ebi3 (LOC108267125)


Basic Information

Item Value
gene id ebi3
gene name LOC108267125
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 30045895 ~ 30050490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937116.2
TCGGAGTGTGTTTACTAACTAatgattaacaaaaaaaaaaaaaaaaaaacccgagATGATCTGTCTGAACTCTTCTGCTGACCTGAAAGTTGATTTCGAAATCATTTATCTTCTCCTGCACTAACAATGCACCTGAAATATTCTTtatatactctctctcttttcgcTTTCTTTCCTCAAATCTGGAGTCGAGACACATCTTCTGAACCAAAGGATGTTTACGTGGCTCTTGGATCGTCTGTGGAGTTGCCCTGTGTAGATGGAAGGAATGGAGAAatatcagaatggagaattaaCGGATCGTTCCTGGTCTCAAGCCCTGCTCTTCGCTTACACAACACCAGCCTTGACGATCAGGGCGTCTACACATGCCATGACTCAAATGGAGAAATCGTGGAAACAGTACGACTGCAGCTGGGCTATCCTCCATCCCTACCAGACGTCCACTGCTGGTCGCCGAGTTATCCCCTAAAAGCCCTGTGCTCATGGAGTCTGCCGCAAGACCCGATACTGCCAACCCATTACATCTCAACCTACAGGCTTCGTGACGATGTCTGTTCATGCCAGAGACAGAGCGAACAGGACAGGCAATGTGTTCTCGAAGAACTGGACCTCTTCTCGAACGTGCCGTACCTGGTTAACATCACAGCTGTCAACGCTCTTGGGAGCGCAAGCCGCGTCCTGCCTGTCATTTTCGAGGACATCGTGAAGCCTGACCCCCCTGTTAACGTGAAGGTGACGGCTTTACCAGGCAAGAAGCTCCACGTGCAATGGGCTCCTCCACCAACATGGCCAGACCCTGTGAACTTCCCCCTGAAATACAAAGTGCAGTTCCGATGGGGAAACGCTAATGCAGATAGCATTATGGGTCCCATTGAGTCAGAAAGCATGGTTCGGAGTGGAGTCATGCCCGGACGGACGTATCATATCCGTGTATCTGTTATGGACCACTTGGGTCACGGTCAGAGCAGCGAGTGGAGCGACACCGTGAACATTACCTTGCCCAGAAGCTGACCCAAACCCACTAAGAGacaaaacacatgaacaaaGCCAAGTAATTTAGGATGTTTTTACACCATAAGTTTGATTTAACTGGTCACACACAGTCTGTGAACGCAAACCTGAAAGCTAATTTAAAGCTCTACAGTACCAAGATGTTTCATCAGATtggcaaatttaaaaataaataaaattaaatggaaaaaaaaaatgcatttgcaaCACTCGTTCATCAGCCAGTCAGTCAagccataaaataaaactgcaagCTGTACAGTCAACTCCATgaagaacaaaaagaacatgatttttaaaaataacattgtttaaaattaattaattaattacttaataataataataataataatgtaattaagcattaattcaatatttatattaatattattttaagtaattattatgtataaatttaataataataataataataataataataattttcctcTTATTATGTATGCGGCAAAATTACGTCAATAAAAATAACGTCACTAGCA

Function

NR:

description
cytokine receptor precursor

GO: NA

KEGG:

id description
K24476 EBI3, IL27B; interleukin 27 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937116.2 True 1520 mRNA 0.41 6 30045895 30050490

Neighbor

gene id symbol gene type direction distance location
blvra blvra coding upstream 23324 30014655 ~ 30022571 (+)
rgs13 LOC108268340 coding upstream 44550 29998504 ~ 30001345 (+)
rgs1 LOC108267137 coding upstream 56460 29986185 ~ 29989435 (+)
rgs18 LOC108268317,LOC108428888 coding upstream 69604 29967671 ~ 29976291 (+)
LOC113539887 dbt,LOC108267843,LOC108411488 coding upstream 284923 29752071 ~ 29760972 (+)
keap1a keap1a,LOC108268010,LOC108428896,LOC107721712,LOC107690048,LOC107588875,LOC107749088 coding downstream 47215 30097705 ~ 30109835 (+)
zgc:110158 zgc:110158,LOC108267812,LOC108428898,LOC107678694,LOC105906991,LOC107690032 coding downstream 88513 30139003 ~ 30194574 (+)
znf622 znf622,LOC107721690 coding downstream 149204 30199694 ~ 30204010 (+)
d2hgdh d2hgdh coding downstream 154708 30205198 ~ 30211975 (+)
otomp otomp,LOC108267868,LOC108428860,LOC107602611,LOC107690301 coding downstream 174553 30225043 ~ 30237040 (+)
G73533 NA non-coding upstream 13107 30032310 ~ 30032788 (+)
G73512 NA non-coding upstream 115727 29929938 ~ 29930168 (+)
G73185 NA non-coding upstream 251690 29792516 ~ 29794205 (+)
G73169 NA non-coding upstream 279789 29765120 ~ 29766106 (+)
G73155 NA non-coding upstream 312532 29732651 ~ 29733363 (+)
G73564 NA non-coding downstream 33948 30084438 ~ 30084819 (+)
G73545 NA non-coding downstream 60122 30110612 ~ 30111156 (+)
G73567 NA non-coding downstream 61899 30112389 ~ 30112630 (+)
G73568 NA non-coding downstream 67516 30118006 ~ 30118492 (+)
G73571 NA non-coding downstream 72533 30123023 ~ 30123250 (+)
zgc:153115 LOC108268059 other upstream 364720 29673514 ~ 29681175 (+)
asip2b NA other upstream 422098 29619993 ~ 29623797 (+)
fubp1 fubp1 other upstream 849746 29181767 ~ 29196149 (+)
G72873 NA other upstream 1133791 28874356 ~ 28912104 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other upstream 1248736 28792847 ~ 28797159 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other downstream 404267 30454757 ~ 30478293 (+)
G73944 NA other downstream 695641 30746131 ~ 30767132 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other downstream 1011240 31061730 ~ 31097929 (+)
c4h22orf39 c7h22orf39 other downstream 1300711 31351201 ~ 31353144 (+)
LOC113540067 NA other downstream 1709399 31759889 ~ 31776798 (+)

Expression


Co-expression Network