dvl2 (dvl2)


Basic Information

Item Value
gene id dvl2
gene name dvl2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13399435 ~ 13416861 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937145.2
ATGGCAGAAACCAAAATAATTTATCACATCGACGAAGAGGAGACGCCGTATTTGGTGAAGATTCCCATAGCGGCGGAGAAAATCACTTTATTGGATTTCAAACAAGTGTTGAACAAACCAAACTACAAATTCTTCTTCAAGTCTATGGACCAGGACTTCGGAGTGGTCAAGGAAGAGATTTCTGATGACAACGCTAAGCTGCCCTGCTTTAATGGAAGAGTGGTTTCCTGGcttGTGTCttcagatgttcctgcagcagAACCTGCGCCGCCTCCAGTGGAGGTCCGAGCTCAACCGTCACCGCCTCCTCCCCCCCTTCCGCCTCCTCCAGCTGAGAGGACCGGGGGCATCGGAGACTCAAGACCCCCCTCATTCCATCCGAACGCTGCAGGCAGTGTGGAGACGCTGGATGAACAGACAGAGACTGAGTCTGTCGTGTCCTTCAGGAGAGAGAGGCCTCGCCACAGAGAGAGCATGGAGCACGGGTCACGTATGAATGGTCAGTCACGTATGGAGAGGCACTTGGCAGGTTATGAAAGTGCCACCACAGTGATGAGCAGTGAACTGGAAACCACCAGCTTCTGTGATTCAGATGATGACGACACCATGAGCAGGTTTAGTAGTTCAACAGAACAGAGCACTGCCTCTAGACTGCTAAAGCGCCACCGCAGACGCAGGAAACAGCGTCCTCCAAGGCTGGAGAGGGCATCATCTTTCAGTAGTGTGACAGATTCAACTATGTCTCTGAATATCATCACAGTCACTCTCAACATGGAGAAGTATAATTTCCTGGGCATCAGTATTGTGGGACAGAGTAATGAGCGAGGTGATGGAGGCATCTATATTGGCTCCATAATGAAGGGAGGAGCAGTGGCTGCTGATGGGCGAATCGAGCCTGGGGACATGCTGCTTCAGGTGAATGATATTAATTTTGAGAACATGAGCAATGATGATGCAGTCAGGGTACTACGGGAGATTGTGCACAAACCAGGACCCATCACTCTGACAGTGGCTAAATGCTGGGACCCTTCACCTCAAGGCTACTTTACACTTCCACGTAATGAGCCTATACGACCTATAGACCCTGCAGCCTGGATCACTCATTCAGTAGCCATGACAGGAGCGTACCCACCTTACCCAGGCAGTACAATCACATCCAGCTCATCTGTCACTGAGACTGAACGCTTTGATGAGTTTAACCTGTCTCTTCACTCTGATATGGCATCTGTGGCAAAGGCTATGGCCTCTCCTGAGTCAGGTCTagaagtgagagacagaatgtgGCTAAAGATCACTATCCCTAATGCCTTCCTGGGCTCCGACGTGGTGGAGTGGCTCTACCACCACATAGAGGGCTTTCAGGACCGCAGAGAGGCTCGTAAATATGCCAGTAACCTCCTGAAGGCTGGTTTCATTAGACATACTGTCAATAAGATCACTTTTTCAGAGCAGTGCTACTACATCTTTGGAGACTTCAGCGACTGTGAGAACTACATGGCCAACCTGTCCCTCAATGATAATGATGGTTCCAGTGGAGCTTCAGACCAAGACACACTGGCCCCTCTCCCATTACCAGGGGCGACACCGTGGCCCCTGCTCCACTCTTTCCCATACCAGTACCCACACCCATACTCAAGCCAGCCACCTCCATACCACGAGCTCTCCAGCTACAGTTACGCCCCTGGCAGCACGGGTAGCCAGCACAGCGAGGGGAGTCGGAGCAGTGGCTCCAATCGGAGTGAGGGTGAGAGGAGGAGGGGTAGTAAGAGTGGCAGCACTGTGGCTGGCAGCACACGTGACGACAAATCTCCCAACGGGGGTGACTCACGCTCTGGCAGCGGCAGCGAATCTGAATACTCGGTGCGTAGTAGCCTAAGGAGGGACCATGGCTCAGCCACGCCAAGTGAGCACAGTCATGCTAGTCAGCGCTCGCATCACCGGGCACCGCCCCCTCACCTCGCTCCATACCCACCTGGCATTCCCATTCCATACAACCCCATGATGGTAATGATGGTACCACAGCACCCACATCCACACCCAGCATTGGGAGCTCCTCATCCGCAGACAGCTGGAACGCCTCTACACCCAGGCCTGCCTCCACCCAGTAATCCTGGAGGACCTCCTGGAGCTCCACCCACACGTGACCTGGGCTCTGTCCCACCTGAGCTCACAGCCTCCAGGCAGTCTTTCCACCTGGCCATGGGAAACCCCAGCGAGTTCTTTGTGGATGTCATGTAGAGAAAGTTAACACAggatatgtgtgtctgtgtgtgggatGGATGAGTGAAccagtgagtgattgagtgaatgaatgaaacctCTATGTGACTTAATCATGTAATAACTGTGAGCCTCATTCAGTAAGCGACTGAGATGTAACACTTGGTATTGCTGCAGGATAGCTCTATATAGTTGGCATCTATCCTTGCCGGCAGGAACAGGGTTTCTGTATAAAGCTGGACGTCTTGCACAACTCAGATTTAGCACATCAAGTCATTTTAAAGTAAGTTCATTCTCACCAACAAAATGCATCAGGGTCTGGCCTCCCTAACTgcgctgttttttttgtttttttttaaacatttccaaacatttcctgagactttttttcctgcaaatatttatcaaattatgcaGGGAGCACTATACTCTGAATAACATAGGAATATCTCTGAGGCCTCTTTATATCCTATGAAAATATTTGCCTTGGCAAAACTCATCCTGCCCAAACGTTAGTTCTTTTGATCTctaaatatgtgtttgtgtttctgcatAACCTACCTGCAGAGGTGTgttttcatttgtataaataatgCAGATTATGAAAATCATGTTTTCCATTAGATACTCTTTTCACAGAAAAACTAAGTCAACAAGCAGACAATTTAACtagtatttttgcattttacagaaataaaaaatcaagTTCATAAAGGATTCTGGATGTTTTTGACAAGGCAGCTATGAAGTGGTGTTAGTAAGTTGTATTTTCTCAAATCCTTGCAACCATGAGCTTCCACAGCtgaaatgtttaaacataaGGGGAAGCTTTCTAACATTATGGCATCTAGTACTGAAGGGCTGTTCTTTACAGTACACCTTTGCAGTGtgtaaaatgcattaataaatgacGATAAACTAATGTGAAACAGGGTTTGACTTATAGgattataaacaattttttgaAGGTCATTTTCTCTGGTACTGTGGACTAAAGTTGACTGAAGAGTAATCATGGTCAGAAacgttcaccatcaaacacagcTGCATATGTTGGCAGATTAGAGTTGTGGTACAGACAATGGTACTTGGAGAGGGAGAGTTAATGCCAAAAATGGTACTTATGCTGGGTAGAACAGGCAGTTTTTATAATCATATTTCACATTTCtactcatttttttgtttgtagacTGACAAGCATAATCATTTTtgtatgaatgaatatatgGATATAATCAAAGCATACAGGTGCTAAATGAAGATTGAACAGAACAGTGCCACTTTTGGTGCCATGTTGTTTGTTGTCACTTTTATGTTTCTTACtcaaaataaatttgtaatagAAGAGAA

