coro1b (LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435)


Basic Information

Item Value
gene id coro1b
gene name LOC108267697,LOC108440123,LOC107679286,LOC107597893,LOC107710519,LOC107683505,LOC107558435
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20333678 ~ 20345681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937181.2
ATAATCTGTCAGTAAGATAAATAACCATGTCTTTTATTTGAGAAGCACACGACAAACGAACGACGTGTACACGTTTCTTGTATTTCAGTGTAAACACTGCGCCCATTGTGAATACAGAAACCATGACGGGCTTGAACAGGAAATAGGCTGTTTGACACAAAGGCTGTGCGCACTCCCCTACTATGTAGTACGCATCCTGTGCAGTCACTACCGTGTGTCCATACTATACTAGGTAGCAGGGCAGTGCGCGCGCTGGGACGCAGCCAATTCCCTCCCGCTGGCTGCGATTAGACTGCTGTAGTCATGTCCTTCAGGAGAGGTGTGGTTAGGCAAAGTAAGTTCCGACATGTATTCGCCCAGGCGTGGAAGGCGGAGCAGTGTCTGGATGACGTCAGAGTTTCCCGTGTGACATGGGATGGGCAACTGTGTGCAGCCAATCCAAAGTTCATTGCTGTTATTACTGAGGCTGGAGGGGGCGGAGCCTTTCTTGTATTACCACTCACAAAGACCGGTAGAGTGGACCAGTCCACTCCCACTGTGTGCGGCCATGCTGCTCCTGTGCTTGATATCCAGTGGTGTCCACATGATGACAACGTAATTGCCAGTGCTTCAGAGGACTGCACAGTAAAGATATGGCACATTCCTGATGGCGGGCTCACAGCGCCAATGActgaggctacagtaactctagAGGGCCACAGTAAAAGAGTGGGCATTCTGGCCTGGCACCCTACTGCACTTAACATCTTACTAACTGCAGGTTGTGATAATGTATTGTGCATATGGGATGTTGGCACGGGAGAGCTGGTGTACGAGCTGAGTGATGCTCATCCGGATCAGATCTACAGTGTGAGCTGGAACAGAGAGGGCAGTGTGATCTGTACCACCTGCAAAGACAAAGCCCTGCGTGTTATTGACCCTCGACGGGGAACTATCCTTAAGGTGCGGGAAAAGGCCCATGAGGGCACTAGGCCAATGAGAGGTGTCTTCCTGACTGATGGAAAAATCCTGACAACTGGCTTTAGCCGCATGAGTGAGAGACAGCTGGCCCTATGGGATACGAAAGATCTCTCAGAGCCAATGGCTGTTCAGGAAATGGACACCAGTAATGGAGTTCTCCTTCCTTTCTATGACCCAGATACAAACATGGTCTATCTGTGTGGAAAGGGTGACTGCACTATTCGCTACTTTGAGGTAACCAATGAGTCTCCTTACATCCACTTCCTCAGTCTCTACAGTAGCAAGGAGCCTCAGAGAGGAGCTGGTTTCCTCAGCAAGAGAGGAGTGGATGTTAACAAGTGTGAGATCGCCAGGTTCTATAAACTCCATGAGAGGAAGGTTGAGCCCATTTCCATGACTGTGCCAAGAAAGTCAGACCTGTTCCAGGGGGACCTGTATCCAGACACAGCAGGGTTAGAACCCTCTCTACTGGCTGAAGACTGGATTGCAGGGCAGGATGCTCCTCCAATCTTAGTCTCTATGAGTGGAGGCTATAACACTCCTGCCTCCAAATATAACACACTCCGCGGAAGACCTAAATTACTACCTCAGAGCAACTCAGCTTCTAGCATCAATACCAGCACTACAGCTCTCAGCACAAACACTGctgccagacagacagacagtgagaggacACAGCAAGTGCAAGTTAGGAAAGAGGTTGaaggagggacagagagaacaAGGAAAGAGGATGACCAGCTGGCTGATATTTTGACAGAAGTTCGCGCCCTTCGTGCTCTTGTGTTAGCTCAGGGTCACAGGATCGACATGCTTGAGAGGCAGCTAGCACGATTTGACGATGGAGAAGTGTGACCTACGGAGAACCATAGCCTTAACCTGAACTACAATAGCTTTACATTACAGTGAAGGGTCCTGGGAAATGCAGTTCAATACCTTAAgtgtaacattataaacattgaGCATTAACATTTTATGCTTGTTTTAGATAGGAGATGTGGGTTAATTATGAGTCGATGAAAGGTTAtacaaaaaaagaggaaatttaATATCGCTTTCAGATCAGGTACTGACTACTGCTGCTAATCGGAAACTGATTTAGGAAGGATTGCAGTATGGGctgaagtacttttttttttggtggcaCTAGCATTTGGATGTTTAGCTCCTCAATCTAATAAGTGTCAATGAGAGAGCGATATGGAACCCAAAATCCCACATGCTGTATTCTTTAGTAGCCTTTGCTATTAACTAGCCTTGATGATCATAATGCATATCTGCATCTATAGGCCAGAACTGTTACAATCATCCTTTCTACTTGCATTAGAATGGTGTAAATCTTAACAATGTAGCTGTTGTGACATTTGTGGTGTGGGTTAGAAAGTACACTTCATTTTATACCATTAGagattgtgttttgtgtagagAGACTCTGTGGACTGTATGTATTCTCAAAGCCTATGTAGCACtgaacattcactgattcagacTTTCTGCCTGCATTAAGGAATATAACACTTCACTCTTCTTAGATACTTAATGGATAACAGCAGGGCtttgatagatttttttaaaaacttttttcattccctcatactgtatatttgtgcaCTACAATCAGGGATGTCTTTTTTGCTCATCCTTGTTCCTTAATCATtttgtttacactttatttgCTTTATGTGATGAAATGTGAGATACATGTTTTCTTGCAGATctgtcatttaaaataaaatccgTAAGTGTGTTCAA
