kirrel1a (kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226)


Basic Information

Item Value
gene id kirrel1a
gene name kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20102481 ~ 20129464 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937098.2
AAAAGAAAACGAAAAGACGAAAGAGGAGGGGGCAGCACTTCTGAcgccagtgagagagagagagagagagatgcgaGGAATGTGGCGCTAATGAGAAAACAGCGCTGCTGGAACGCAACGCGCGAGCAGTcaggaaaagcagaaggaaaagaagagttggatgaggaggaagaCTGAGGAAGACTGAGGAAGATCCCCACGCAGTAAACACGCATGGAAAGGATTGTTGTTGAGTGTTATTGGCAGAGCTGTGCGGGGATTTTCTGACGCTCCCCATGCGGAGATTTGAGCTTGCGGATTCGTGTCGGCTCGGCTGAACCATGCAGAGGCTGCTGCAGCTTCTCCTGAGTCTGGCGCTCACTTCTCACACGGTGTGGATGGCCCGGTTCTCTCAGGAGCCAGCAGATCAATCGGTGGTTCTGGGCCAAAGAGTGGTCCTGTCCTGCGTGGTCTTCAATTACTCAGGCATTGTGCAGTGGACTAAGGATGGGCTGGCTTTAGGCATTGGAGAAGACCTTCGAGCTTGGCCGAGATACCGTGTGTTGCGACTGGTGGATGTGGGGCAGTACAATTTGGAGATCTCATCGGCCGAACTCTCAGATGACTCTCTCTATGAGTGCCAGGCTACAGAGGCTGCCCTGCGCTCCCGCAGAGCCAAACTCACCGTTctcattCCCCCTGATGAGCCGGTTATTGACGGCTCCCCAGAGATCCTTCTCACTGCAGGGGTTTCCTACAACTTGAGCTGCGTGACGCGTGGAGCCAAACCCCCTGCAGTTATAGAATGGCAAAAAGACGGGCTGCCTGTAGAGGGGGCAGTCAGTACAACGgAGGTGCTACCTGATAGGAAGCGAGTAACCACGCGCAGCTTCCTGCCCGTTGTCCCAgtggacacagacacaggaaagaACTTCACATGCGTGGCCACCAACCTGGCTGCGCCCTTCGGCAAACGTACCGCCGTCACCCTCAATGTGCACCATCCTCCTGTGGTGGTGTTATCCATTGAACCACGCTCTGTGCtggaaggagagagagtgacatTCACCTGCCAAGCCACTGCCAACCCCCCAGTTATGGGCTACAAATGGGCTAAGGGCGGAGTGGTCATCCAGGGtgcgagagagagtgtgtttgtcaCTAAAGCTGACCACTCTTTTTTCACCGAGCCTGTTTCTTGCCTAGTGTTCAACGCGGTGGGGAGCACCAACGTCAGCATACTAGTGGATGTACACTTTGGTCCTATCTTGGTGGTAGAGCCAAAGCCAGTGACAGTAGACATTGATTCTGATGTCACGTTGAACTGCAAGTGGGCAGGCAACCCCCCTCTCACCCTCACATGGACAAAGAAGGGGTCCAGCATGGTGCTGAGTAACAATAACCAGCTCTATTTGAAGTCAGTGAGCCAGGCTGATGCTGGCCAATATGTGTGTAAGGCCATAGTGCCCAGGATTGGAGTGGGAGAAACAGAGGTCACTCTCACTGTCAATGGTCCCCCCATTATATCCAGTGAGCCAGTCCAGTACGCagtcagaggagagagaggcgAGGTCAAGTGTTACATCGCCAGCACTCCTCCACCGGACAAGATTGTGTGGGCGTGGAAGGAGAACGTGTGGGACAAAGAGAAGGGGACTCTACCAGAACGCTACACTGTGGAACAGAGTAAGCCGTCCTCTGATGGAGGAGCAGTGCTGTCTACTCTCACCATCAACAATGTCATGGAGTCTGACTTCCAATCCACCTACAACTGCACGGCCTGGAACGCATTCGGCCCAGGAACCATGATCATCACTCTGGAAGAGACCGAAATTGTCCCAGTTGGTATCATTGCAGGCAGCACTGTAGGCTGCTCTATTCTGCTGTTGCTCTGTCTGCTGGCATTAGTCCTGTTCCTATATCGTCAACGGAAAGGAAGTCGCCGTGGGGTCACTCTTGGTAAGCCAGACATCAAGGTGgagacaataaataaagaaacccACAGCTTAGAGGAAGACTCAGCCAGCGTCTCCACAGCAAGCCGCATGGTCAAGGCTATGTACTCGTTTTTGCCCTCTGTGACCCTTTCTCCCTCCTCTCAGCCTTTTAAAGATGACATTGATATCAAACCGGACCTGCGCAGTGACACCTTGGACACGCGTCAGGACTATGAGATCAAGGACCCAACAAATGGCTATTACAACGTGCGGGCTTCCACCCATGACGAGGGCCGTCCTGCCTCCCGCTCCATGCACTACTCTGACTATCGGACCGCCACTGCACCAGGCGGCGCTGCAACTGTTAGTGGTAGCTCAGGCACTGGAGCTACAGCAGGTCCTGGAACGCCGAGCAGCTTGGCTCCTGGGTCACGAGCTGGCTGCTATGACCCTAGACCTCCTTCCAGGCTCAGCTATGCCCAGTTCAACACCTTCAGCAGACCAAGTCAGTCTCAGCAGCCTCCGCCCAGCTCCGGGCCTCAGACAGGCGACTTTCCAGCTGAATGCAGTCTCCTAGACTCGACACCACAGTTACCATACGAGAACTACAGCTACCCATCGCACTACCCTACGTATCGTCTTGGCTTTGCTCCTCCCAGCCTCGCTCCATTAGAAAGCGGCGCAGCATATGAGATGTACAGCGTGGGGCAAAGTGTAAGCGTCGGAGGCACTGCTGCACCCCCGGAGAGTGGACTCGGGAAGTATGGTAGCTCCACGCGCTTTTCCTACACCTCGCAGCATTCCGACTATTCCCAccgacacacacagaggatgcaGACGCACGTGTGAAGGAGGAGCATAATGCCACACTGCGCTGCTCTTCCTcacttcagcacacacacttgacCACATGCTCACAAACATACACAGGAGGAAGTTGTAAAGAAAGGGAGAATGAGTGGTAGGAATCAGATCAGAAAGCACAGAAGAGAGAGTGGGAGGGAAATTGAGAGATGAGGGAATTCTCTTTTCAGCTTTTTCTGCTTATTTCCTCAGCTCGAGGAGCTGATAGCGAAAGTCACAATCAAGATGAAAAAAAGTAGCATTAATGAAGGATCTAAGATCTTCAAAATTCTGACTGTATAGGTGTGAATATCTTGGAGTTAGCATGGCCACAGACACATCTTGAGAACTGATGAAagcttctgtgtctgtctgtgacaAAAACTACATGGCAGCGGTGGTCATGGAAGACTTTTGTATGAATTCTTGTTAATGGCTTCTTCAACTCGTCTCCACACCTTTACAAGGCAAATACAAGAAAGCAATATAACAGAGATTACACCTACAGTAGACTTACAGTGGTTCAATGATGAGTCCTAAACAGTCTTACAGAATTTTATTAATTCCTCACAATCAACCATGAGCAAAGCACCAAACAAAGCACAACACTATATGACCATATATCCTTGGTTACCAAAgcattaggggtgtaacgatacggCACATCATATTCTATCATTCGATACGAGGCTCTCGATTCGATATGTCAGTACTTTCAACAGGCTGCCTAGTcttagttcagttcagttcagttttctGCTAAGCATTCTGTTTTTCATGAGCTAATACGCTAGCATACTAGCATATTAGCTCAAGGAAAGCAGCCATGGCTACCATCAACAGCAAGCAGGAACTGGAAAATTCCTACAAATCTGTAAGTCTTGTTGTTCAGGAGCACTTTGGATTCCCAGTGACTTAAAACTCTGATGACCAGTGACCTAAAGCTTCTGTGTCGGTTGGTAGAACTAGATGAAAACACGcagcaatgcacacacacacacacacatctctctgcTGATTTAGTACAGGTTACAGAAAATCACAGCAGAGTTTGGGAGCTGCAGATATGAGACCCTGCTTGGTAATGGAGAACGCAGGATTCAAAAACATGTTTGCgctacagagagctgtgtgacACTGAGTGCACAACTATCCAACAGCAgaatttgaaatttaaaaaaaaaaaaaaaactgtgcttCAGAGAAACTagagctaatgtttaattagacatttaattttattacatccTCAtg