Function

symbol description
dvl2 Predicted to enable frizzled binding activity. Involved in convergent extension and non-canonical Wnt signaling pathway. Acts upstream of or within cell migration in hindbrain; convergent extension involved in axis elongation; and post-anal tail morphogenesis. Located in cell cortex and spindle. Is expressed in liver. Orthologous to human DVL2 (dishevelled segment polarity protein 2).

NR:

description
PREDICTED: segment polarity protein dishevelled homolog DVL-2

GO:

id name namespace
GO:0021535 cell migration in hindbrain biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005819 spindle cellular_component
GO:0005938 cell cortex cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K02353 DVL; segment polarity protein dishevelled

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937145.2 True 3570 mRNA 0.47 15 13399435 13416861

Neighbor

gene id symbol gene type direction distance location
si:ch73-335l21.2 LOC108268347,LOC108442822 coding upstream 5263 13391809 ~ 13394172 (+)
si:ch73-335l21.1 LOC108267519,LOC105020633 coding upstream 24385 13328033 ~ 13375050 (+)
agfg2 LOC108267520,LOC108442826 coding upstream 72216 13311880 ~ 13327219 (+)
mettl3 mettl3,LOC107659734,LOC107595277 coding upstream 147621 13245985 ~ 13251814 (+)
trip6 trip6,LOC103041331 coding upstream 157035 13232634 ~ 13242400 (+)
acadvl acadvl,LOC107738021,LOC107595296,LOC107731915 coding downstream 3672 13420533 ~ 13436596 (+)
LOC113540489 ponzr1,LOC108267839,LOC108442818 coding downstream 26933 13443794 ~ 13450823 (+)
si:dkey-33c9.6 LOC108267836 coding downstream 69675 13486536 ~ 13500833 (+)
hdac8 hdac8,LOC107707919,LOC107711573,LOC107695331 coding downstream 116956 13533817 ~ 13553948 (+)
rps4x rps4x,LOC103480264,LOC107373838 coding downstream 147867 13564728 ~ 13569599 (+)
G63889 NA non-coding upstream 11481 13387598 ~ 13387954 (+)
LOC117597082 NA non-coding upstream 132401 13258874 ~ 13267034 (+)
G63666 NA non-coding upstream 199573 13199007 ~ 13199862 (+)
G63696 NA non-coding upstream 263575 13135659 ~ 13135860 (+)
G63685 NA non-coding upstream 279758 13119468 ~ 13119677 (+)
G63901 NA non-coding downstream 360 13417221 ~ 13417441 (+)
G63898 NA non-coding downstream 42501 13459362 ~ 13467726 (+)
G63936 NA non-coding downstream 87599 13504460 ~ 13504719 (+)
G63976 NA non-coding downstream 153141 13570002 ~ 13572833 (+)
G63973 NA non-coding downstream 278788 13695649 ~ 13748072 (+)
slc16a13 slc16a13 other upstream 113601 13275462 ~ 13285834 (+)
tmem88b tmem88,bcl6b,LOC108267673 other upstream 179576 13206657 ~ 13219859 (+)
si:dkey-112a7.4 LOC108268066 other upstream 1104302 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1694099 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1794205 11590715 ~ 11605230 (+)
G63903 NA other downstream 1516 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 51691 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 141762 13558623 ~ 13562266 (+)
gc2 LOC108267421,LOC108412585 other downstream 288556 13705417 ~ 13719454 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other downstream 838883 14255744 ~ 14269340 (+)

Expression


Co-expression Network