malrd1 (malrd1)


Basic Information

Item Value
gene id malrd1
gene name malrd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21974743 ~ 22035561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937183.2
CACGTTCAGACTGCCGAATTTACGCATTCCTTTCTGGATTGAGGAGGATTGAGGattgctgggtgtgtgtgtgtgtgtgtgggtgactttttttttttaaagctgggTTTATGTACTTACGTTTATGTGACCTACCTGTCAGAAAGCCTAATGCAAGCACTTGTGTGGCCCTCCGTCTTGGTGTGggctgtgatgtgtgtgtcaggtcAGCCATGCCAGCCAGATGAGTTTGAGTGCTTGAcaggagagtgtgtgtcagagaagTATGTATGTGACTTCAGCCAAGATTGTTCGGATGGTAGCGAAGAGAGAAACTGTACTCATTTAGAGAGATGTGACTTTGAAGATGGGTTTTGTGATCTACAAACACCAGAATCAAATAATCTGTGGAGTCGAGGCTCATGCTTGACTGATCCTGGACCTCGGTTAGACCACAATGGCAACCCTGCAGGACACTACTTGTTCCTGCACTCTGAAACTGGAGAGACAGCCACTGCAGAAATATCCAGTCCATCTTTTCTGCCCTCGGAATCCTGCACGGCCACTTTCTACTATCACATTGGCCAGGTGAGTGGTGACTTACAGGTTCTGGTTAAATCAGAGCCTTCAGGAGAGCAGAGACAAATCTGGATTCAGACCAGACTGAATCCTGAGCCACTTACAAAGCCCTGGATAAAAACATCAGTTACATTCAGACAGAGCCAGGAGTTTCAgGTAATATTTCGTGGACTGGTGTTCAGCAACAGTGATCCTAATGAAGTTATTGCCTTTGATGACTTGTCATTCAGCCCAGGCTGTGTATCAGCTGGAGAGGGAAGGTATGCATCCTCTCCAAGCCCCTCTCAGTTTGACTGTGGGGCAGGTGTATATGTGGACCCAAAGCATGTGTGTGACTTTACTCTGGACTGTCCTCATGGAGAAGATGAGGCCAACTGTCctgCACAGTGTGATTTCGAGGCAGATGCATGTGGCTGGCACGAATTTGTGCCTGATGATGGTTTTGACTGGGTTAGAAGCTCACCTCAAGTCATCTCCACAGACCAACAATACAAAGCACCTCCAAGAGACCACTCTACCAACACAAGCACTGGCCACTTTCTTCTAGTCCAGAAGAACAGCAGTAGTTTTTCTCAGTGTGCTTTACTCCGGAGTCCCACGTTCCAGCAGGCTGGCCCGGACTGTAAAATTACCTTCTGGCATTACAATGCTGGTATGTCTGTGGGTGCAGCCAACATGTACCTGCAAATCAAAGGCATGGACAACCTTACAGTTCTGTGGCGCACACTTTACCATCAGGGAAACTTTTGGCAACCAGTGACTGTGCAGCTTGGCCGCCAGACAAGGCCTTTCCAGATCTTGGTGTCCAAACTGAGCCTGGGTGTGTATGATGGTATCTCCGCACTGGATGACATCACTTTTCACAACTGCTCACTACCAGTGCCCTTGGACAAGTGCCCTACAACTGACTACTTCCACTGTGGGCGGAGTCGAGCATGCGTGGACCGCCTCAAGCTCTGTGACCTTGTTGATGACTGCGGAGATAGAACCGATGAGGAAAACTGCTCCTCTGATTTAATGTGCAATTTTGAGGATGGCTTATGCAGCTGGACTCAGGATAAAGAAGACATGTTTGATTGGACCTGGAACCAGGGACCCACTCCCACCCCCAACACCGGCCCCTATAAGGACCACACGTGGTCCAGTGTGAGTGGACACTACCTCTTCATTGAGTCCTCTGCCCCTCAGCAATTCAAAGACACTGCTGTACTCATTAGTAGACCTTTTAATCCCACTCTCACCAAAGGAGAAGCCCCTCGTTCAACTTGTGTCTTCAGATTCCACTACCACATGCTGGGCCAGTACATCTTCCGATTAGCCATCTACATCCGCAACTATAACACTGGGCGTGGCCAAATGCTGTGGGTTCGCCATGGTGACCAAGGCAACCTATGGCACAGAAAGACCTTGTACATCAACAGTGCACGCCCCTTCCAGATTCTTGTAGAGGGCACAGTGGGGGATGACTTCACAGGAGATATAGCAATAGATGACCTCTCATTTCTGGGCTGTCAGCCATATGAGGgTGTACTCCCTTCATTTGAAGCCAGCACTATGGCTCCTGTCATCACTCGTCCCACATTGCCACCTCATAGCTGTCAACTGGGCCAGTTTGTGTGTGGGGCTTATGGAGAATGTGTGAGCCAGAATCAAGTGTGTGACTTCAGATGGGATTGTTCTGATGGCTCTGATGAAAAGGACTGTGTGATGGAACGGTGTTATTTTGAGGATGGAAATTTATGTGGGTGGAAACTGGATAGCCCCAAACCTCCAGTCCCACTACATGCCTTCCAGTGGCTAATAGGACAGGGAGAAACTATATATCATGGTGAAGAATATCATAGGCCTGTTAATGACCATACACTTGGCACTGCAGAAGGCTGGTACATCTATGCAGACAGCTCTAATGGTGGGTATGGCCATGTATCCGATCTAATAACCCCACCCATCACTGCCACAGGGCCCCAGTGCACCATGGAATTCTGGTACTACATGAGTGGCTTCACTGTGGGAACACTACAGgttTTAATCAAGTCTGGTAATGTCACACATGAGGTGTGGTCTGAAACTGGAAACCAAGGCAGCCACTGGATGCGGGGGAAAATTTTCATTGGAATCCGCCACAATTTTCAGgtcatcctccGTAGCAAGCGAGGCGTTAGTTACATGGGTGATGTGGTAGTTGATGATGTAGAGTTTATTGACTGTGCACCTCCAGTCTTCTCGGGTTTCCCCTGCATGAAGTATGAGTTTGCATGTGCTAATGGACTCTGTATTCCTGATGGCAATCTATGTGACTTTATCGACCACTGTGGGGATGGCTCGGATGAAAACCACTACATCTGCAAGGGCTTTCATGGCCACTGTAACTTTGAATTTGACCTTTGCTCCTGGCGCCAACTGGAGAGTGACAATTCCGATTGGCTAATTAAAGCAGGAAGAACACCCTCTGGGGGAACAGGCCCATCGACTGACCACACTCTGCGCAACTCGTTAGGTCACTACCTGTACAAGGAGAACTCTTTGTCCAAATCATCTGGAGACATGGCTCGAATCTCCAGCCCAGTGTTCAGCCAGAGCAGCAGAGAATGCAAGATGGTGTTTTACCTGCATATGTCTGGTGAGGGCGCTGGCACTCTGAGTGTGTATATGGTCACAAAGTCCTCGCTCTCCCTCCTCCTCAACCTCACCGGGTATCAGGGCAACTACTGGATCAGACAGGAAGTACCCCTTTTCTCCAAAGAGCACTTCCAAGTCATGTTTGAGGGCAAGATGGGTCAAAATGGAAGGGGATATATCAGCATCGATGACATCACTTTCTCGCCAGGCTGTCTCTTTAACCATGATCCCAAGACAAACCTCCCAGACTCTCCGCCCACTGACTTTTGCCAATTAGGTTTACTTCAGTGTGATAAAGGTGACTATTACAAACCAGAGCAACTATGTGATTTTATTGACAACTGTGGAGACAACAGCGATGAGAAGAACTGTGGGACTTCCTGCTCATTCGAAAATGGACGCTGTGGATGGAAGAGCTCTCATGCAGACAATTTTGATTTAATCCTGGGCACTGGCTCCGCCCAGAGCATCAGACCACCATATGATCACACTCTGATGAATGAGAAAGGCCACTTTGTGTATTTGGCAGCCACTCCAGAAGGTCTAAAGGGGGATAAAGCTCATATGAGAAGTTTTGTATATAAAGAGTCCAGCGCCACCTGCAAACTGGCTTTCTGGTACTATATTTCCCACAAGGCAACAGGAGTCATCCGTCTCTTCTTAAAGACAGAGAATGAGCTGAGGGAGGTGTGGATGGAGCAGAGGATGATGCCTGAGTGGAGGAGAGCTGAAGTACCTCTGAGGAACCTGAGAAACTTCGAACTTATCTTTGAGGTAGTGCGTGCGAGAGATGTCAGTGGTGGGGCAGCACTCGACGACTTGCAGTTTATCAACTGTGCCCGCaATGGAACACATCCTGGTTCTTGCCCTGCAGCAACTGATTTTGTGTGCAACAATGGCAAATGTATCATTTCCAGTCTGGTGTGTGACAACAAGCCTGACTGCACCGATGGATCCGATGAACTGGACTGCAGTGGCCTGGCAGGAGCCTGTAACTTCAACATGCCTGAGGATCAGTGGGAGGCGGCGTGTCAACTGGTGCAAGATCAGGATGATGACTTTGACTGGCAGATTGGACACGGCAGAAAACATCAAGGAACAGGACCATTCACTGATCACAGCCCCGATGGTGCAGGGAGCTACCTGTATGTGAACTCAGCCTTGCAGCGAGAGGGGGATGTTGCTCGTATAATCACCCAGCAGGAGTTTCCTGCCAGTACTGGTGTCTGCCATCTGCGCTTCTGGTTCCACATGTACGGCTCCAAACAAATGGGCACACTGaagGTGTACACAGTGGCCAGTAGTGGCATTCCCTTACTGATGTGGGCTGCTAGTGGGAACTATGGAAACAGGTGGCGTTACGATAACGTGGTGCTGTCAAACCCCCATCCCTTCAGAGTGAGTTTTCAGgctgaggtgggaggaaacaagTGGACAAACATCGCCATTGATGACCTCTCATTCACCCGAGAGTGTGCTATAGGAGCTCCTGTCACCCCTGTCCCTCCGACATGTGATTCAGGACAATTCCAGTGTGTGTATTCGTTGGAATGTGTCCAGAGCTGGCGCTGTGATGGTGAAGCGGACTGTGTGGACGGTTCAGATGAGGAGGATTGTGGGAGTGTGGCACCCGGGACTGTACCACCGCAAACAGGCTGTGAGGATGCGCAGTACCGCTGTTCCAAAAACATGTGCATTCCAGCATTGTTGCGCTGTGACAGCATACCAGACTGCCCCAACGGCAAGGATGAATATGGATGTCCTGTTGTGCAGTGTGAGATTGGGGAGTTGGTGTGTGAGGGGACCGGTAGCTGTATTCCTCACAGCAAGCGATGTGATCACACTGTAGACTGTCCTGCCTTTAACTCAGATGAGTCCACCTGCTATGAGTGCCCCAATGGTTACTGCCTCAATAATGGAATTTGTATAGTGGAGAACCATGGGCCTGTGTGCATCTGTAAATCAATGTGGACTGGCAACCGCTGCCATGTGCAGCAAAAACCAACCCCTCCCACTTCTTCAGTTGTGGTTGCTGACAATGGAccagTGTACGCTGCCGTAAGTGTATCAGTGATCCTGATATTGGCTGTTGTCATTGGCACTATTATACTCTTCTTCATACAAAGAAAGTGCACCGCTAAGGATTCCAGGTTGATTGACAATGACGAACTGGACAATTATACTACGGCGTGTAGCGAACAGtttCCAGGTGTGAGGCATAGAGAATCTGCTGTCGTTAAGGCAAGATGGAGTAAATTTCCTAAACTGGCTATCAGTGTTTACCCATGGAGAGATGAACCAGAGtTTCCTGCCAAACTGTCTTTTTCCAACCCACTCTACAAGGAACCCAAAAGCTCCAAGGCCTGaggatagacacacacacacacacacacacacacacacacaatggcacTACAAAACCCCTATGGATGTACTTTTGTAATTTGAACCTTCTTGGCTAACATGACTGTACTTGTACAACATCCAAAgccttaaaaatatatatctatgaaaatttaatttatttgactCTTCTGGGAAAAACGCTGGGAGCAACTGTAAATTGCTAGCATATTACTTTGGCCCTGAGATGTTATAGCCTACATTTAAAGTTTTCAGAGTGGAGGAAGTTGTCGCATTAAGCAGCAAAACTCATTATAACTCCATTATTCTTCAATTAACAAGACAAACTTTCTACTTattttaatttcctgttttgtttagAGTATAAACATGTGTGgttttctttattattcatataagaTAGAATAGACCACAATTCTACTACAAACCATGGGCTTCGTTTAAGATTTAAATCATGAAATGGTTTTCGTGTGGGACCACAGCATATGCCAATAAATGTGGACAGTTTACCAAAACCAA