>XM_026937099.2
AAAGAAAACGAAAAGACGAAAGAGGAGGGGGCAGCACTTCTGAcgccagtgagagagagagagagagagatgcgaGGAATGTGGCGCTAATGAGAAAACAGCGCTGCTGGAACGCAACGCGCGAGCAGTcaggaaaagcagaaggaaaagaagagttggatgaggaggaagaCTGAGGAAGACTGAGGAAGATCCCCACGCAGTAAACACGCATGGAAAGGATTGTTGTTGAGTGTTATTGGCAGAGCTGTGCGGGGATTTTCTGACGCTCCCCATGCGGAGATTTGAGCTTGCGGATTCGTGTCGGCTCGGCTGAACCATGCAGAGGCTGCTGCAGCTTCTCCTGAGTCTGGCGCTCACTTCTCACACGGTGTGGATGGCCCGGTTCTCTCAGGAGCCAGCAGATCAATCGGTGGTTCTGGGCCAAAGAGTGGTCCTGTCCTGCGTGGTCTTCAATTACTCAGGCATTGTGCAGTGGACTAAGGATGGGCTGGCTTTAGGCATTGGAGAAGACCTTCGAGCTTGGCCGAGATACCGTGTGTTGCGACTGGTGGATGTGGGGCAGTACAATTTGGAGATCTCATCGGCCGAACTCTCAGATGACTCTCTCTATGAGTGCCAGGCTACAGAGGCTGCCCTGCGCTCCCGCAGAGCCAAACTCACCGTTctcattCCCCCTGATGAGCCGGTTATTGACGGCTCCCCAGAGATCCTTCTCACTGCAGGGGTTTCCTACAACTTGAGCTGCGTGACGCGTGGAGCCAAACCCCCTGCAGTTATAGAATGGCAAAAAGACGGGCTGCCTGTAGAGGGGGCAGTCAGTACAACGgAGGTGCTACCTGATAGGAAGCGAGTAACCACGCGCAGCTTCCTGCCCGTTGTCCCAgtggacacagacacaggaaagaACTTCACATGCGTGGCCACCAACCTGGCTGCGCCCTTCGGCAAACGTACCGCCGTCACCCTCAATGTGCACCATCCTCCTGTGGTGGTGTTATCCATTGAACCACGCTCTGTGCtggaaggagagagagtgacatTCACCTGCCAAGCCACTGCCAACCCCCCAGTTATGGGCTACAAATGGGCTAAGGGCGGAGTGGTCATCCAGGGtgcgagagagagtgtgtttgtcaCTAAAGCTGACCACTCTTTTTTCACCGAGCCTGTTTCTTGCCTAGTGTTCAACGCGGTGGGGAGCACCAACGTCAGCATACTAGTGGATGTACACTTTGGTCCTATCTTGGTGGTAGAGCCAAAGCCAGTGACAGTAGACATTGATTCTGATGTCACGTTGAACTGCAAGTGGGCAGGCAACCCCCCTCTCACCCTCACATGGACAAAGAAGGGGTCCAGCATGGTGCTGAGTAACAATAACCAGCTCTATTTGAAGTCAGTGAGCCAGGCTGATGCTGGCCAATATGTGTGTAAGGCCATAGTGCCCAGGATTGGAGTGGGAGAAACAGAGGTCACTCTCACTGTCAATGGTCCCCCCATTATATCCAGTGAGCCAGTCCAGTACGCagtcagaggagagagaggcgAGGTCAAGTGTTACATCGCCAGCACTCCTCCACCGGACAAGATTGTGTGGGCGTGGAAGGAGAACGTGTGGGACAAAGAGAAGGGGACTCTACCAGAACGCTACACTGTGGAACAGAGTAAGCCGTCCTCTGATGGAGGAGCAGTGCTGTCTACTCTCACCATCAACAATGTCATGGAGTCTGACTTCCAATCCACCTACAACTGCACGGCCTGGAACGCATTCGGCCCAGGAACCATGATCATCACTCTGGAAGAGACCGAAATTGTCCCAGTTGGTATCATTGCAGGCAGCACTGTAGGCTGCTCTATTCTGCTGTTGCTCTGTCTGCTGGCATTAGTCCTGTTCCTATATCGTCAACGGAAAGGAAGTCGCCGTGGGGTCACTCTTGGTAAGCCAGACATCAAGGTGgagacaataaataaagaaacccACAGCTTAGAGGAAGACTCAGCCAGCGTCTCCACAGCAAGCCGCATGGTCAAGGCTATGTACTCGCCTTTTAAAGATGACATTGATATCAAACCGGACCTGCGCAGTGACACCTTGGACACGCGTCAGGACTATGAGATCAAGGACCCAACAAATGGCTATTACAACGTGCGGGCTTCCACCCATGACGAGGGCCGTCCTGCCTCCCGCTCCATGCACTACTCTGACTATCGGACCGCCACTGCACCAGGCGGCGCTGCAACTGTTAGTGGTAGCTCAGGCACTGGAGCTACAGCAGGTCCTGGAACGCCGAGCAGCTTGGCTCCTGGGTCACGAGCTGGCTGCTATGACCCTAGACCTCCTTCCAGGCTCAGCTATGCCCAGTTCAACACCTTCAGCAGACCAAGTCAGTCTCAGCAGCCTCCGCCCAGCTCCGGGCCTCAGACAGGCGACTTTCCAGCTGAATGCAGTCTCCTAGACTCGACACCACAGTTACCATACGAGAACTACAGCTACCCATCGCACTACCCTACGTATCGTCTTGGCTTTGCTCCTCCCAGCCTCGCTCCATTAGAAAGCGGCGCAGCATATGAGATGTACAGCGTGGGGCAAAGTGTAAGCGTCGGAGGCACTGCTGCACCCCCGGAGAGTGGACTCGGGAAGTATGGTAGCTCCACGCGCTTTTCCTACACCTCGCAGCATTCCGACTATTCCCAccgacacacacagaggatgcaGACGCACGTGTGAAGGAGGAGCATAATGCCACACTGCGCTGCTCTTCCTcacttcagcacacacacttgacCACATGCTCACAAACATACACAGGAGGAAGTTGTAAAGAAAGGGAGAATGAGTGGTAGGAATCAGATCAGAAAGCACAGAAGAGAGAGTGGGAGGGAAATTGAGAGATGAGGGAATTCTCTTTTCAGCTTTTTCTGCTTATTTCCTCAGCTCGAGGAGCTGATAGCGAAAGTCACAATCAAGATGAAAAAAAGTAGCATTAATGAAGGATCTAAGATCTTCAAAATTCTGACTGTATAGGTGTGAATATCTTGGAGTTAGCATGGCCACAGACACATCTTGAGAACTGATGAAagcttctgtgtctgtctgtgacaAAAACTACATGGCAGCGGTGGTCATGGAAGACTTTTGTATGAATTCTTGTTAATGGCTTCTTCAACTCGTCTCCACACCTTTACAAGGCAAATACAAGAAAGCAATATAACAGAGATTACACCTACAGTAGACTTACAGTGGTTCAATGATGAGTCCTAAACAGTCTTACAGAATTTTATTAATTCCTCACAATCAACCATGAGCAAAGCACCAAACAAAGCACAACACTATATGACCATATATCCTTGGTTACCAAAgcattaggggtgtaacgatacggCACATCATATTCTATCATTCGATACGAGGCTCTCGATTCGATATGTCAGTACTTTCAACAGGCTGCCTAGTcttagttcagttcagttcagttttctGCTAAGCATTCTGTTTTTCATGAGCTAATACGCTAGCATACTAGCATATTAGCTCAAGGAAAGCAGCCATGGCTACCATCAACAGCAAGCAGGAACTGGAAAATTCCTACAAATCTGTAAGTCTTGTTGTTCAGGAGCACTTTGGATTCCCAGTGACTTAAAACTCTGATGACCAGTGACCTAAAGCTTCTGTGTCGGTTGGTAGAACTAGATGAAAACACGcagcaatgcacacacacacacacacatctctctgcTGATTTAGTACAGGTTACAGAAAATCACAGCAGAGTTTGGGAGCTGCAGATATGAGACCCTGCTTGGTAATGGAGAACGCAGGATTCAAAAACATGTTTGCgctacagagagctgtgtgacACTGAGTGCACAACTATCCAACAGCAgaatttgaaatttaaaaaaaaaaaaaaaactgtgcttCAGAGAAACTagagctaatgtttaattagacatttaattttattacatccTCAtg

