dars2 (dars2,LOC107658301,LOC104960769,LOC104948518)


Basic Information

Item Value
gene id dars2
gene name dars2,LOC107658301,LOC104960769,LOC104948518
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25021613 ~ 25047317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937138.2
TGTGTACTAGCGCACTAAACAGTGTGTAAGGATAGTATGCTAGACACAGTGAAGTATTATCTTAGCATACTGtttactacagtagtgtgctGTCTCCGACACCGCTACAGTACAAACTCGTGTTTAGTGTAAGGAACATGAAGTAGGGTACATTTTGAGGATTTCTGTTGACAGTTGTGGCGCAGTTTCTTTCTTTGGAGTATGACGGTTAGATATAAAATTTCACGAATATGAATAAACGCTTCTAGAGAAAGGATAAAGTGAAATGGGAAGGTGACCGTCACGTGACTCGCACGCGCTGTGTACATTATCTGTAGCGGGAGACACCCGAGTGCAGTTTGAGGATAAAACTTACAGTTAAAACTTACAATTCACCACCCGATTTGCTGACATTTTATTAACTGTTTATTAACTTATTCATTTCTTGATAGGGTTAGACAGCTCTTGGTTCGCTCTGTAGGGAAGTAAGTACTATAATGTTTGTAGTCAGAGCCAGGACTTTCCTGTAATGGCCCATAGACGCGCATCAGTGTTGCTGCTAAGGGCTCGCCATGTCCTGCGCTTTTCCCGGCACGCGGCGGTTCCTGTGAGCACGCGCCCCATTTCCGCCTCACAGTCCATCTTCCCACATGTTCCTGCTTCTTCCAGTCATTTCTACAGTAGTACCACTGCAGGTCAGAGCAGTTTCTCCATCCGAAGTCACCTCTGTGGAGAGCTGAGCTCCAGTCTCGTGGGACAGGAGGTTACATTATGTGGCTGGGTTCAGTATCTGAGACAGGATCTGTTTGTGATCTTGAGGGACTTCAGTGGTTTGGTTCAAGTTCTCATCCCACAGGATGAGTCTCAGCGGGAGCTGAAGGATGCGTTCTGTGGTTTATTGGTTGAATCAGTCATCAAGGTGAAAGGAAGAGTCAGGCTTCGTCCAGAGGGCCAGAAGAATACGAACATGTCCACTGGAGAAATCGAAGTGTGTGCCGAGAGCCTGGAAGTGTTGAACACCTGCCGCAAACTGCCTTTTGAGATTAAAGACTTTGTCAAGAAATCAGAAGCTCTCCGGATGCAGTATCGCTATCTCGATCTTCGCTCATCTCAAATGCAGTACAATCTGAGACTGCGATCACGACTTGTGATGAAAATGAGAGACTACCTTTGCAATGTACATGGTTTTGTGGACGTGGAGACCCCAACTCTGTTTAAAAGGACCCCTGGGGGTGCCAAAGAGTTTGTGGTGCCATCTGGAGAACCGGGAATGTTCTTCTCTCTCCCACAGAGCCCGCAGCAGTTCAAGCAGCTTCTGATGGTGGCAGGTCTGGATAGGTACTTTCAGCTGGCACGCTGCTACAGGGACGAAGGCTCCAAACCTGACAGGCAGCCTGAATTCACCCAGGTGGACATTGAGATGTCTTTTGTGGATGCGGCTGGAATCATGGCTCTGATTGAGGGCTTGTTGGAGTACTCCTGGCCAGAAGACAAAGGGACAATCAGTACCCCCTTCCCTTGCTTGACATACGAGGAAGCCATGAGAGATTATGGAGTGGACAAACCCGACACTAGATTTGGAATGAAGCTTGTGGATGTTAGCGAGACGTTCCAGCACACACAGATTGAGTTCATCAGGGACGCCATCGTCCAACCAGGCGGCTGTGTCCAGGCCATCTGTGTTCCAGACGGAGCTaaacactTGAAGGGCAAGGACATGGAGTTCTTGAAACAAGCAGCCAAAACTCAGTTCAACCAGGAGGTGGACTGCATGCTGGTTAGGGCAGAGGGATCCATCAAATCTCCTCTTGGTCGCTTGATACCAGACACAACAAGGCTAcagctgctgctgaagatgaGGGCCAACGCCGGAGACCTGCTCCTCATTGCTGCCGGAGCCCAGGAGCGGGTGcGTCCACTTCTGGGGAAACTGAGATTGCAGTGTGCTGAGCTGTTGGAGGGTCGCGGTGTGCCTGTACGTGACCCTGCGGCCTTTCACTTCCTGTGGGTGGTGGACTTTCCCCTCTTTTTACCTAAAGAGGATGAACCGGAGCAACTGGAATCAGCACACCACCCCTTCACCGCACCCATTCCCGAGGATGCCCACCTGCTCTACACCCAGCCCCACAAGGTGCGTGGCCAACACTACGACTTGGTGCTGAACGGCTGCGAGGTCGGTGGTGGCTCCATCCGCATTCACAATGCCGCTCAGCAGATCTATGTCCTGGAGAACATCCTCAAAGAGGACccgtctctcctctctcaccttTTGGAGGCTTTGGACTCCGGGGCCCCTCCACATGGCGGGATTGCATTAGGTTTGGACCGGCTGGTGTCCATCATCGTGGGGGCTTCCAGCATCAGGGATGTCATCGCCTTCCCCAAGTCCTTCAGAGGTCATGACCTCATGAGCCACGCCCCCAGTTTGTTGCCAGAGGAGGAGCTGAGGCCATACCACATCTCAGTGCTCTGGCCTAGTGCTAAAAATGGACAGGGTGACAAACCCTGACTCTTCCACTGTATATCATCTTCCTGAAACTTCTTGTACCTTGACTCTCTTTGTGAAGAGAGGTAAGAGCAGGAAGCCAACTCCATTTCATGGAGAACTAGAGAAACACTGAGCAATCTCAGAGCTATCAAACCACTTTTTCTGTTAACCACCCTCTTCAGATTTCTGTAACATCTGTActcatgtgaacattaaagaCATTTATTCTTCtccttca