>XM_026937182.2
GTCCTCATTTGATTAATTTATATCTTCAGATAGCGAATGGGGGTAATATGTCTATGCAAAAATGAGATTTTGTGCGTAAACAGGCGTCTTCCAGATGGCTGTTTTATCTCCTGTCATTTGATGCTACATACCAGGACACTTCATTCTAAGCATTCTGGATGGCCGCTCGTGCGCAACCTCTAGTCTATTCAGTACTGTTTCTTTAAACCAGACTGCATATGAGATATAGCCCAAGATTACACATTTTAACCAATAATTTACTATTGCATAGAGAATAGGAcgatcatttattatttttcctaaCATATCCTAATGGattagtgtctctctctctctctctctcatgctgaGCAAGCAGAATTTTTCCACCCTGTTATGCAAAACTATAACGACGGACTGAAACGATTCGTTCACTGTGTGCGTCAGAGTATTGTCTCTTGCCTTTGCTGTCAAGTCGTCCTGTTTTATTTCCTGCAAACCAAAACCAAGTCATGTCCTTCAGGAGAGGTGTGGTTAGGCAAAGTAAGTTCCGACATGTATTCGCCCAGGCGTGGAAGGCGGAGCAGTGTCTGGATGACGTCAGAGTTTCCCGTGTGACATGGGATGGGCAACTGTGTGCAGCCAATCCAAAGTTCATTGCTGTTATTACTGAGGCTGGAGGGGGCGGAGCCTTTCTTGTATTACCACTCACAAAGACCGGTAGAGTGGACCAGTCCACTCCCACTGTGTGCGGCCATGCTGCTCCTGTGCTTGATATCCAGTGGTGTCCACATGATGACAACGTAATTGCCAGTGCTTCAGAGGACTGCACAGTAAAGATATGGCACATTCCTGATGGCGGGCTCACAGCGCCAATGActgaggctacagtaactctagAGGGCCACAGTAAAAGAGTGGGCATTCTGGCCTGGCACCCTACTGCACTTAACATCTTACTAACTGCAGGTTGTGATAATGTATTGTGCATATGGGATGTTGGCACGGGAGAGCTGGTGTACGAGCTGAGTGATGCTCATCCGGATCAGATCTACAGTGTGAGCTGGAACAGAGAGGGCAGTGTGATCTGTACCACCTGCAAAGACAAAGCCCTGCGTGTTATTGACCCTCGACGGGGAACTATCCTTAAGGTGCGGGAAAAGGCCCATGAGGGCACTAGGCCAATGAGAGGTGTCTTCCTGACTGATGGAAAAATCCTGACAACTGGCTTTAGCCGCATGAGTGAGAGACAGCTGGCCCTATGGGATACGAAAGATCTCTCAGAGCCAATGGCTGTTCAGGAAATGGACACCAGTAATGGAGTTCTCCTTCCTTTCTATGACCCAGATACAAACATGGTCTATCTGTGTGGAAAGGGTGACTGCACTATTCGCTACTTTGAGGTAACCAATGAGTCTCCTTACATCCACTTCCTCAGTCTCTACAGTAGCAAGGAGCCTCAGAGAGGAGCTGGTTTCCTCAGCAAGAGAGGAGTGGATGTTAACAAGTGTGAGATCGCCAGGTTCTATAAACTCCATGAGAGGAAGGTTGAGCCCATTTCCATGACTGTGCCAAGAAAGTCAGACCTGTTCCAGGGGGACCTGTATCCAGACACAGCAGGGTTAGAACCCTCTCTACTGGCTGAAGACTGGATTGCAGGGCAGGATGCTCCTCCAATCTTAGTCTCTATGAGTGGAGGCTATAACACTCCTGCCTCCAAATATAACACACTCCGCGGAAGACCTAAATTACTACCTCAGAGCAACTCAGCTTCTAGCATCAATACCAGCACTACAGCTCTCAGCACAAACACTGctgccagacagacagacagtgagaggacACAGCAAGTGCAAGTTAGGAAAGAGGTTGaaggagggacagagagaacaAGGAAAGAGGATGACCAGCTGGCTGATATTTTGACAGAAGTTCGCGCCCTTCGTGCTCTTGTGTTAGCTCAGGGTCACAGGATCGACATGCTTGAGAGGCAGCTAGCACGATTTGACGATGGAGAAGTGTGACCTACGGAGAACCATAGCCTTAACCTGAACTACAATAGCTTTACATTACAGTGAAGGGTCCTGGGAAATGCAGTTCAATACCTTAAgtgtaacattataaacattgaGCATTAACATTTTATGCTTGTTTTAGATAGGAGATGTGGGTTAATTATGAGTCGATGAAAGGTTAtacaaaaaaagaggaaatttaATATCGCTTTCAGATCAGGTACTGACTACTGCTGCTAATCGGAAACTGATTTAGGAAGGATTGCAGTATGGGctgaagtacttttttttttggtggcaCTAGCATTTGGATGTTTAGCTCCTCAATCTAATAAGTGTCAATGAGAGAGCGATATGGAACCCAAAATCCCACATGCTGTATTCTTTAGTAGCCTTTGCTATTAACTAGCCTTGATGATCATAATGCATATCTGCATCTATAGGCCAGAACTGTTACAATCATCCTTTCTACTTGCATTAGAATGGTGTAAATCTTAACAATGTAGCTGTTGTGACATTTGTGGTGTGGGTTAGAAAGTACACTTCATTTTATACCATTAGagattgtgttttgtgtagagAGACTCTGTGGACTGTATGTATTCTCAAAGCCTATGTAGCACtgaacattcactgattcagacTTTCTGCCTGCATTAAGGAATATAACACTTCACTCTTCTTAGATACTTAATGGATAACAGCAGGGCtttgatagatttttttaaaaacttttttcattccctcatactgtatatttgtgcaCTACAATCAGGGATGTCTTTTTTGCTCATCCTTGTTCCTTAATCATtttgtttacactttatttgCTTTATGTGATGAAATGTGAGATACATGTTTTCTTGCAGATctgtcatttaaaataaaatccgTAAGTGTGTTCAA

