taf6l (taf6l,LOC107660726,LOC107679290,LOC107731936)


Basic Information

Item Value
gene id taf6l
gene name taf6l,LOC107660726,LOC107679290,LOC107731936
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20570371 ~ 20577481 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937126.2
CAGACTTGCAACCAATCAGGtcttttattttgaagtgaTGGAATATGGCGCACATCGAAAGCTAAAAGGTAGAGATTAACTTGGCAAATGGACAGCAAGAAGTTCGTGTATTTCCTAATATCCGAACCCTGACTAATAAGACGGGTGAAAAGCTACCAGATTAACTAGCGTTGTTAAAAGCAGTGAATTTCTCGGTGTAGCTGCTGTCTTGGGGTACTTTTCTGGGGTTTttctttacacatttataaactCCTGGTTGGTCTATAtagtgcctgtgtgtgtatataacaaGCTCGCGCGCGGTTCATGAGTCTAGCTAGCACAGCGCCTGCTCTCCTTATGTGATGCTCTACGTTAGCACCTTATTAAAGCTGAAAAGCTGACCGTGTTTGCGTTTGGACGCTTATCGTGAAGATGACTGAGAGTAGAGAAGAGCGTCGTTTCGCTGAAGTATCCCGAGACTCCATCAGACTGATGGCGGAGAGCGCCGGGGTCGAGCTGGGTGAGGAGTTAGCCTCGATGCTCGCCGAGGACGTGTGTTACCGCCTCAGAGAAGCGACACAGAACAGCTCACAGTTCATGAGACACGCCAAGAGACGCAAACTGACTGTAGAGGACTTCAACAGAGGACTGCGCTGGAGCAACACTGAGgTTATTTGCGGTTACGGTGCCCAAGATGCCGTACCATTCCGTCCGCTGAAAGAGGGCGATCTTTTCTTTGTTGAGGATCGAGAGGTTAACCTGGTCGAGTTGGCTCTTGCCACCAACATTCCCAAGGGATGTGCTGAGACAACAGTGCGAGTGCATGTGTCTTATCTCGATGGAAAAGGAAATCTGGAACCTCAGGGCACAGTCCCCAGTGCTGTACAGTCTCTGTCAGATGACCTACTCAAGTATTACCAGCAGATCACTAGAGCCATATTAGGAGAGGATCCACATCTTATGAAGGTTGCTTTAATGGATCTTCAGTCCAACTCCAAGATTGCCGCTCTCCTGCCTTATTTTGTTTATGTCATCAGTGGGGTGAAGTCTGTAAGTCATGATCTGGATCAGCTGAACCGGCTGTTGCACATGGTGAAGAGTCTGGTTCAGAACCCATACCTGTATCTTGGCTCCTATGTGCGCAGTCTGGTTTCCAGCGTCATGTACTGCATCCTGGAGCCACTTGCCGCATCTATTAATCCACTCAATGACCACTGGACCCTGAGGGACTACGCTGCTCTGCTTCTCAGCCATATCTTCTGGACTCACGGTGATCTGGTGAGTGGATTGTACCGTCAGATTCTGTTGTCACTGCAGAAAGTCCTGTCAGACCCAGTGCGTCCTCTTTGCTCTCACTATGGAGCTGTGGTCGGCTTGCACGCTCTCGGCTGGAAGGCTGTAGAGCGTGTGTTGTATCCCCACCTGCCTGCCTACTGGGCGAATCTGCAAGCCGTGCTGGATGATTACTCTGTCTCTAATGCGCAAGTAAAAGCAGATGGGCACAAAGTCTATGGAGCCATTCTGGTGGCGGTGGAGCGTCTGCTAAAAATGAAAGCTGTGAGTTTGACTGCAGAAGGGGGTCCAGCTGCTCTTCAGAGTTCTGCGGGAGGAGGGATGTGCTTCAGAGAGAGCTCACCAGGCCTCAGTCCCCCTCCTGAACCCCTCTCTGAAGCCCCTCTGGGTATCGCAAGCCACTTGCAGGCAGCTGGAACAGGATGCCAGTGGGAGGAGTGGAcccctgtctctctgcctgccaTGTACTGTGAGCTCTACTCCTTCTTTGGAGACAGTTTGGCTGTGCGTTTTAGCACAGGGCCTGCATTAGGCAGTGCACCACCTGCAGCCCCAGTGCAACCTTCTGATGCCAGGAAAGAGTCGGGGAGTGGCGCAGGCAGCATGGAGAGCACACGCAAGATGCCACAGCTCACTGCTAGCATGAACCTCAGCCCCAGACCAGATGGAAGCCCACGTACTGAGACTGTACCACCTACTCTGGGTGCTACTGCATCAGGGAGGTCTCTGGCAcgctcttcttcctcctcctcatccgcAGTCCCTCGTTCCAGGTCCTCCTCCCGTCCAGGGCGTTCTGCCAGCCAGTCAAGAGACATCTTCCCAAAAGCTCGTTTCCTGCCTTCCCAGGTGGGGCCTCCAGCCTTCTCCTTTTTGATTGGTGGGCGACAGATGGGCCGGCGATGCCAGGGACGACGTTTCCAGACGAGCTTCACTCCAACTCCATCCGTCAGCTCCCTTCCTCCACGGGCCTACGCCCACAAACTGCCAGTCATCGGGAGAGTGAGCAAACCAGTGAGGCGCTGGACGTGCTCTCATTATTCACTGTATCTGCCTCTTTAaggcacacagagacactgggTTGGCTGGTTGTACTGTGGAACCAGCTACTTAAGCTTCCTCATGAACTGTTTCCCCCTTGAACTCTTTAAAGCACTAGATTTAGAAAGAACAGCTGCATAACTGTTCTTAGGCTGACcacagacatgtttttttcaaCACACCATGACCTTAATACCAGCAGTTAGATTTATTTGTGAAATACTTTTTTGTTGGTTGTCTTTCAAGACGTTGTATCATGTAAGTggaaatattgtaaaataaagcCATGCACACAGTGAG