Function

symbol description
dars2 Predicted to enable ATP binding activity; aminoacyl-tRNA ligase activity; and nucleic acid binding activity. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be located in cytoplasm. Orthologous to human DARS2 (aspartyl-tRNA synthetase 2, mitochondrial).

NR:

description
aspartate--tRNA ligase, mitochondrial

GO: NA

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937138.2 True 2705 mRNA 0.50 17 25021613 25047317

Neighbor

gene id symbol gene type direction distance location
klhl20 klhl20,LOC106569069 coding upstream 8307 24994877 ~ 25013306 (+)
kiss1ra kiss1ra,LOC108267265,LOC108411985,LOC107657423,LOC107599909 coding upstream 214209 24792295 ~ 24807404 (+)
zgc:113531 LOC108267389,LOC108430294,LOC106532842,LOC105940236,LOC107081705 coding upstream 424504 24587207 ~ 24597109 (+)
slc6a9 slc6a9,LOC107739827,LOC107730788,LOC107657455,LOC107700995,LOC107557089,LOC107599892 coding upstream 460335 24507205 ~ 24561278 (+)
klf17 LOC108267392 coding upstream 542809 24476189 ~ 24478804 (+)
astn1 astn1 coding downstream 222905 25270222 ~ 25552839 (+)
cop1 rfwd2,LOC107722073,LOC107726924 coding downstream 596085 25643402 ~ 25664410 (+)
mrps14 mrps14,LOC107678929,LOC107726917,LOC107559053,LOC107563590 coding downstream 903837 25951154 ~ 25953899 (+)
cacybp cacybp,LOC100304883 coding downstream 907639 25954956 ~ 25964158 (+)
plk3 plk3,LOC107726922,LOC107557223,LOC107722069,LOC107658359,LOC107678927 coding downstream 926564 25973881 ~ 25979456 (+)
G70520 NA non-coding upstream 23388 24997916 ~ 24998225 (+)
LOC113540553 NA non-coding upstream 172126 24839221 ~ 24849487 (+)
G70204 NA non-coding upstream 271700 24681981 ~ 24749913 (+)
G70142 NA non-coding upstream 435706 24585427 ~ 24585907 (+)
G70140 NA non-coding upstream 436774 24584614 ~ 24584839 (+)
LOC117597084 NA non-coding downstream 280901 25328218 ~ 25330540 (+)
G70695 NA non-coding downstream 509520 25556837 ~ 25557761 (+)
G70763 LOC107732307 non-coding downstream 511110 25558427 ~ 25561346 (+)
G70778 NA non-coding downstream 538009 25585326 ~ 25585534 (+)
G70780 NA non-coding downstream 538936 25586253 ~ 25586458 (+)
kif2c kif2c other upstream 150350 24859026 ~ 24871263 (+)
G69971 NA other upstream 911724 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 915390 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 1701270 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 2369166 22649810 ~ 22652447 (+)
tnr tnr other downstream 660510 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 849700 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 1168747 26216064 ~ 26224038 (+)
G71385 NA other downstream 1181447 26228764 ~ 26229191 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other downstream 1240973 26288290 ~ 26292784 (+)

Expression


Co-expression Network