sox32 (LOC108267240,LOC100698545)


Basic Information

Item Value
gene id sox32
gene name LOC108267240,LOC100698545
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21399555 ~ 21401268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937164.2
ACTGGAACTCTGGGATTGACATGAGCAGGCTGAAGAAGTCTTAAAGACAGTCATGTACTTTGACAGAATGTTTCCCTCTCTGGACATGGGAGCCATGCAAGAAATGCTGGAAAGCGAGCAGCGCTGTTACGCACCGTCTGAACAGCCCGAGGTTCCTGTGTCAGGGCCTTCCAGCCCGGCATCGGCTGAGTCTGAGCTCAGCTGCTCCAGCCCGGAAACCAAACCGACACCGGAAGCTCGAGTGAGGAGACCTCTGAACGCCTTCATCATTTGGACGAAAGAGGAGCGCAGACGTCTTGCACAGCTCAACCCAGATCTGGAAAACACCGACCTGAGTAAAATACTTGGTAAGACCTGGAAAGCCATGTCTCTGGCAGAGAAACGTCCGTACATGCAGGAAGCAGAAAGACTGAGGGTCCAACACACTATTGACCACCCCAACTACAAATACCGTCCCCGTCGGCGCAAGACCAACAAGCGTGCTGCCAAGATGCCCTCACACGAAACCAATGTCTCACCCAACTTCCACCTCAGCTATATGCTCCAGAACCAAGCTCTTCAatatccatacacacactcacacacactccctaactcatacacacaccctcatgGTCCCAGTTTCCAGCATCATCCTGTCCCTTCACAGAATGGAGCAACATTTACAAATGGAGGGTTAACGTTCCCAGATGGAGCAGTGCTCTTGAACTCGTCTTTAGCATGCCCGCAGCAGTCTGTGTACTCAGCAGAACCCCAGCTATACTACAGTTCCCAGCATGCAGTGCAGCAGAGAGGAGAGCAGTGGAATTGGCGGGGGGAAGAAGTGTGTGCTTGTGTCCTGTGTTCAGGTGGACCGTCGTTAGAATTTTACCTGGAACAGGTACGAGTGGACATGCTGGACCAGCTGGATCGCAGTGAGTTTGACCAATATCTCAATCCTGTCCAGCCTAAAGACCAACACTTCCAATGAACATCACAAAGTGACCACACTTCCGTCTTATAACCCAACAGACTCTGCAGTAGGGCAAACCACAGAGTGGCCTGTTTGGTACAATATATTTTCTGTTACTGTTGCTTctaaaaagagatttttttaaaaagatgtgattgtctatataaatatttgtatttatttatgatgtttattGGTGCCTGAATACAGAATAACCTCTCTCAGGATTAAATCTCACTGTCAGTGTGGACTCCAGAAAATATTCTAAGATGTGTCATCTGCCTCACTTTAAATTGTTTAATCGTTGCTGCTTTTTTGTCTCAGAGATTTATAAGATCAGCATATTTCAATGTACTTTTGGaatgtgtatttattacttGTTGACTTGTGGGAAAGTCCAGTTACAgattctataaataaaacatttaaatataa

Function

NR:

description
transcription factor Sox-17-alpha-A-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007493 endodermal cell fate determination biological_process
GO:0007498 mesoderm development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001885 endothelial cell development biological_process
GO:0061035 regulation of cartilage development biological_process
GO:0001889 liver development biological_process
GO:0003262 endocardial progenitor cell migration to the midline involved in heart field formation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937164.2 True 1387 mRNA 0.46 2 21399555 21401268

Neighbor

gene id symbol gene type direction distance location
sox17 LOC108267806 coding downstream 19596 21376395 ~ 21379959 (-)
LOC113540120 LOC108267808 coding downstream 48744 21337108 ~ 21350811 (-)
LOC113540421 LOC108267573 coding downstream 150918 21235253 ~ 21248637 (-)
sdcbp sdcbp,LOC107660837,LOC107730132 coding downstream 165870 21227985 ~ 21233685 (-)
unm_hu7910 asph,unm_hu7910,LOC107730121,LOC107698672,LOC108436147 coding downstream 173571 21195948 ~ 21225984 (-)
mrpl15 mrpl15 coding upstream 12593 21413861 ~ 21417828 (-)
trnaa-ugc NA coding upstream 16900 21418168 ~ 21418239 (-)
LOC113540027 rgs20 coding upstream 25917 21427185 ~ 21430580 (-)
fastkd3 fastkd3 coding upstream 79347 21480615 ~ 21485813 (-)
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding upstream 86919 21488187 ~ 21492336 (-)
G68466 plag1 non-coding downstream 78409 21320818 ~ 21321146 (-)
G68186 NA non-coding downstream 595451 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 763356 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 763762 20635532 ~ 20635793 (-)
G68106 NA non-coding downstream 767845 20630166 ~ 20631710 (-)
G68495 NA non-coding upstream 5843 21407111 ~ 21408207 (-)
G68519 NA non-coding upstream 70364 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 71551 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 73319 21474587 ~ 21475776 (-)
G68585 NA non-coding upstream 95664 21496932 ~ 21501433 (-)
LOC113539989 LOC108436138 other downstream 28545 21354619 ~ 21371010 (-)
G68462 NA other downstream 70305 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 85658 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 574035 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1433704 19962582 ~ 19965851 (-)
G68760 NA other upstream 533258 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1228347 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1890780 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1929748 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 2078697 23479965 ~ 23483850 (-)

Expression


Co-expression Network