gigyf1a (gigyf1)


Basic Information

Item Value
gene id gigyf1a
gene name gigyf1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12742257 ~ 12767904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937160.2
ATCTtcctaaaacacaaacaagagcAGCGAGTAGACAAGAGCTATCAACGCACAGCGACCGTCGGAGAgagcaaatacaaataatatagcTATTATACACAACCTAATGAGGATTATAGCGCGGTTTTAGAGCACGCCAGCAGCCGGACACCACAGTCTCATGCGCGAAAAACGAGAAGTCtcgaagtaaaaaaaaaaacaactttgcaTTTGGAGCTGCAGAAAACACGAGGTGGGAGCAGAGTCATCGGCGTGAGAGGGGTTGACTGGCGGGGCCTGGTCATACAGCGTTTCATCcagaggtggaggaggaggaacgagggagagaagagaagggaaGACCTGAGGAAGAGAGTCACGGTCACCTGCTTTAGACAGCTGTGTTGCCAGCTGATCAAATTTTGGTTTTTGTTCATAGCGTTGGGTTTCTGCAGCTCTACTTGGATTTTATCGTCAGTATCAAAGTATTTCTGTTATCACACAAGTAtagttagtgttttatttttttttcatcatttttccaACTCTGTTTTTTtggaatgtttttatttgtttaagttTTTGGGCCTGTGAGCAGGAGTTTTCACATCACATTTGAACAGATTTGTCCTTTTTCCTCCTGTACACGCCCAGTATAAGGCAGCTATTTCTCTATATTTTGGAAATCTTAAAATACACATACCTTCACACACAATCCACacgctgtctcacacacacgcacgcacaccaCTCAGCCTTCTCACCTAAGCCTGGTCCAGCCTAGTCTTGCCTGCTCCGCTCCCCCTGGACAGGATTCAGCTccgagaggaagagaggaataTGACAGCAGAGACACTCAATTTCGGCCCAGAATGGCTCCGTGCACTTtccagtggaggcagtgtgacttcccctcctccctctcccGCTATGCCAAAGTACAAGCTGGCCGAATATCGTTACGGCCGAGAGGAGATGTTAGCACTTTATGTCAAAGACAACAAGATCCCAGAGGACATGCAGGATAAGGTGTTTGCTGCTATTCTGCAGGATGAGCCTCAGCAACCTCTGGCACTGGTGCCTCTCACTGAGGAAGAACAGCGGAATTTTTCCATGTCTGTCAACAGTGTGGCTGTGCTGAGGCTCATGGGTAAAGGGGGTGGGGCCATTCCTGCTAGTATGGCCcgtggcagaggcagtgtgagaGGTGGCCGAGGCAGAGGCCGTGGAGAGAGTGGGTTCTACCAAAGAAGTACTGAAGATGGAGAGGTGGGCTTCAGCAGGAGCGTTAGAGAGATCCATCGTAGCCAGAGCTGGGATGACCGgggtgagAGGCGCTTTGAGAAGCCTCTGCGTAGGGAGGGGTTGCGTGTTGGCTTTGAGGATGTGGGCTCTGGGGGGAGGAAAGAGTTCATGCGTTCAGACAGTGATAACTGGCGCACACTGCGAGAGGAGCATGAGCAGGAGGAGGGTGGAGACACGGGAGGCAGCTGGAGACTGGCCGGCTCACGCCGAGATGATGGTGGTCCCCGTTCAGCAGGCTGGCGGGAGCATGGTGAGGTTCGCCGTAGAAAGTTTGAATTCCGGGatggagggagtgagggaggaaggaggagagcaggaagtgaaggagcagaggaagagagagacggaCTGCCAGAGTGGTGCACTGATGaagaagatggagagatggGAACCTTTGACTCTTCTGGAGCATTCATGCCCATCaagaagGGCTCTAAGGACCCTATTCCAGAAGAGGAGTTTGAGTTTCAGGGTCTAGAAGATGAGGACGAGTGTGGTACAGATGGAGAGAAGAAAGACAGCAATGCTGGAGACAAAGCCGAGAGAGACGAGACCGACTCTGCAGCTGTGTGCGAGGTAGAGGTGaaatctctccctccctcctctccttcctccaTGTCCCTCATTGCTCCTCAGGCCGAGCCCGTGCCCGCTGCTGCCCCCACTTGTCTGGAGGATCCTCAGCCTGCACCTGCCATGCCCAGCAAGATGCCAAGTGAAGTGTTACCAGAGCCTGTGTCTGAGCTGAGCCCTAGTGCCTCCTCCAGTCTGCCTTCATCccctccttcctcttcctctgctgCTACTGACCTCCCACCATCGGGGGGTGACCCCGAGGACGACGAGGGCATGAAGCACCTGCAGCAGGAGGCAGAGAAAATGGTTGCAGCTCTTCAGGACACATCTCTGGAGGAAGAGTGTTTCACTCAGACACTGCAGGAGAGCAGAAACACTGCAGCTGCCCTGCCTCTCTCCCACGACTCTGCCATGAAGTGGTTCTACAAAGACCCACAGGGAGAGATTCAGGGCCCCTTTAGCACAGTGGAGATGTGTGAGTGGTTCCAGGCAGGCTACTTCAGCATGTCTTTGCTAGTGAAGCGCGGCTGTGATGAGGGCTTCCAGCCTCTGGGAGATGTTATTAAGATGTGGGGGCGGGTGCCCTTTGCACCTGGCCCCTCCCCACCGCCACTGCTGTGTAATCTGGATCAGGACAGACTGAAGAAGCAGCAAGAGTTGGCTCTCTACCAGCAACTGCAACAGCATCAGCTTTTTCAACTCATTAACAGGTGCGGAGAGCAGGGTATGATGCCTTCGATGAGCAGATCAATGTCAGTGCCAGATACAGGGTCCATGTGGGACATGCATACCTCAGCCTCACAGCCGACAGGTGGTGAGGCCAGTCTATGGGACTTAACAATGAATTCTTCAACTCAGGGTCCAACTCTTGAACAGCTTCAGAAGCTCCAGGAGAGAAGAGAGGCTGAACTCAGGGCTAAGcgggaagaggaagagagaaaaagaagggatGAAAAGAGGAGACAGCAGCaggaagaacagaagaggagagaggaggaagagctCTTCAGGCGCAAACAGGAGCTGCTGATGAAGTTGCTGCAGCAGGCTCCACGTCAGGGGGCTGCCGGCACAGGCTCAGGCTGGAGCACAGGCTCAGTGCCTGGACTGGGGAAGCAGGGCAAGTCCATCAACACGCTGGAGATTCAACAGGACACTGAGAGACTCTACAAACAGCAGCAAAGAGCCCAACAGCAGAGATGGGCTACAGAGAGTCTGTGGGGTTCTGCTGGCATGGATGGGAAGGCACCTGGTGGCAGCAGTCCCTCAGGAGGCAGCATGGGGGTTTGGGACGAGGCCTTAAAGAACCAGAGCGCCCTCCGCAGCGGCATGGGCCTGAAGAACAGCCGCAGTAGCCCCTCACTCAgTGATCAGTACATGATGATGAATCGCCGCAAACGAACTGAGGATGAGGAGCGATTACTGAAGCTCTTGCAGGGGATGAAGGCTCAGGATGGCTTTACCACATGGTGCGAGCAGATGCTGCATGCCCTGAACACCTCTGCTAACAACTCCAACTCTTCCCTGGATGTGGCCACTATTGTGGCATATCTAAAGGAGGTGGAGTCGCCGTACGAGGTGCTGGACTTTATCCGCTCCTATTTGGGTGACACTGTGGAAGCCAAAGAGTTTGCCAAGCAGTTTCTGGAGCGCCGTGCCAAACAGAAAGCCAACCATCAGAGGCAGCAGCAGCTCTCTAAGGAGGTGGGTGGACTGACCATGAACAGCTTTCCTCTGCAGGATTCTATGAGAGGTATGAACCCTGCTGCTTTGCAGTCCATGTTTCaggcagtgcattctgggaaggGAGGAATGGGCTACGACCAGGCAGGGAAACTGAAGAAGAAACAGCCCATGATGATGCACTCGGATCCTAGCATCTTAGgttacTCATTCCACGGTGCAGGGGATCGGATGAGCCTGAGTGAGATGGAGATGGTGGAGGATTACTGAGTCCACAGCAATAGCTACCTGAGGCCTTTTTCTGCGGGTCCAACTAATCAGACTCCGCAAGTCCAATGTGCACTGCTGGGGATTGGGGGAGGGAGGGGT

