 13417221 ~ 13417441 (+)
G63889 NA non-coding upstream 176774 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 297694 13258874 ~ 13267034 (+)
G63976 NA non-coding downstream 403 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 126050 13695649 ~ 13748072 (+)
G64025 NA non-coding downstream 185945 13755544 ~ 13759751 (+)
G64049 NA non-coding downstream 333842 13903441 ~ 13909459 (+)
G64102 NA non-coding downstream 442499 14012098 ~ 14012315 (+)
cited1 cited1 other upstream 2462 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 89691 13468552 ~ 13475037 (+)
G63903 NA other upstream 146032 13418377 ~ 13418696 (+)
slc16a13 slc16a13 other upstream 278894 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 344869 13206657 ~ 13219859 (+)
gc2 LOC108267421,LOC108412585 other downstream 135818 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 686145 14255744 ~ 14269340 (+)
zgc:194930 LOC108268002 other downstream 1062431 14632030 ~ 14658936 (+)
LOC113540079 sh3tc1 other downstream 2453595 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 2740614 16310213 ~ 16319166 (+)

Expression


Co-expression Network