acox3 (acox3)


Basic Information

Item Value
gene id acox3
gene name acox3
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16054528 ~ 16071692 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937123.2
GAAACATTACTACATTACTGAACATTACAGAACACAACCGAAGTAGAAGACGCAGATTCACAGCAAGCTTGGGCCCAAGAAAATGGATTTGTCTAAAGAATTCCCAGAGCTTCCCAGTGGTCCTTTAGATGTATACAGAAAAAGGGCATCCTTCAACTGGAAGGAAATGCTGAGGgtcctggagggtgaggaaatAATTGCTTTCAagCAGCAAATTTTCCACACCCTAGAGAACGACCCGCTCTTTGCCAGGCAGCCGGGTGAGGATGTCTCGGTGGAACGGAGGAGAGAGCTCACTTTTCGCCGCTGCAAACAGCTGTTTAAGTACAACTTCCTGACCCAGGATGAGATGATGCAGAATCCATGGAAGGTGACGGTCCTCAACGACTGCCTGGGCATGTACGACTGGTCCTTAGGGGCCAAGTTCTTCCTCAACAAAGGGatgTTTGCACGTACTGTGGCTAGCTCTGGATCTCAGAGGCACTTCAAATTCTTGCAGGATACTGAAGATATGATGATATATGGATGTTTTGCGCTGACAGAACTGAGCCACGGCAGCAACACAAGGCTCATGAGAACAACAGCTTCATATGACCCCAGCAGCCAGGAGTTTGTAATAAACTCCCCAGACTTCGAGGCAGCAAAATTCTGGGTTGGAAACCTAGGGAAAACTGCCACCCATGCTGTTGTGTTTGCCCAGCTTTACACACCTGATGGAGTTTGTCACGGCCTGCACTCATTTGTGGTTCAGGTTAGAGATCCCAAAACGTTACTAGCAATGCCAGGAGTAATGGTTGGAGACATGGGAAAGAAATTGGGCCAAAACGGACTAGACAACGGTTTTGCAGTTTTCCACAATGTGAGGATCCCTCGGGAAAATCTACTCAACAAAACTGGAGATGTGACGCCTGACGGACAATACGTGACTCCTTTCAAGgaCCCTAATAAACGCTTTGGGGCCTCACTGGGTGCCTTGTCTGGAGGAAGAGTGTCCATAACGAGAATGGCAGTGGTAAATCTGAAGTTGGCCTTGACGATCGCTGTGCGTTTCTCAGCTACACGACGCCAGTTTGGGCCTAAAGATGATGAAGAGATCCCAGTACTGGAGTACCAGCTACAGCAATGGCGACTTATACCATATGTGGCAGCGGTCTATGCATTGGACCTGTTCTCCAAATCCTTTTACATGAACTTTGTGGAGTTTCAAATTGGTCTCTTGATGAAGGACAGCAGTGACAGACAGGCTGAGCTAGGTAGAGAGATTCATGCCATGTCGTGCTCCAGTAAGCCTCTAGGTTCATGGACGGCTCAGCGGGGCATTCAGGAATGCCGTGAAGCCTGTGGAGGACATGGATACCTGGCCATGAACCGCCTCGGAGACATCCGTGATGACAATGACCCGAACTGCACATATGAGGGGGACAACAACGTCCTTCTGCAACAAACTAGCAATTACCTGCTTAGCCTGCTCCAGCACCAGCAGCAAGGTAAAGGAAGGATTGAGTCTCCTCTGGAGACAGTGAACTTCCTGGATGACTGGAAAAGAATTCTGGAAAGCAGGTTCACAGCTGCCTCAGGAGAGGAGTGCATGGACTCAGCAGTGCCTCTGGCAGCATATAAGTGGCTGGTATGTTTCTTGCTGGGGGAGAGTCAGAGGAAGCTGAGCGAGCAGAGAGCTCTGGGGATGGGAGACTTTGAGGCACGCAACAACAGCCAGGTGTATTACTGTCGCTCATTGGCAATAGCCTACATTGAGCACACAGTTCTGCAGCGCTTCCATGATGTGACTCGGGATGACCAAACTCCACCAGGTGTCAGATCAGTTCTGAGGAGGCTGTGTGCTCTCTACGGGCTCTGGACCCTCACCAACCACATGGCCATTCTCTACCAAGGAGGCTATTTGTCTGGAAAAGAGCCAGCTGACTTCATGCAGAATGCTGTCCTCTGTCTCTGTAGGCAGCTCAAAGATGATGCTGTGGCTTTGGTTGACGTAATCGCTCCTCCTGACTTTATTCTGAACTCACCCATTGGCAACGCTGATGGTGAGCTCTATAAGAATTTGTGGGCCGCTGTCATGCAGGGGAAGAATGTTCTGGAACGTCCATCTTGGTGGGCAGAGTTCTGCTCTGACAAGCCAGTATTGGGATCCCTCCGAGCCAAGCTCTAGTGTACAGAGAAGGTCTGATGTGTTCTCCTAAACATTCTACCTTGGCATAATGCCCAAACACTAAAACAAATGTTAACAGGGGAAAAACCTTCCTTATTCACACCTCTTGTCTGTTATGTTTAAATTTCACAGGCCACCAAAGAGCAATGACATTAGtgcaggttttaaaaaaaaaattaattaataataataataataataataataataataataattagcatgATGCATTGTTGTTTTGTGCCTTGTAACATAACACACTATAGGGTGccttttatcattttattttatcatgttggtaattatattaaattcatgtatattgaattattatattaaattagtaTATTGATCAGTTGTGAGATTTGTGCAATAGTGTTAGCTGTAAAAGAGACACACTTTGCATAGCATAATAGCATAATTGCTCTTATCTTAATATTACATCAGTAAATTATGCTTAATCAACActtttgcaaaaataaacattaaatcataaaaacaa
>XR_003404041.2
GAAACATTACTACATTACTGAACATTACAGAACACAACCGAAGTAGAAGACGCAGATTCACAGCAAGCTTGGGCCCAAGAAAATGGATTTGTCTAAAGAATTCCCAGAGCTTCCCAGTGGTCCTTTAGATGTATACAGAAAAAGGGCATCCTTCAACTGGAAGGAAATGCTGAGGgtcctggagggtgaggaaatAATTGCTTTCAagCAGCAAATTTTCCACACCCTAGAGAACGACCCGCTCTTTGCCAGGCAGCCGGGTGAGGATGTCTCGGTGGAACGGAGGAGAGAGCTCACTTTTCGCCGCTGCAAACAGCTGTTTAAGTACAACTTCCTGACCCAGGATGAGATGATGCAGAATCCATGGAAGGTGACGGTCCTCAACGACTGCCTGGGCATGTACGACTGGTCCTTAGGGGCCAAGTTCTTCCTCAACAAAGGGatgTTTGCACGTACTGTGGCTAGCTCTGGATCTCAGAGGCACTTCAAATTCTTGCAGGATACTGAAGATATGATGATATATGGATGTTTTGCGCTGACAGAACTGAGCCACGGCAGCAACACAAGGCTCATGAGAACAACAGCTTCATATGACCCCAGCAGCCAGGAGTTTGTAATAAACTCCCCAGACTTCGAGGCAGCAAAATTCTGGGTTGGAAACCTAGGGAAAACTGCCACCCATGCTGTTGTGTTTGCCCAGCTTTACACACCTGATGGAGTTTGTCACGGCCTGCACTCATTTGTGGTTCAGGTTAGAGATCCCAAAACGTTACTAGCAATGCCAGGAGTAATGGTTGGAGACATGGGAAAGAAATTGGGCCAAAACGGACTAGACAACGGTTTTGCAGTTTTCCACAATGTGAGGATCCCTCGGGAAAATCTACTCAACAAAACTGGAGATGTGACGCCTGACGGACAATACGTGACTCCTTTCAAGgaCCCTAATAAACGCTTTGGGGCCTCACTGGGTGCCTTGTCTGGAGGAAGAGTGTCCATAACGAGAATGGCAGTGGTAAATCTGAAGTTGGCCTTGACGATCGCTGTGCGTTTCTCAGCTACACGACGCCAGTTTGGGCCTAAAGATGATGAAGAGATCCCAGTACTGGAGTACCAGCTACAGCAATGGCGACTTATACCATATGTGGCAGCGGTCTATGCATTGGACCTGTTCTCCAAATCCTTTTACATGAACTTTGTGGAGTTTCAAATTGGTCTCTTGATGAAGGACAGCAGTGACAGACAGGCTGAGCTAGGTAGAGAGATTCATGCCATGTCGTGCTCCAGTAAGCCTCTAGGTTCATGGACGGCTCAGCGGGGCATTCAGGAATGCCGTGAAGCCTGTGGAGGACATGGATACCTGGCCATGAACCGCCTCGGAGACATCCGTGATGACAATGACCCGAACTGCACATATGAGGGGGACAACAACGTCCTTCTGCAACAAACTAGCAATTACCTGCTTAGCCTGCTCCAGCACCAGCAGCAAGGTAAAGGAAGGATTGAGTCTCCTCTGGAGACAGTGAACTTCCTGGATGACTGGAAAAGAATTCTGGAAAGCAGGTTCACAGCTGCCTCAGGAGAGGAGTGCATGGACTCAGCAGTGCCTCTGGCAGCATATAAGTGGCTGGTATGTTTCTTGCTGGGGGAGAGTCAGAGGAAGCTGAGCGAGCAGAGAGCTCTGGGGATGGGAGACTTTGAGGCACGCAACAACAGCCAGGTGTATTACTGTCGCTCATTGGCAATAGCCTACATTGAGCACACAGTTCTGCAGCGCTTCCATGATGTGACTCGGGATGACCAAACTCCACCAGGTGTCAGATCAGTTCTGAGGAGGCTGTGTGCTCTCTACGGGCTCTGGACCCTCACCAACCACATGGCCATTCTCTACCAAGGCAGCTCAAAGATGATGCTGTGGCTTTGGTTGACGTAATCGCTCCTCCTGACTTTATTCTGAACTCACCCATTGGCAACGCTGATGGTGAGCTCTATAAGAATTTGTGGGCCGCTGTCATGCAGGGGAAGAATGTTCTGGAACGTCCATCTTGGTGGGCAGAGTTCTGCTCTGACAAGCCAGTATTGGGATCCCTCCGAGCCAAGCTCTAGTGTACAGA