Function

symbol description
gigyf1 Predicted to be involved in insulin-like growth factor receptor signaling pathway. Part of protein-containing complex.

NR:

description
PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937160.2 True 3912 mRNA 0.53 25 12742257 12767904

Neighbor

gene id symbol gene type direction distance location
epoa epo coding upstream 8779 12718253 ~ 12733478 (+)
LOC113540507 LOC108267598 coding upstream 25525 12712841 ~ 12716732 (+)
nlgn2a nlgn2,nlgn2a,LOC103033407,LOC107564776,LOC107753966,LOC107659731,LOC107750775,LOC107664280 coding upstream 71716 12508874 ~ 12670541 (+)
tifa tifa,LOC100304890 coding upstream 535382 12198342 ~ 12206875 (+)
tnfsf10l LOC108268320,LOC108410411,LOC103041464,LOC107691962,LOC107562848,LOC107742295,LOC107753950 coding upstream 619654 12099805 ~ 12122603 (+)
wrap53 wrap53 coding downstream 9273 12777177 ~ 12788225 (+)
efnb3b efnb3,efnb3b,LOC107597046,LOC106577756 coding downstream 28037 12795941 ~ 12861217 (+)
serpinh2 LOC108267141,LOC108412061 coding downstream 183165 12951069 ~ 12976437 (+)
dnah2 dnah2 coding downstream 212945 12980849 ~ 13115167 (+)
kdm6ba kdm6b,LOC106608825 coding downstream 348312 13116216 ~ 13198549 (+)
G63242 NA non-coding upstream 384009 12357832 ~ 12358248 (+)
G63241 NA non-coding upstream 384576 12355550 ~ 12357681 (+)
G63137 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC107572570,LOC107753961,LOC107659726,LOC107588125 non-coding upstream 492469 12248663 ~ 12249788 (+)
G63061 NA non-coding upstream 738034 12003990 ~ 12004223 (+)
G62983 NA non-coding upstream 804498 11934829 ~ 11937759 (+)
LOC113540557 NA non-coding downstream 681 12768585 ~ 12772822 (+)
G63547 NA non-coding downstream 33990 12801894 ~ 12834330 (+)
LOC117596991 NA non-coding downstream 154966 12922870 ~ 12926987 (+)
G63685 NA non-coding downstream 351564 13119468 ~ 13119677 (+)
G63696 NA non-coding downstream 367755 13135659 ~ 13135860 (+)
si:dkey-112a7.4 LOC108268066 other upstream 447124 12292491 ~ 12295133 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other upstream 1036921 11644901 ~ 11705336 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 1137027 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 2078846 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 2246787 10495398 ~ 10495470 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 438753 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 507558 13275462 ~ 13285834 (+)
G63903 NA other downstream 650473 13418377 ~ 13418696 (+)
LOC113539889 LOC108267838 other downstream 700648 13468552 ~ 13475037 (+)
cited1 cited1 other downstream 790719 13558623 ~ 13562266 (+)

Expression


Co-expression Network