Function

symbol description
taf6l Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be part of STAGA complex. Orthologous to human TAF6L (TATA-box binding protein associated factor 6 like).

NR:

description
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937126.2 True 2616 mRNA 0.51 11 20570371 20577481

Neighbor

gene id symbol gene type direction distance location
cth1 cth1,LOC108268299,LOC108440851,LOC103030689 coding upstream 318 20567906 ~ 20570053 (+)
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding upstream 4954 20549680 ~ 20565417 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding upstream 25623 20504764 ~ 20544748 (+)
si:dkey-28a3.2 LOC108267583 coding upstream 73616 20485644 ~ 20496755 (+)
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding upstream 90574 20458841 ~ 20479797 (+)
LOC113539982 LOC108267206,LOC108440832 coding downstream 2293 20579774 ~ 20582012 (+)
ehbp1l1a LOC108267830 coding downstream 10131 20587612 ~ 20630986 (+)
si:ch73-40a2.1 LOC108267785 coding downstream 59747 20637228 ~ 20649186 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding downstream 75094 20652575 ~ 20660555 (+)
rce1a rce1,rce1a,LOC107683501,LOC107731886,LOC107679240,LOC107710076 coding downstream 105227 20682708 ~ 20692222 (+)
G67958 LOC108267586 non-coding upstream 88616 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 294696 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 604483 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 653202 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 655968 19911739 ~ 19914403 (+)
G68054 NA non-coding downstream 57867 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 114782 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 287397 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 611050 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 628264 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 415594 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 503151 19990684 ~ 20067220 (+)
G66864 NA other upstream 1711719 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2361807 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2426740 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 442777 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 736737 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1051595 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1174935 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2072329 22649810 ~ 22652447 (+)

Expression


Co-expression Network