Function

symbol description
kirrel Predicted to enable cell adhesion molecule binding activity and myosin binding activity. Acts upstream of or within several processes, including excretion; negative regulation of protein phosphorylation; and positive regulation of actin filament polymerization. Located in cell-cell junction; dendritic shaft; and plasma membrane. Is expressed in craniocervical region bone; glomerular tuft; lung; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in nephrotic syndrome type 23. Orthologous to human KIRREL1 (kirre like nephrin family adhesion molecule 1).

NR:

description
PREDICTED: kin of IRRE-like protein 1 isoform X2

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937098.2 True 4013 mRNA 0.50 15 20102481 20129464
XM_026937099.2 False 3976 mRNA 0.50 15 20102482 20129464

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_2 NA coding upstream 1383 20101025 ~ 20101098 (+)
LOC113539830 NA coding upstream 3404 20091887 ~ 20099077 (+)
LOC113540456 LOC108268101 coding upstream 15176 20081770 ~ 20087305 (+)
LOC113540455 NA coding upstream 27446 20069061 ~ 20075035 (+)
ntn4 ntn4 coding upstream 119204 19971311 ~ 19983277 (+)
hacd4 hacd4 coding downstream 29848 20159312 ~ 20166249 (+)
mllt3 mllt3,LOC107683508 coding downstream 92424 20221888 ~ 20271231 (+)
c4h4orf54 LOC108268294 coding downstream 160333 20289797 ~ 20297146 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding downstream 177666 20307130 ~ 20314066 (+)
nectin4a LOC108267696 coding downstream 188973 20318437 ~ 20332200 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 136593 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 185312 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 188078 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 213756 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 220742 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 120594 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 351136 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 505884 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 562799 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 735414 20864878 ~ 20895955 (+)
dock11 dock11,LOC107683516 other upstream 35261 19990684 ~ 20067220 (+)
G66864 NA other upstream 1243829 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1893917 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1958850 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 2091519 18000158 ~ 18010962 (+)
fcer1g LOC100305060 other downstream 18331 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 890794 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1184754 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1499612 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1622952 21752416 ~ 21762301 (+)

Expression


Co-expression Network