ppp2r5b (ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189)


Basic Information

Item Value
gene id ppp2r5b
gene name ppp2r5b,LOC108267535,LOC107749805,LOC107668366,LOC107588189
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16776894 ~ 16804016 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937161.2
TGTTGATGACTGAGGAGAGATGGATGAAGGGTTTTAGATGAGGCTGCTAAGCTCCTCCGCGCGTGAACATGATAAGGACGAGGCTGCAGGGACATGACTGATCAACACTCCCTTCATCTGTACTGCATCCGATCCTTAATCtcaactgagagagagagagagagagagagagagagctaatgCGCTGTGTGTGAGGCCATGATGGATATGTGATGGAGCAATAAGAACAATGGCTCTGTGCGCATGCAGTGTGAGTCCCAAAATACCGCGGctataatgagagagagagagagagagagagagagggcttgGAGGAAGGAGACACAGACGACGACTAGGCTGTAGCCTGCGAGACAGATAGATGATCATGAGCTcggatttattttaaagaaactgGGTGGAAAAAAGACATAAATCGGAATCGGTGCTGGTTGGATTAGTGCGCGAACAAGCGTGggaaggatttaaaaaaaaaaaacaataaacaagaaacGTTTTGAGGTCGATAGCGCAAGCGCatGCTTCTATCAGGCTCGCACCCATGGATCAGCCCACCAAGCTGCCCCCGTCGAGTCCGTCCTCGCCCACGGCGGCCTTCTCTGTGCCCAGTGCTGAGAAGGTGGATGGCTTTCCACGCCGCTCCATGCGTAGGGCCCGCCAGAGAAGGTCACACAGCTCGTCGCAGTTCCGTTATCAGAGCTCGCAGGTGGAGCTCACACCTCTGCCTCCGCTCAAAGATGCCCCAGTGGCAGAGCTGCATGATCTGTTCTGTAAGAAGCTGCAGCAGTGCTGTGTGCTGTTTGACTTCCTGGACTGTGTGGCTGACCTGAAGGGGAAAGAGATCAAGCGTGCGGCACTAAATGAGCTGGTGGAGAGCGTGGCCACCAGCCGCGGTATTCTCATTGAGCCCCTCTATCCTGAGGCTATCAAGATGATCTCAGTGAACATCTTCCGTACTCTGCCGCCCAGTGAGAACCCAGAGTTTGATCCAGAGGAGGATGAACCCACACTGGAGGCCTCCTGGCCCCATTTACAGTTGGTCTATGAGTTCTTTTTACGCTTCTTGGAGAGTCCTGATTTCCAACCCTCCATGGCCAAACGTTATGTGGATCAGAAATTTGTTCTGCAGTTGCTGGAGCTGTTTGATAGTGAGGACCCCAGAGAGAGGGAATATCTGAAGACTATACTGCATCGTGTCTATGGCAAACTGCTCGGCCTCAGAGCGTACATCCGGAAACAGATCAACAACATCTTCCTCAGGTTCATTTATGAAACTGAACACTTCAATGGAGTGGCTGAACTGCTGGAGATTTTGGGCAGTATCATTAATGGCTTTGCTCTGCCTCTGAAGTCAGAGCACAAGCAGTTCCTGGTGAGGGTCCTAATCCCCTTACACACTGCCAAatctctgtccatctttcaTGCACAGCTTGCCTACTGTGTTGTGCAGTTTATGGAGAAAGACGCAACTGTTACAGAATATatcATCAGAGGGTTGCTGAAATACTGGCCTAAAACATGCACTCAGAAAGAGGTAATGTTCCTGGGGGAGATTGAGGAGATTCTGGATGTGATTGAGCCATCACAGTTTATCCGTGTGCAGGAGCCACTTTTTAAGCAGATTGCCAACTGCATCTCCAGCCCCCACTTCCAGgttgcAGAGCGGGCTCTGTATTTCTGGAATAATGAGTATATTCTGAGTCTGATCGAAGAGAACTGTCAGGTCATCCTGCCTCTGGTCTTTGGCACGCTTTACCGAGTCTCCAAAGAGCACTGGAACCAAACTATTGTGTCACTTATCTACAACGTCTTGAAGACCTTTATGGAGATGAATAGTAAGCTTTTTGATGACCTTACTGCCTCCTACAAAGTGGAGAAACAGAAGGAGCTGAAGAGGGAGAAGGAGCGTGCTGAGTTGTGGAAGGGGctggaggagcagcaggagcGGAGGCTGCAGAGTCTGGGGGAAGCAAGTCGCAACCAAAAGAACCTGCAAGAGCGAGAGAACCTGAGCAAGAACGAGCCGGAGAGCAGCGCTGCCAATGCcacctagaacacacacacacactcactcacacacacacacacacacatacacacagacaaatgcacAAGCCAATATGTACAAACATGGAgaacataataacacacactttgttttACTGACAGTTTTTACTCTGGAACTTACCATCACCtcttaaaacatacacacatacacacacacatacagatacacacacaaatcatacaGACAACATTGCTGGAACAATCAGAGAGAACAAACCAACAGCCAGTTGTCTATATGTAGATATACAAgccactctcacactcacacacatagaAGTGAGATGTAAATGATGCAGAAAGAAAAGATGAGTACCTCTCACTCTTCATGCCTTTTATTCATTTCCGCTGTCTCGATACATATCGTACACGCTTCTTACTCAATCTATCGCTTTCACTGCTTcccttctgtttctctcttcctctcattGACACTAAAtgtatacatgcatacacacactgatacctACACACAATGAAGACACAAGCAGAACAAACAAGTACACACAATACATGCACGGACACATGAATGGATTGGAGTCACATAAACAggcacgacacacacacacacacacacacacacacacacacactgtcatcaGTTAAACTCTGGAACGGGTCTAATCTCGCTCGGGACCTCTCTCAGTCCCAGTGTCATGTCCTCCATTCGACTTACACACTCTCCCAAAAGATGAAGCAACATgctgaaaatgatgatgattatgaagAATTATGATGAAGATAACTCTGTAAAAGTAATGGTTATAATGTTCTTATTACAGCTTATTCTATAAGTAACACTTCTATTGCTATTTCAActgatgtttttatatatacatatatataaatatatatataaatataatatctatGTCCGATTATAGTGTTGGTGGGGGTATTCTAGTGTAGCACCTCTTAAACATGACAAAAGTATGCTGCTAGACTAAACTTGTTCTGATGTGAAGACAAAACATTACACTAGTCCGTTCTTCTTCTGgggtttctttaaaaaaaaaaaaaaacatccaaaatgtATTACTTTAGCAATATTCTCATCTACTTTGAATGTGTGTCAGCAGTTTTCTTTGGAAACCATACCGCCTACTTCAGTACACATAGTTCTAAAGATGGGGTTGATattttgttgattgttttaatttttatttttgtataacagtttGGCTGttgatatttattaatatttatttcatattgtgACCATCTTGGAGCAAAAACTTGATGAACAAGACTGGAAGTGACCGTATGCTTGGGCGTACTTAAGTCTGGGATGGATTGTCAATGTTTTGATGTTGGATGTTGGTTCTGTACCAGCATATTCCATGACTTTCCTCTGTtttcctctgaaaaaaaaaaaaaaaaaacaagaaaggtGTAGAAAAACCATCTCATTTTGTTATTGATTTTGTAAAAGGTGCAGTTCATTTCCCCATACTTCCTCCATTGAGAAGGGTTAGATGTGAGAGAGTCAGTAAGGCACTCAGTAGAGTAGAGAGAAGGCAATACATGAACTGGAGCTGTAAGCATAAGTAGCACCACTTCAACTAGAATTGCACTGTCCTcttgatgttttgtgtttaaatatagCAATGTATTTTTGGGGGACCAACGGCTTTGGGAtatgaatgtataaaaatatgggatataaacatgaaaatgtctGTTGAAGTGCTTCAAATGGAGAAATGAGTGTTATATGTCGTTATTCGCgaagcacacacaaaacagagaagaaaaaaaatggctacCTCAGAT