Function

symbol description
malrd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MALRD1 (MAM and LDL receptor class A domain containing 1).

NR:

description
PREDICTED: MAM and LDL-receptor class A domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937183.2 True 6060 mRNA 0.48 34 21974743 22035561

Neighbor

gene id symbol gene type direction distance location
arl8 arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092,LOC107723111 coding upstream 29155 21934492 ~ 21945588 (+)
cacnb2a cacnb2,cacb2 coding upstream 60511 21849641 ~ 21914232 (+)
LOC113540130 slc39a12 coding upstream 130859 21829024 ~ 21843884 (+)
mrc1a mrc1 coding upstream 145904 21807724 ~ 21828839 (+)
LOC113539992 tmem236 coding upstream 181542 21787190 ~ 21793201 (+)
plxdc2 plxdc2,LOC107724400,LOC107659453,LOC107598695,LOC107684879 coding downstream 9455 22045016 ~ 22163581 (+)
nfx1 nfx1,LOC108268165 coding downstream 134771 22170332 ~ 22184685 (+)
smarcd3b smarcd3,smarcd3b,LOC108268163,LOC108442951,LOC103047704,LOC106578675 coding downstream 155125 22190686 ~ 22239624 (+)
abcf2b abcf2b,LOC108268161,LOC108440639,LOC103022164,LOC107684499 coding downstream 224431 22259992 ~ 22268392 (+)
prkdc prkdc,LOC107598697,LOC103399435 coding downstream 236914 22272475 ~ 22317291 (+)
G68687 NA non-coding upstream 56967 21914806 ~ 21917776 (+)
G68621 NA non-coding upstream 225424 21732946 ~ 21749319 (+)
G68523 NA non-coding upstream 487255 21486974 ~ 21487488 (+)
G68435 NA non-coding upstream 658228 21316255 ~ 21316515 (+)
G68313 NA non-coding upstream 740485 21234025 ~ 21234258 (+)
G68947 NA non-coding downstream 209027 22244588 ~ 22244825 (+)
G68955 NA non-coding downstream 347533 22383094 ~ 22387745 (+)
G68954 scrib non-coding downstream 357278 22392839 ~ 22397101 (+)
G68999 NA non-coding downstream 491767 22527328 ~ 22527556 (+)
LOC113540593 NA non-coding downstream 891249 22926810 ~ 22938741 (+)
LOC113540377 NA other upstream 212442 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 334586 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 650776 21314218 ~ 21323967 (+)
G68232 LOC108267516 other upstream 940990 21020258 ~ 21033753 (+)
fcer1g LOC100305060 other upstream 1819966 20147795 ~ 20154777 (+)
LOC113540463 NA other downstream 614249 22649810 ~ 22652447 (+)
G69509 LOC108267411 other downstream 1282943 23318504 ~ 23320343 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 1992545 24028106 ~ 24106223 (+)
G69971 NA other downstream 2073234 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 2823465 24859026 ~ 24871263 (+)

Expression


Co-expression Network