Function

symbol description
acox3 Predicted to enable fatty acid binding activity; flavin adenine dinucleotide binding activity; and pristanoyl-CoA oxidase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA oxidase and lipid homeostasis. Predicted to act upstream of or within fatty acid beta-oxidation. Predicted to be active in peroxisome. Is expressed in liver and male organism. Orthologous to human ACOX3 (acyl-CoA oxidase 3, pristanoyl).

NR:

description
peroxisomal acyl-coenzyme A oxidase 3 isoform X1

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005777 peroxisome cellular_component
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function
GO:0003997 acyl-CoA oxidase activity molecular_function

KEGG:

id description
K00232 E1.3.3.6, ACOX1, ACOX3; acyl-CoA oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937123.2 True 2669 mRNA 0.46 18 16054528 16071692
XR_003404041.2 False 2111 misc_RNA 0.50 18 16055022 16071692

Neighbor

gene id symbol gene type direction distance location
LOC113540081 LOC108267731 coding downstream 23612 16028179 ~ 16030916 (-)
tdrd7b tdrd7,LOC103364796,LOC102294308,LOC108428553 coding downstream 36636 16002159 ~ 16017892 (-)
rbpjb rbpj,LOC107597867,LOC107549731,LOC107707427 coding downstream 90560 15918848 ~ 15963968 (-)
trnap-ugg_2 NA coding downstream 178630 15875827 ~ 15875898 (-)
stim2b stim2,LOC107707336,LOC107661953,LOC107684943,LOC107757910 coding downstream 179044 15826058 ~ 15875484 (-)
man2b2 man2b2 coding upstream 2095 16073787 ~ 16085506 (-)
LOC113540382 ccnb1ip1 coding upstream 21231 16092923 ~ 16098115 (-)
oxa1l oxa1l coding upstream 48690 16120382 ~ 16125010 (-)
zgc:194655 LOC108267492 coding upstream 69108 16140800 ~ 16141971 (-)
LOC113539957 NA coding upstream 86695 16158387 ~ 16191569 (-)
G65267 NA non-coding downstream 72255 15981736 ~ 15982273 (-)
G65253 NA non-coding downstream 94161 15906094 ~ 15960367 (-)
G65260 NA non-coding downstream 129367 15924454 ~ 15925161 (-)
G64964 NA non-coding downstream 852983 15201298 ~ 15201545 (-)
G64929 NA non-coding downstream 1085989 14967207 ~ 14968539 (-)
LOC113540579 NA non-coding upstream 121400 16193092 ~ 16196596 (-)
G65416 NA non-coding upstream 184259 16255951 ~ 16260298 (-)
G65422 NA non-coding upstream 191233 16262925 ~ 16264165 (-)
G65423 NA non-coding upstream 195544 16267236 ~ 16267546 (-)
G65445 NA non-coding upstream 228304 16299996 ~ 16300708 (-)
smim20 NA other downstream 62543 15973579 ~ 15991985 (-)
tbc1d19 tbc1d19,LOC107660707 other downstream 150173 15879471 ~ 15904355 (-)
G64436 NA other downstream 1810847 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 2614008 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 2746050 13285999 ~ 13308478 (-)
tnfsf12 tnfsf12 other upstream 347472 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 520870 16592562 ~ 16594505 (-)
bmp15 LOC108267203 other upstream 532117 16603809 ~ 16605717 (-)
G66053 NA other upstream 1328902 17400594 ~ 17402464 (-)
rnaseka LOC108267746 other upstream 1367785 17439477 ~ 17444188 (-)

Expression


Co-expression Network