pcyt1aa (pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373)


Basic Information

Item Value
gene id pcyt1aa
gene name pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27547752 ~ 27555987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937162.2
cacagatgtaattaaaaaaatgcagaactcGTTCAGGTTGAATCCCAAATACATTCACGTTCAAAATCGAGTTCACTACTTAGCACGTAGGGAATATTACGATTCAACGTATACGAGTTGTATGTTCTCGAGTTTAgctaaatataattaatattagcGAAGTATTTTAGAAAGCGACTCCTTTTCCTCGAGCCCTCGCTTCCTAGTACAGGTCCTGTAGCTTTGAAGCACCCAGGTGTAGTGAGGAAGTGAGAATTTGGGACGCGGCCCGAGTCCTGCGCTGTTGGCACTTAGCTGTCAAGCAGGGTGAAGTCGTGCGCTCGCTAGCGTCAAGTGTCTCTATTAAAAGCGCATTTATTCATGATAATTGTGCAGAAGATCTAACTAAGTGCACATTTAAACGCCAGGACGAGGGATTTCGAGGACCTGCAGGTGGTGGGAATGGACGCTCACGCTTCATCACGCGCTCTCTCccggaagaggaggagagatgaCTCGAATGGAGAGACGGAGGAAGGAGACACGACGGGCAAATTTAAACGCCACACCGTGGCTCTAAGAGATCCGGCTCCGTACGCTGATCAGCTCGATTCGTTGGAGGATCGGCCATATAAACGCGTCAGCATGGAGGAGGCTCAAAGGGGAACACCACcTGACAGGCCGGTGAGGGTGTACGCAGACGGCATCTTCGACATGTTCCATTCAGGACACGCCCGCGCCCTCATGCAGGCCAAAGGCCTCttccccaacacacacctcaTCGTTGGAGtgtgcagtgacgacctcacacacaaactcaagGGCTTCACCGTGATGAACGAGGAGGAGCGCTACGACGCCGTCACACACTGCCGCTACGTGGACGAGGTGGTGCGCAACGCGCCCTGGACCCTCACGCCCGACTTCCTCACCAAACACCGGATTGACTTTGTCGCTCATGATGATATCCCGTACTCCTCAGCGGGGAGTGATGACGTGTACAAACACATCAAAGAAGCAGGTATGTTTGCTCCGACTCAGCGCACTGAGGGCATCTCTACCTCTGACATCATCACCCGCATCGTCCGCGACTACGACGTGTACGTGAGGAGAAACCTGCAGCGCGGCTACACGGCCAAAGAGCTCAACGTCAGCTTCATCAACGAGAAGAAGTACCACCTGCAGGAGCGTGTGGATAAGGTGAAGCAGAAGGTGCGAGATGTGGAGGAGAAGAGCAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAGTGGGAGGAGAAATCCCGGGAGTTCATCGGAAACTTCCTGCAGATGTTCGGGCCCGAGGGAGCGCTGaagcacATGCTGAAGGAGGGGAAAGGCCGCATGCTGCAGGCCATCAGTCCTCGTCAGAGCCCGAGCAGCAGCCCGACCCGTGAGCGCTCGCCCTCGCCCACCTTCCGCCTCCCGTTCTTCACCAAGACCTCACCGCCCGCCTCGCCCAGCGCCAAGCGCCCACGCCATGACATCATCACCCATGGCCAGAACATCAGCGAGGACGAGGACGACGAAGATTAGGAAGGAGGACGTCAGACACTGGGTGTGGAAATGCTGACACGGAAACACGTCGCTCCTCTACATCCTCCATCAAATATGGAATGAAGAAcggatatttttttaaacatgttgcagctatggctgtgtgtgtagtAACCATTAGCATACAggaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatgttacAGCATGCCAGTGTTCTGGCTCTGTTTCCTGTAAGATCTGAGTTTTGGGGGAAGAGCCGCTGTTTTTACTCTAGAATCGTCAGTCAGTGTGCATGGGAtcgttttatttttattttaaaaacaacctttttttgttctttatacAGTCTAACAAGACACTCAGAGAGTCTGTACATTTTTTAGTTACATCTGCAAAGCTCATCGTACAGTTCTTTATCTTAAAAACATGTCAAGCGTGCGCTAACTGGTCAAGAGACCTCgtctgttgccatggttacatcTCGGACCGTGTTATTTCTCTCTGTGCACTTCAAGTATAGGCCAAGGGCTAAAAAAACATAGTATTCATGGTTATGTAGTATGAATACATAGTATTCATTCAATTCTAGCACTATTACCTcgataaaatagaaaatagcgCACACCTTTACACCTGTAAACGAGTATTTTCCAGATTTTCAGAGAAGTCGTATCTGACAttttctggatgttttttttttttttttccctaacagGTGTTGCGAGGTGTATTggaattttatttagtatttttttttgtaaagtctATAGCGATAACattaaaccaaacaaacacTATGTTAGACTACGCCAGTAGGAGGCGCTGAACTGCACCCGTTATGctctagctagctgactagcctTGTAGCAGAaagttagctacattagccttgacTGCATTTAGGGTGCACAGGATATTTAACTTTACTActcatttttttaagaaatcttGGACATCTTGTgatagcttgttttttttttttcttttaaattaagcATCAAGTCCTGAAAAAAGCGTTCAGGAGCATCAAAGCAATCCCATAAACCTGTTCACCAAACGAGTGTTTGAAAAACGTGATAGAGATGACGAGGAAGACATTTTGCAATACAGTAAATCTTTGTGAAAATATCATCCAGCTTGATGaaccattattattatggaaCTTTAATAATTGGCACATACGCAATCTGCGTTTGCGTTTCTGACTCGACGCTTGTAACGACCTCAGCAGGTTTTATTGCACTGTTCGAGCTCTGCTGATctgatgtgtgtttatatatttctgtaaagctgctttgtgacgctGTCccgttaaaagcgctatacatatgaaattgaattgaacggAGTATGTGTAAAATGTAGGATTGTGTACAGCTACTGTAATAACCTCACTAATTAATTAGTCTCTCACTGCACAAAATGGACTTTAATTGTAAGATAGTTTTATCTTTTCTTCTGTCTGGTGTCTGCTcggttttttatttatatcagaaCACAGAAACTTATTAAATCAGTATAATATGAACAAAA
>XM_034303959.1
gcacagatgtaattaaaaaaatgcagaactcGTTCAGGTTGAATCCCAAATACATTCACGTTCAAAATCGAGTTCACTACTTAGCACGTAGGGAATATTACGATTCAACGTATACGAGTTGTATGTTCTCGAGTTTAgctaaatataattaatattagcGAAGTATTTTAGAAAGCGACTCCTTTTCCTCGAGCCCTCGCTTCCTAGTACAGGTCCTGTAGCTTTGAAGCACCCAGGTGTAGTGAGGAAGTGAGAATTTGGGACGCGGCCCGAGTCCTGCGCTGTTGGCACTTAGCTGTCAAGCAGGGTGAAGTCGTGCGCTCGCTAGCGTCAAGTGTCTCTATTAAAAGCGCATTTATTCATGATAATTGTGCAGAAGATCTAACTAAGTGCACATTTAAACGCCAGGACGAGGCAGGATTTCGAGGACCTGCAGGTGGTGGGAATGGACGCTCACGCTTCATCACGCGCTCTCTCccggaagaggaggagagatgaCTCGAATGGAGAGACGGAGGAAGGAGACACGACGGGCAAATTTAAACGCCACACCGTGGCTCTAAGAGATCCGGCTCCGTACGCTGATCAGCTCGATTCGTTGGAGGATCGGCCATATAAACGCGTCAGCATGGAGGAGGCTCAAAGGGGAACACCACcTGACAGGCCGGTGAGGGTGTACGCAGACGGCATCTTCGACATGTTCCATTCAGGACACGCCCGCGCCCTCATGCAGGCCAAAGGCCTCttccccaacacacacctcaTCGTTGGAGtgtgcagtgacgacctcacacacaaactcaagGGCTTCACCGTGATGAACGAGGAGGAGCGCTACGACGCCGTCACACACTGCCGCTACGTGGACGAGGTGGTGCGCAACGCGCCCTGGACCCTCACGCCCGACTTCCTCACCAAACACCGGATTGACTTTGTCGCTCATGATGATATCCCGTACTCCTCAGCGGGGAGTGATGACGTGTACAAACACATCAAAGAAGCAGGTATGTTTGCTCCGACTCAGCGCACTGAGGGCATCTCTACCTCTGACATCATCACCCGCATCGTCCGCGACTACGACGTGTACGTGAGGAGAAACCTGCAGCGCGGCTACACGGCCAAAGAGCTCAACGTCAGCTTCATCAACGAGAAGAAGTACCACCTGCAGGAGCGTGTGGATAAGGTGAAGCAGAAGGTGCGAGATGTGGAGGAGAAGAGCAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAGTGGGAGGAGAAATCCCGGGAGTTCATCGGAAACTTCCTGCAGATGTTCGGGCCCGAGGGAGCGCTGaagcacATGCTGAAGGAGGGGAAAGGCCGCATGCTGCAGGCCATCAGTCCTCGTCAGAGCCCGAGCAGCAGCCCGACCCGTGAGCGCTCGCCCTCGCCCACCTTCCGCCTCCCGTTCTTCACCAAGACCTCACCGCCCGCCTCGCCCAGCGCCAAGCGCCCACGCCATGACATCATCACCCATGGCCAGAACATCAGCGAGGACGAGGACGACGAAGATTAGGAAGGAGGACGTCAGACACTGGGTGTGGAAATGCTGACACGGAAACACGTCGCTCCTCTACATCCTCCATCAAATATGGAATGAAGAAcggatatttttttaaacatgttgcagctatggctgtgtgtgtagtAACCATTAGCATACAggaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatgttacAGCATGCCAGTGTTCTGGCTCTGTTTCCTGTAAGATCTGAGTTTTGGGGGAAGAGCCGCTGTTTTTACTCTAGAATCGTCAGTCAGTGTGCATGGGAtcgttttatttttattttaaaaacaacctttttttgttctttatacAGTCTAACAAGACACTCAGAGAGTCTGTACATTTTTTAGTTACATCTGCAAAGCTCATCGTACAGTTCTTTATCTTAAAAACATGTCAAGCGTGCGCTAACTGGTCAAGAGACCTCgtctgttgccatggttacatcTCGGACCGTGTTATTTCTCTCTGTGCACTTCAAGTATAGGCCAAGGGCTAAAAAAACATAGTATTCATGGTTATGTAGTATGAATACATAGTATTCATTCAATTCTAGCACTATTACCTcgataaaatagaaaatagcgCACACCTTTACACCTGTAAACGAGTATTTTCCAGATTTTCAGAGAAGTCGTATCTGACAttttctggatgttttttttttttttttccctaacagGTGTTGCGAGGTGTATTggaattttatttagtatttttttttgtaaagtctATAGCGATAACattaaaccaaacaaacacTATGTTAGACTACGCCAGTAGGAGGCGCTGAACTGCACCCGTTATGctctagctagctgactagcctTGTAGCAGAaagttagctacattagccttgacTGCATTTAGGGTGCACAGGATATTTAACTTTACTActcatttttttaagaaatcttGGACATCTTGTgatagcttgttttttttttttcttttaaattaagcATCAAGTCCTGAAAAAAGCGTTCAGGAGCATCAAAGCAATCCCATAAACCTGTTCACCAAACGAGTGTTTGAAAAACGTGATAGAGATGACGAGGAAGACATTTTGCAATACAGTAAATCTTTGTGAAAATATCATCCAGCTTGATGaaccattattattatggaaCTTTAATAATTGGCACATACGCAATCTGCGTTTGCGTTTCTGACTCGACGCTTGTAACGACCTCAGCAGGTTTTATTGCACTGTTCGAGCTCTGCTGATctgatgtgtgtttatatatttctgtaaagctgctttgtgacgctGTCccgttaaaagcgctatacatatgaaattgaattgaacggAGTATGTGTAAAATGTAGGATTGTGTACAGCTACTGTAATAACCTCACTAATTAATTAGTCTCTCACTGCACAAAATGGACTTTAATTGTAAGATAGTTTTATCTTTTCTTCTGTCTGGTGTCTGCTcggttttttatttatatcagaaCACAGAAACTTATTAAATCAGTATAATATGAACAAAA
>XR_004578066.1
cacagatgtaattaaaaaaatgcagaactcGTTCAGGTTGAATCCCAAATACATTCACGTTCAAAATCGAGTTCACTACTTAGCACGTAGGGAATATTACGATTCAACGTATACGAGTTGTATGTTCTCGAGTTTAgctaaatataattaatattagcGAAGTATTTTAGAAAGCGACTCCTTTTCCTCGAGCCCTCGCTTCCTAGTACAGGTCCTGTAGCTTTGAAGCACCCAGGTGTAGTGAGGAAGTGAGAATTTGGGACGCGGCCCGAGTCCTGCGCTGTTGGCACTTAGCTGTCAAGCAGGGTGAAGTCGTGCGCTCGCTAGCGTCAAGTGTCTCTATTAAAAGCGCATTTATTCATGATAATTGTGCAGAAGATCTAACTAAGTGCACATTTAAACGCCAGGACGAGGGATTTCGAGGACCTGCAGGTGGTGGGAATGGACGCTCACGCTTCATCACGCGCTCTCTCccggaagaggaggagagatgaCTCGAATGGAGAGACGGAGGAAGGAGACACGACGGGCAAATTTAAACGCCACACCGTGGCTCTAAGAGATCCGGCTCCGTACGCTGATCAGCTCGATTCGTTGGAGGATCGGCCATATAAACGCGTCAGCATGGAGGAGGCTCAAAGGGGAACACCACcTGACAGGCCGGTGAGGGTGTACGCAGACGGCATCTTCGACATGTTCCATTCAGGACACGCCCGCGCCCTCATGCAGGCCAAAGGCCTCttccccaacacacacctcaTCGTTGGAGtgtgcagtgacgacctcacacacaaactcaagGGCTTCACCGTGATGAACGAGGAGGAGCGCTACGACGCCGTCACACACTGCCGCTACGTGGACGAGGTGGTGCGCAACGCGCCCTGGACCCTCACGCCCGACTTCCTCACCAAACACCGGATTGACTTTGTCGCTCATGATGATATCCCGTACTCCTCAGCGGGGAGTGATGACGTGTACAAACACATCAAAGAAGCAGGTATGTTTGCTCCGACTCAGCGCACTGAGGGCATCTCTACCTCTGACATCATCACCCGCATCGTCCGCGACTACGACGTGTACGTGAGGAGAAACCTGCAGCGCGGCTACACGGCCAAAGAGCTCAACGTCAGCTTCATCAACGAGAAGAAGTACCACCTGCAGGAGCGTGTGGATAAGGTGAAGCAGAAGGTGCGAGATGTGGAGGAGAAGAGCAAAGAGTTTGTGCAGAAGGTGGAGGAGAAGAGCATCGACCTGATCCAGAAGTGGGAGGAGAAATCCCGGGAGTTCATCGGAAACTTCCTGCAGATGTTCGGGCCCGAGGGAGCGCTGaagcacATGCTGAAGGAGGGGAAAGGCCGCATGCTGCAGGCCATCAGTCCTCGTCAGAGCCCGAGCAGCAGCCCGACCCGTGAGCGCTCGCCCTCGCCCACCTTCCGCCTCCCGTTCTTCACCAAGACCTCACCGCCCGCCTCGCCCAGCGCCAAGCGCCCACGCCATGACATCATCACCCATGGCCAGAACATCAGCGAGGACGAGGACGACGAAGATTAGGAAGGAGGACGTCAGACACTGGGTGTGGAAATGCTGACACGGAAACACGTCGCTCCTCTACATCCTCCATCAAATATGGAATGAAGAAcggatatttttttaaacatgttgcagctatggctgtgtgtgtagtAACCATTAGCATACAggaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggtccA

Function

symbol description
pcyt1a Enables choline-phosphate cytidylyltransferase activity and identical protein binding activity. Involved in CDP-choline pathway. Located in endoplasmic reticulum and nucleus. Implicated in spondylometaphyseal dysplasia with cone-rod dystrophy.

NR:

description
PREDICTED: choline-phosphate cytidylyltransferase A

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937162.2 False 3082 mRNA 0.46 9 27547823 27555986
XM_034303959.1 True 3086 mRNA 0.46 9 27547823 27555987
XR_004578066.1 False 1773 misc_RNA 0.54 10 27547752 27555986

Neighbor

gene id symbol gene type direction distance location
anxa13l anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547 coding downstream 16662 27521690 ~ 27531090 (-)
acbd5b NA coding downstream 52825 27484777 ~ 27494927 (-)
slc35a3b LOC108267645 coding downstream 92039 27447255 ~ 27455713 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding downstream 106258 27433692 ~ 27441494 (-)
insl5b LOC108268041 coding downstream 133188 27413456 ~ 27414564 (-)
gpr158b LOC108268005 coding upstream 29587 27585574 ~ 27619191 (-)
trnat-ugu_7 NA coding upstream 65069 27621056 ~ 27621128 (-)
trnat-ugu_9 NA coding upstream 68749 27624736 ~ 27624808 (-)
dpp6b LOC108267703,LOC108430761 coding upstream 148294 27704281 ~ 27839097 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding upstream 500725 28056712 ~ 28064529 (-)
G72094 NA non-coding downstream 102638 27444743 ~ 27445114 (-)
G72074 NA non-coding downstream 140933 27403137 ~ 27406819 (-)
G72073 NA non-coding downstream 145117 27401670 ~ 27402635 (-)
G71955 NA non-coding downstream 261054 27286239 ~ 27286698 (-)
G71952 NA non-coding downstream 264095 27281049 ~ 27283657 (-)
G72517 NA non-coding upstream 13257 27569244 ~ 27970795 (-)
G72607 NA non-coding upstream 356883 27912870 ~ 27958488 (-)
LOC117597146 NA non-coding upstream 418483 27974470 ~ 27985856 (-)
G72604 NA non-coding upstream 455697 28011684 ~ 28012804 (-)
G72652 NA non-coding upstream 511595 28067582 ~ 28068084 (-)
tsen15 tsen15 other downstream 63919 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 115074 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 151529 27396151 ~ 27396223 (-)
trnat-ugu_3 NA other downstream 152323 27395357 ~ 27395429 (-)
G71909 LOC108267490 other downstream 343566 27203783 ~ 27204186 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other upstream 460077 28016064 ~ 28041785 (-)
LOC117597043 NA other upstream 642004 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 680199 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 680737 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 1092337 28648324 ~ 28652425 (-)

Expression


Co-expression Network