odf3l2a (LOC108267126,LOC108428861,LOC103039917)


Basic Information

Item Value
gene id odf3l2a
gene name LOC108267126,LOC108428861,LOC103039917
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30050560 ~ 30056720 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937101.2
CTTGACTCATTGTACAGTGATGCATTCTGCAAAATTCACTGCATTCTGGCTAACATTTCTTCCACTTCTTTTTTGTTGCTCCTGGAGATGTGTGTTGCTTGGACAAGGATAAGGTTTCTCATCCTTGTAATGATCATCTATAATTCAGGTCGTAGTTggcccactgtgtgtgtgtgtgtgtgtgaatgaatccCCAACCTGTGCCGGACCTGGACACGAGGACGGTCTCTGTGAGCTGCGAGCTGCTCCATGGCAGAAGAAGTGACGAGACGGCGTCCTCTCATTGCTGGCCGGGAGAGGGggCCCGGACCAGGGCACTACGCTCTCCCCCCTACCATCGGCTACATAAACCACGACTACACCAAGCCCAGCAGTCCGGCATACTCCTTCCACCGCCGCATGAGCAGCAAAAtGCTGTTTGAGGACTGCAGTCCTGGGCCTCAGTACCACGTGGATGACAAGATCACTCGCTTCGGAAGAGATGGCACTCCGTCGTACTCGATGCTGGGTAGAAAGAAGGTCGGAGCGGATAAGTTCCAAACTCCCGGCCCAGGAGCCTACAGTCCGGAGAAGGCCCCTCCGCTAAACTGGCATCGCCGCCCGCCGTCCTACACCATGGCGTTCCGTACACGCTACAGGAGCGTAGACGCCGTACCTGCCCCCAACCGCTACACCCTGCCCAACCTGTTGGGTTCGCGTATTCCCAACAAGCCCTCCAGCGCCAGCTACTCCATGTCCCGCCGCATGAAACCCGGGGCGCCCTCCGAGGACCTGGCAATAACACCCGGGCCGGCTCACTACAACAGAACGGACGCGAGCATCTACATGAAGAGGCAGCCATCTTTCTCCATCCAGAGCCGCCACAACATCCCCAGCGATGCCACGTGCAAGCCTGGACCGGGCACTCACCGCCCGGAGAGAGTGACGGCGCACCTGCCCAGGCCGCCATCTTTCACCATGGGGGTGCGGCATTCGGAGTTTGTCACACCTCTAGTCATCGATTTAACTGACTGAAAAAAGCTACTTTCTGGAgtctataaacacacatggatGATGACATGATGAGGAAGCAAATTTTCACTGTTATTTGTATTTTCAcgtgtaaattatttatatattttattctttagttatagaatatagatagatatatgaCAATATTGACAGTTCTTACTGGTTTAGTcaacttcagaattattggcacctataactatataatatataatgcgTAAGAT
>XM_034303448.1
CCGAATCCACAGTGACGACGTGTGTGTCCACACAGCACCTggggaataaaaagaaaatacaaaaaagaaaatacaagaaggataattaaaaatgttaagcATAAGAGATGTGTGTTGCTTGGACAAGGATAAGGTTTCTCATCCTTGTAATGATCATCTATAATTCAGGTCGTAGTTggcccactgtgtgtgtgtgtgtgtgtgaatgaatccCCAACCTGTGCCGGACCTGGACACGAGGACGGTCTCTGTGAGCTGCGAGCTGCTCCATGGCAGAAGAAGTGACGAGACGGCGTCCTCTCATTGCTGGCCGGGAGAGGGggCCCGGACCAGGGCACTACGCTCTCCCCCCTACCATCGGCTACATAAACCACGACTACACCAAGCCCAGCAGTCCGGCATACTCCTTCCACCGCCGCATGAGCAGCAAAAtGCTGTTTGAGGACTGCAGTCCTGGGCCTCAGTACCACGTGGATGACAAGATCACTCGCTTCGGAAGAGATGGCACTCCGTCGTACTCGATGCTGGGTAGAAAGAAGGTCGGAGCGGATAAGTTCCAAACTCCCGGCCCAGGAGCCTACAGTCCGGAGAAGGCCCCTCCGCTAAACTGGCATCGCCGCCCGCCGTCCTACACCATGGCGTTCCGTACACGCTACAGGAGCGTAGACGCCGTACCTGCCCCCAACCGCTACACCCTGCCCAACCTGTTGGGTTCGCGTATTCCCAACAAGCCCTCCAGCGCCAGCTACTCCATGTCCCGCCGCATGAAACCCGGGGCGCCCTCCGAGGACCTGGCAATAACACCCGGGCCGGCTCACTACAACAGAACGGACGCGAGCATCTACATGAAGAGGCAGCCATCTTTCTCCATCCAGAGCCGCCACAACATCCCCAGCGATGCCACGTGCAAGCCTGGACCGGGCACTCACCGCCCGGAGAGAGTGACGGCGCACCTGCCCAGGCCGCCATCTTTCACCATGGGGGTGCGGCATTCGGAGTTTGTCACACCTCTAGTCATCGATTTAACTGACTGAAAAAAGCTACTTTCTGGAgtctataaacacacatggatGATGACATGATGAGGAAGCAAATTTTCACTGTTATTTGTATTTTCAcgtgtaaattatttatatattttattctttagttatagaatatagatagatatatgaCAATATTGACAGTTCTTACTGGTTTAGTcaacttcagaattattggcacctataactatataatatataatgcgTAAGAT

Function

NR:

description
PREDICTED: outer dense fiber protein 3-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937101.2 False 1235 mRNA 0.52 4 30050560 30056408
XM_034303448.1 True 1255 mRNA 0.52 5 30050560 30056720

Neighbor

gene id symbol gene type direction distance location
LOC113540054 NA coding downstream 7549 30037408 ~ 30043011 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding downstream 13494 30025069 ~ 30037066 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding downstream 35995 29903744 ~ 30014565 (-)
brinp3b LOC108267163 coding downstream 151034 29868591 ~ 29899526 (-)
rgs5b LOC108267191 coding downstream 215369 29833662 ~ 29835191 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 7330 30064050 ~ 30084861 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding upstream 155669 30212389 ~ 30223320 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding upstream 536986 30593706 ~ 30701045 (-)
LOC113540512 NA coding upstream 664312 30721032 ~ 30724657 (-)
carmil3 carmil3,LOC108268291 coding upstream 1234101 31290821 ~ 31344984 (-)
G73618 NA non-coding downstream 25524 29976671 ~ 30025036 (-)
G73607 NA non-coding downstream 121071 29929264 ~ 29929489 (-)
G73492 NA non-coding downstream 203669 29846674 ~ 29846891 (-)
G73485 NA non-coding downstream 256916 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 270428 29778555 ~ 29780132 (-)
G73652 NA non-coding upstream 39070 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 44720 30101440 ~ 30102870 (-)
LOC113540631 NA non-coding upstream 72008 30128728 ~ 30138872 (-)
G73670 NA non-coding upstream 130176 30186896 ~ 30191121 (-)
G73684 NA non-coding upstream 138959 30195679 ~ 30197576 (-)
G73619 blvra other downstream 28035 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 319703 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 474833 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 878639 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 1165595 28873578 ~ 28884965 (-)
LOC113540055 LOC108268301 other upstream 684807 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 716729 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1190340 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 1813798 31870518 ~ 31871874 (-)
G74547 NA other upstream 1817589 31874309 ~ 31874827 (-)

Expression


Co-expression Network