si:dkey-32m20.1 (LOC108267269)



Basic Information


Item Value
gene id si:dkey-32m20.1
gene name LOC108267269
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23105623 ~ 23109703 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026937129.2
TGCACCTGACTTGGCTATCACTCTGTTACTGACTTTGTTCATTCTGGACTATTTTCCCACCAAGTCAGGATGCCTTCTGGAAGGATAGTCAAGCTTATCCTGTATGAGGTGTTAGAgtttgcatgtctgtgtgtgcctgtgtttgTGGTTCTGGAGCGATTTGCGTCGCTTCTAAGCTTTGAGAAATTCAACGACAGTACGGCTTACTGGTTGGTAGTGGCAGCATCCATAGCCTATGTGACCTCTGTGTCCTTGTTTGTCTGGGTGCCACTGAAGTACTTCATCCTGAAGTCCAGGGGGTTCTTTAAAGAAGTTACTAACTGGAGACCTGTGACTCTTGCCCAAGCACTTCTCTGCACGCTACCATGTTTTGCCATTCTCATTGCCAGCTCAAAGGTTCAGCTGGACACAGGAATTTTCTATGGCCACTTTAGTGAGCTTCCTGTCTCACTGGTGCTCTTTGCCCTCATCTGCGTGGACATTGTAGAGAGAATTCGTCCATATCGCCTGAGAGGACAAGATAGTCTGGACTTTGAGGTTCCTGGCCCTTTTCTGACTCACCTGGAGCAGGTGTCTACTGTGTCATCACAACTGCAGGCTAACAGAAGTGCAAATGGCTCGGCGCTGAGGTCAGAAGGCATAAGCACATCACCGTCAGGACACTGGGCAGACATGGATGGCATCTCACGTTCTTCCAACATGGCCTACTTGTACTCCTCCCACTCTGACTCAGGCTTTCTTCGCTTCATCTGGGTTCGAGACCCTCGCCATGAGCTCTTCCTGGAGACATTTGTGTTCTGGATGGACACAGTGGAGATGATCAGAGTGGCTGGGGTTCAGGAGGTCTACAACTCAAACTGGGTCTTTCCTATCTACATCCTAagctttttctccattctgcGTGTGGTTGTAACTCCTAACAATCCAATGCTGGCTTCATTAGGAGTGGTAGCACAGGACCTGCCCTTCCTGGTTTTACGGATCTGCCTGGTGATTGTCTTTGGTTATGTGACTCCAATACTCTATATCATGAAGAATCTGCTCATATGTCTGACTTTTGTTTACTTTCACTTCCTAACCAAGCTGAAGGTGTTTAGCGGAGGAAGCATGTACTGAGACCTCTGGGGTGGGGAAGCTACTGGGGACTGCTTTGGGTAAAGAAATGTACAGGGTGGATACTAACAACTACTAATAGCACTGAACACACTATTTTTTCACTTATATTACTACAGAGAAGAAGACAAACTAGTAAGGCGAGTCCacacatagttttttttttttaagtaatgtaAG

Function


NR:

description
PREDICTED: transmembrane protein 236-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026937129.2 True 1293 mRNA 0.47 4 23105623 23109703

Neighbor


gene id symbol gene type direction distance location
LOC113540574 stam,LOC108267818 coding upstream 1835 23054500 ~ 23103788 (+)
yes1 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 67469 22999911 ~ 23038154 (+)
lpin2 lpin2,lipin2,LOC108413408,LOC107686047 coding upstream 267784 22808862 ~ 22837839 (+)
myom1a LOC108268132,LOC108440660,LOC107664077,LOC107732591,LOC107556630 coding upstream 299689 22776639 ~ 22805934 (+)
bag1 bag1,LOC107746903,LOC106569734 coding upstream 330869 22770973 ~ 22774754 (+)
cacnb2b cacnb2b,LOC108267179,LOC107713974,LOC107686054 coding downstream 14477 23124180 ~ 23144086 (+)
si:ch211-106h4.4 NA coding downstream 72167 23181870 ~ 23214191 (+)
si:ch211-106h4.6 LOC108267631 coding downstream 105372 23215075 ~ 23230453 (+)
ackr4a LOC108267630 coding downstream 163820 23273523 ~ 23276801 (+)
rnf182 rnf182 coding downstream 235355 23345058 ~ 23349627 (+)
G69294 NA non-coding upstream 101521 23001998 ~ 23004102 (+)
LOC113540593 NA non-coding upstream 166882 22926810 ~ 22938741 (+)
G68999 NA non-coding upstream 578067 22527328 ~ 22527556 (+)
G68954 scrib non-coding upstream 708522 22392839 ~ 22397101 (+)
G68955 NA non-coding upstream 717878 22383094 ~ 22387745 (+)
G69443 NA non-coding downstream 174851 23284554 ~ 23284926 (+)
G69449 NA non-coding downstream 181707 23291410 ~ 23291998 (+)
G69514 NA non-coding downstream 221330 23331033 ~ 23331529 (+)
G69522 NA non-coding downstream 257958 23367661 ~ 23368677 (+)
G69570 NA non-coding downstream 337760 23447463 ~ 23457206 (+)
LOC113540463 NA other upstream 453176 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1343322 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1465466 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 1781656 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 2071870 21020258 ~ 21033753 (+)
G69509 LOC108267411 other downstream 208801 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 918403 24028106 ~ 24106223 (+)
G69971 NA other downstream 999092 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1749323 24859026 ~ 24871263 (+)
tnr tnr other downstream 2598124 25707827 ~ 25881110 (+)

Expression



Co-expression Network