cth1 (cth1,LOC108268299,LOC108440851,LOC103030689)


Basic Information

Item Value
gene id cth1
gene name cth1,LOC108268299,LOC108440851,LOC103030689
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20567906 ~ 20570053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937127.2
GAGACTCAGGCTTCAGTACGTGTGACTTGCCTTGTTCAAGGTGCAAGCCTCGTCTTTCTATTTCTCATTTATGCCATAATcagctttttttccttctctttttcctccccTGTTCTTTTTGGTTGTTCTTTGGAAGCCGTCGTCAAGAAGGTGTACTTTTTAAAGGGAAACAAAAGCATATTGTGGAGACGCTGCTGTATTTATTCAGAAAGCTTCATAACGCACAATGATGTTTGAGACCAGCCAAGATGACCTGCTGCTGTTTCCCTCAGAGGGTAGTGATGAAGCCTTTTTCCCAGCAGAGAGCTTGGCTAGTGGGGGTCAGTCCCTGGCTGAGGCCTTGCTTCCTTTAGTTGagtctccttctcctcctcttaaCCCCTGGCTCTGCTCCACCCGCTATAAGACTGAGCTGTGCAGCCGCTATGCTGAGAGTGGTACTTGCAAGTATGCGGAGCGTTGCCAGTTTGCTCATGGCCTGCATGACCTCCATGTGCCCTCCCGCCATCCCAAGTACAAGACGGAGCTGTGCCGCTCCTTCCACACAGCTGGCTACTGCATGTATGGAAGCCGCTGCCTCTTTGTGCACAGCTTGAAGGAGCAAAGGCCGGTTCGGCACAGGCGTCGCAACGTGCCCTGCCGCACGTATCGCGCATTTGGTGTTTGCCCCTTTGGCACACGCTGCCACTTCCTGCATGTTGAGGGGGGTTCAGAGTCAGATTGTGCTGAAGAGAAGACCTGGCATCCTCCTTCCCGTTCCAGTGAATGGAAACCCCGTGGTGCCCTCTGCCGTACCTTCAGTGCTTTCGGCTTTTGCCTGTATGGCACTCGCTGCCGGTTCCAGCATGGCCTCCCCAATTCAGTAAAGGGCCTTGATTTGACCCAGGCACCCTGGTCACCACAAGTGCCTGGGAGAGCCCTCTCACCTGCTTCAGATATGCAGTCTTCCTCTCCACCCTCTTCCTCAGCCTCCTCATCACCTCAGTCCCTGCTGGCCTCACCTGCATTCCCTGATGATTCTGGTCCAGTCACACCCCCGTCTGCAGAAGTGGTGGCCAACAACGCTTTCGCCTTCAGCAGCCAGCACCTGAATGACCTGCTGCTGCCACTGGCCTTCAGACTACAACAGCTGGAACAAGCTTCTAGTCTAAGTGCTGGCATGCTGGACCAACCACTGCTGCCATAATGTTTATAACGTCAATCCTTTTTGTAAATAAGTCTTGGCTTTTTATTGATGGCCtcttttttgtaactttttttatgGCCTTAATTTGAGATTTTGCAGTCTCATATTTTGGGGGGGATGTTTTTTACTGCTACTTTGCTTGTCAAGTCTGTCCCAATTTGTGGCAAGTCTATTATAATGCATTGGACTattgtaaattgtattttaacccattgtgtgtgtgtgtatatatggagCCTTTGGGACACAGTGTGAATGTCTTATTTAtggattttaatttaaattgtgGTACTTAAATTATTGTTTCAGGATTGGCGCAGTTTGCATCCTTTGATCTTAATAAAACCACTAACCTTTGTTAGTGCTGTTCTCGGTAAAAA

Function

symbol description
cth1 Predicted to enable metal ion binding activity. Is expressed in several structures, including axis; germ ring; margin; oocyte; and presumptive shield. Orthologous to human ZFP36 (ZFP36 ring finger protein).

NR:

description
mRNA decay activator protein ZFP36L2-B-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937127.2 True 1566 mRNA 0.49 2 20567906 20570053

Neighbor

gene id symbol gene type direction distance location
mta2 mta2,LOC107679264,LOC107660724,LOC107709145,LOC107731904,LOC107558444 coding upstream 2489 20549680 ~ 20565417 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107660723,LOC107709062 coding upstream 23158 20504764 ~ 20544748 (+)
si:dkey-28a3.2 LOC108267583 coding upstream 71151 20485644 ~ 20496755 (+)
rtn3 rtn3,LOC108267754,LOC108440822,LOC103032175,LOC107679257,LOC107731898 coding upstream 88109 20458841 ~ 20479797 (+)
rgs12a LOC108268015 coding upstream 156250 20378775 ~ 20411656 (+)
taf6l taf6l,LOC107660726,LOC107679290,LOC107731936 coding downstream 318 20570371 ~ 20577481 (+)
LOC113539982 LOC108267206,LOC108440832 coding downstream 9721 20579774 ~ 20582012 (+)
ehbp1l1a LOC108267830 coding downstream 17559 20587612 ~ 20630986 (+)
si:ch73-40a2.1 LOC108267785 coding downstream 67175 20637228 ~ 20649186 (+)
rab1ba rab1ba,LOC103373258,LOC107679256,LOC100695098,LOC108242295,LOC106532007 coding downstream 82522 20652575 ~ 20660555 (+)
G67958 LOC108267586 non-coding upstream 86151 20480600 ~ 20481755 (+)
G67827 NA non-coding upstream 292231 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 602018 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 650737 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 653503 19911739 ~ 19914403 (+)
G68054 NA non-coding downstream 65295 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 122210 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 294825 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 618478 21188531 ~ 21189134 (+)
G68304 NA non-coding downstream 635692 21205745 ~ 21209324 (+)
fcer1g LOC100305060 other upstream 413129 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 500686 19990684 ~ 20067220 (+)
G66864 NA other upstream 1709254 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2359342 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2424275 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 450205 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 744165 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1059023 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1182363 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2079757 22649810 ~ 22652447 (+)

Expression


Co-expression Network