LOC113540582 (cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060)


Basic Information

Item Value
gene id LOC113540582
gene name cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16367956 ~ 16370957 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937153.2
TAGCTACATTAGTTTCTTAACTAATGACGCACactttaagtgaagtgaagtgatgttAGACACCAAACATGCCTTATCGAGTCCACTGGGTGTAAAGGGgaaactgtaattttttatatataattttttttttcttcaaactgttgctgtaatattttttcctcctttgGAAATCTCTGTGCTGTACAGAAGGGTAGTGTGAGATGTCGCGGTTGCCACAGTAACCACCGTGTGTACATTTCGGCTCCACTGAAATAATAATGGAGGCGTTTTCAGCTAACAGCTAATGCAACTCTTTGGCGAAATTTATCTAAACATATTCTGGTTGTTGCGTTAATATTTCTTAACCAATCTTATTACAATGCCACGTCCGAAGTATTTTACACCAAATGAAGTGTCCGTGCACAATACAGTAGGAGACCTGTGGGTATCGTATCTGGGTAAAGTTTATAACCTGACACCTTTACTTCAGGAGTACAAAGGCGATGTACTTCTGAAACCGATTATTGAAAGTGCAGGCAAGGACATCAGTCACTGGTTTGACCCCAAAACCAAAGATATTCTTACCCATGTTGACCCTTTAACCGGCTGTGTGAAGTATTACACACCCAGGGGGCGTTTTGTGCATGTGCCCCCCACGTGCCCGCGCACTGACTGGGCCAATGATTTTGGGAAGCCTTGGTGGAAAGATATGCGCTACGAAGTTGGCATTCTGACAGCCAAGGCCCGCTGGATCCGTATCATCAACACACTCACTGCCCAGGAACAGAGGTTGGAGGTATGTTCTGAGGAAACACTGAATGAGATTTTGCATCGTTACCTGCGCTACAACTCCCACGCAGCCAGCTACACCTGGAAGCACAACGGTGTCAATCTGGACATGGGTAAAACCTTGAGTGAAAATGGGATTCTTGATGAAGATGAGGAACTGGACCGTTGTCGGATGGATCGTGACCTCTTCACTCCATCCATATGTCTGTACTTCAATGATGATCTCACTGAACTTTGACCTAAGGAGCAGACTATTATCATATACAACACAAATGCTGATATTGCaacataatgaaatatattcattCTAAATTGTAACTGTTAATAAAGTGTTTCATTGTAACAGGTGTGTCTGTGGAGAGGCATAAA
>XR_003404046.2
AATGCTATTTGTAGCTACATTAGTTTCTTAACTAATGACGCACactttaagtgaagtgaagtgatgttAGACACCAAACATGCCTTATCGAGTCCACTGGGTGTAAAGGGgaaactgtaattttttatatataattttttttttcttcaaactgttgctgtaatattttttcctcctttgGAAATCTCTGTGCTGTACAGAAGGGTAGTGTGAGATGTCGCGGTTGCCACAGTAACCACCGTGTGTACATTTCGGCTCCACTGAAATAATAATGGAGGCGTTTTCAGCTAACAGCTAATGCAACTCTTTGGCGAAATTTATCTAAACATATTCTGGTTGTTGCGTTAATATTTCTTAACCAATCTTATTACAATGCCACGTCCGAAGTATTTTACACCAAATGAAGTGTCCGTGCACAATACAGTAGGAGACCTGTGGGTATCGTATCTGGGTAAAGTTTATAACCTGACACCTTTACTTCAGGAGTACAAAGGCGATGTACTTCTGAAACCGATTATTGAAAGTGCAGGCAAGGACATCAGTCACTGGTTTGACCCCAAAACCAAAGATATTCTTACCCATGTTGACCCTTTAACCGGCTGTGTGAAGTATTACACACCCAGGGGGCGTTTTGTGCATGTGCCCCCCACGTGCCCGCGCACTGACTGGGCCAATGATTTTGGGAAGCCTTGGTGGAAAGATATGCGCTACGAAGTTGGCATTCTGACAGCCAAGGCCCGCTGGATCCGTATCATCAACACACTCACTGCCCAGGAACAGAGGTTGGAGGGTGAATCCAAGGTGCACTGATTAGATCAAAGATGTCAGTGCATAAAAGTCAACGATGGCTGTATGTGCAAAATGTATGTTCTGAGGAAACACTGAATGAGATTTTGCATCGTTACCTGCGCTACAACTCCCACGCAGCCAGCTACACCTGGAAGCACAACGG

Function

symbol description
cyb5d1 Predicted to enable metal ion binding activity. Is expressed in several structures, including Kupffer's vesicle; nervous system; presumptive telencephalon; pronephric duct; and pronephric mesoderm. Orthologous to human CYB5D1 (cytochrome b5 domain containing 1).

NR:

description
cytochrome b5 domain-containing protein 1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937153.2 True 1140 mRNA 0.42 4 16367967 16370957
XR_003404046.2 False 952 misc_RNA 0.44 5 16367956 16370684

Neighbor

gene id symbol gene type direction distance location
dnajc3b LOC108267637,LOC108434608,LOC107707053,LOC107683555,LOC107702051 coding upstream 1765 16356241 ~ 16366191 (+)
cldn15a cldn15,LOC103041259,LOC108434589 coding upstream 11993 16352761 ~ 16355963 (+)
fis1 fis1,LOC108434607 coding upstream 18555 16343344 ~ 16349401 (+)
mus81 mus81 coding upstream 57799 16299941 ~ 16310157 (+)
ovol1a LOC108267728,LOC108434587,LOC103038355 coding upstream 69235 16291819 ~ 16298721 (+)
chd3 chd3,LOC107738011 coding downstream 1040 16371997 ~ 16418930 (+)
si:dkey-19b23.8 LOC108268122,LOC108434612,LOC103044025,LOC107683552,LOC107707061,LOC105907161 coding downstream 89634 16460591 ~ 16465228 (+)
zpax4 LOC108268120 coding downstream 99303 16470260 ~ 16490483 (+)
shroom4 shroom4,LOC107588210,LOC104951873 coding downstream 234739 16605696 ~ 16648129 (+)
cskmt mettl12 coding downstream 282864 16653821 ~ 16655884 (+)
G65335 znf638 non-coding upstream 136841 16223418 ~ 16231115 (+)
G65199 NA non-coding upstream 304495 16062088 ~ 16063461 (+)
G65184 NA non-coding upstream 312811 16019857 ~ 16055145 (+)
G65170 NA non-coding upstream 366495 16001155 ~ 16001461 (+)
G65115 NA non-coding upstream 497185 15869198 ~ 15870771 (+)
G65382 NA non-coding downstream 21172 16392129 ~ 16392363 (+)
G65395 NA non-coding downstream 59504 16430461 ~ 16430686 (+)
G65495 NA non-coding downstream 60988 16431945 ~ 16442900 (+)
G65542 NA non-coding downstream 143680 16514637 ~ 16514841 (+)
G65580 NA non-coding downstream 198730 16569687 ~ 16577737 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 48790 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 327972 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 1709020 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2098616 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 2648502 13705417 ~ 13719454 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 964540 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 1238535 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1629201 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1742476 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1826355 18197312 ~ 18208564 (+)

Expression


Co-expression Network