Function

symbol description
ppp2r5b Predicted to enable protein phosphatase regulator activity. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human PPP2R5B (protein phosphatase 2 regulatory subunit B'beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B'

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937161.2 True 3837 mRNA 0.44 14 16776894 16804016

Neighbor

gene id symbol gene type direction distance location
batf2 batf2 coding upstream 65 16772399 ~ 16776829 (+)
sb:cb1058 LOC108267120 coding upstream 21487 16752137 ~ 16755407 (+)
b3gat3 b3gat3,LOC107750592,LOC107691906 coding upstream 26770 16746698 ~ 16750124 (+)
naa40 naa40,LOC107749810,LOC107691908,LOC107750594,LOC107668433 coding upstream 31537 16736067 ~ 16745357 (+)
mark2b mark2 coding upstream 61797 16675435 ~ 16715097 (+)
zgc:101765 LOC108267536,LOC108434636 coding downstream 7384 16811400 ~ 16818534 (+)
exoc6b exoc6b coding downstream 21192 16825208 ~ 16920946 (+)
LOC113540460 cyp26b1,LOC108267534,LOC108434641,LOC103033177,LOC107588193,LOC107750587 coding downstream 135445 16939461 ~ 16960809 (+)
LOC113539921 NA coding downstream 381005 17185021 ~ 17189452 (+)
si:ch73-211e3.1 mamld1 coding downstream 404487 17208503 ~ 17275182 (+)
G65663 NA non-coding upstream 6051 16770605 ~ 16770843 (+)
LOC113540742 NA non-coding upstream 15019 16761804 ~ 16761875 (+)
LOC113540744 NA non-coding upstream 15247 16761572 ~ 16761647 (+)
LOC113540743 NA non-coding upstream 15556 16761266 ~ 16761338 (+)
LOC113540745 NA non-coding upstream 15787 16760981 ~ 16761107 (+)
G65938 NA non-coding downstream 553322 17357338 ~ 17372139 (+)
G65939 NA non-coding downstream 554470 17358486 ~ 17359569 (+)
G65927 NA non-coding downstream 598543 17402559 ~ 17403879 (+)
G65933 NA non-coding downstream 606978 17410994 ~ 17502645 (+)
G65934 NA non-coding downstream 627061 17431077 ~ 17440372 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other upstream 405937 16367956 ~ 16370957 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other upstream 457728 16310213 ~ 16319166 (+)
LOC113540079 sh3tc1 other upstream 736910 16023194 ~ 16039984 (+)
zgc:194930 LOC108268002 other upstream 2117958 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 2507554 14255744 ~ 14269340 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 531481 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 805476 17609492 ~ 17620079 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other downstream 1196142 18000158 ~ 18010962 (+)
frem1a frem1 other downstream 1309417 18113433 ~ 18143631 (+)
G66492 LOC108267609,LOC108437090 other downstream 1393296 18197312 ~ 18208564 (+)

Expression


Co-expression Network