Function

NR:

description
PREDICTED: coronin-1B-like

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937181.2 False 2712 mRNA 0.45 11 20333678 20345681
XM_026937182.2 True 2900 mRNA 0.44 11 20334019 20345681

Neighbor

gene id symbol gene type direction distance location
nectin4a LOC108267696 coding upstream 1478 20318437 ~ 20332200 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding upstream 19612 20307130 ~ 20314066 (+)
c4h4orf54 LOC108268294 coding upstream 36532 20289797 ~ 20297146 (+)
mllt3 mllt3,LOC107683508 coding upstream 62447 20221888 ~ 20271231 (+)
hacd4 hacd4 coding upstream 167429 20159312 ~ 20166249 (+)
si:ch211-119e14.1 NA coding downstream 3747 20349428 ~ 20351877 (+)
trnaa-cgc NA coding downstream 6733 20352414 ~ 20352485 (+)
dtx4a dtx1,LOC108267695,LOC108440124,LOC103026639,LOC107558401,LOC107731926,LOC107597891 coding downstream 7039 20352720 ~ 20372376 (+)
msantd1 msantd1 coding downstream 28582 20374263 ~ 20377870 (+)
rgs12a LOC108268015 coding downstream 33094 20378775 ~ 20411656 (+)
G67827 NA non-coding upstream 58003 20250058 ~ 20275675 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 367790 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 416509 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 419275 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 444953 19888178 ~ 19888725 (+)
G67958 LOC108267586 non-coding downstream 134919 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 289667 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 346582 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 519197 20864878 ~ 20895955 (+)
G68299 NA non-coding downstream 842850 21188531 ~ 21189134 (+)
fcer1g LOC100305060 other upstream 178901 20147795 ~ 20154777 (+)
dock11 dock11,LOC107683516 other upstream 266458 19990684 ~ 20067220 (+)
G66864 NA other upstream 1475026 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 2125114 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 2190047 18113433 ~ 18143631 (+)
G68232 LOC108267516 other downstream 674577 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 968537 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1283395 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1406735 21752416 ~ 21762301 (+)
LOC113540463 NA other downstream 2304129 22649810 ~ 22652447 (+)

Expression


Co-expression Network