uck2b (uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741)


Basic Information

Item Value
gene id uck2b
gene name uck2b,uck2,LOC108267616,LOC108430692,LOC104935075,LOC103363741
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28686556 ~ 28690012 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937185.2
GGAGTAGACTGCGTAGTGCACGTAGGCAGGGAGCAGGGAGCAGGGAGCGGTTCGGGACTGGACCCGCACGCGGACAGCAGCACTGCAGCATGGCTGGAGACAGTGAAACCCGACTTCAGGACCAGGAGGAAAACGGCAATGCCATTAAGCAGCCGTTTCTTATCGGAGTTTCTGGAGGAACAGCCAGTGGAAAGTCTTCAGTATGTGCCAAGATCATGGAATTGCTGGGGCAGAATAAGATCGATCATCGGCAGCGGCAGGTCGCCATCCTGAGCCAGGACAGTTTCTACAAAGTGCTCACTCCTGAACAGAAAGCCAAGGCAGTCAAAGGACAGTTCAACTTCGATCATCCCGATGCTTTTGACAACGAGCTGATCTTAAAGACACTTCATGACATCATTCAGGGGAAGACAGTTCAGATCCCGGTGTACGACTTTGTCACGCATTCCAGGAAGGACGAGTTTGTGACGCTGTATCCGGCCGACGTGGTTCTGTTCGAGGGAATTCTCATGTTCTACTCGCAGGAGATCCGGGACCTGTTCCAGATGAAGCTGTTCGTGGACACGGATCCAGACACGCGGCTCTCCCGCAGAGttctgcGAGACATCAGTGAGAGAGGACGCGAGCTGGAGCAGGTCCTGTCCCAGTACATCACTTTCGTAAAGCCGGCTTTTGAGGAATTCTGTCTTCCAacaAAGAAGTATGCAGACGTCATCATCCCACGTGGAGCCGACAACCTCGTTGCGATAAACCTGATAGTGCAGCACATCCAGGACATCCTCAACGGCGGCTTCAGTAAACGCCAGAACGGCAACGCGAACGGTCACATGACCCCCCGACAGAGACGCTCGTCTGAGTCCAGCAGACCGCACTGACCTCGCCGCGTCCCTCTCCTGCGCAGGACGGGGCTGGACTCGTGGAATGACATTCGACGCCCTTTCATCGCATGGAAGGGCGGAGCCGCTTGAGCTGGCTGATATGAGATTTAGTATTGTTCtgcttttactttttcattttccttcccCCAGCTTGAAGTTGGGAgtgttttctgttcttcttcttcttcatcatcatcatcatcattgtcctTGTCTGTAGAAAATAAACGGTGTTTATGTCCTGGctcagactgaaaaaaaaaaa

Function

symbol description
uck2b Predicted to enable ATP binding activity and uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol. Orthologous to human UCK2 (uridine-cytidine kinase 2).
uck2 Enables identical protein binding activity. Predicted to be involved in CTP salvage; UMP salvage; and phosphorylation. Predicted to be active in cytosol. Biomarker of pancreatic cancer.

NR:

description
uridine-cytidine kinase 2-B

GO:

id name namespace
GO:0044206 UMP salvage biological_process
GO:0044211 CTP salvage biological_process
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004849 uridine kinase activity molecular_function

KEGG:

id description
K00876 udk, UCK; uridine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937185.2 True 1143 mRNA 0.52 7 28686556 28690012

Neighbor

gene id symbol gene type direction distance location
czib c7h1orf123,cunh1orf123,si:ch211-284b7.3,LOC103022465,LOC107681739,LOC107719286,LOC107671679,LOC107722617 coding downstream 980 28682472 ~ 28685576 (-)
scp2a scp2,scp2a coding downstream 5852 28668979 ~ 28680704 (-)
dcaf8 dcaf8 coding downstream 44161 28632754 ~ 28642395 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding downstream 58413 28619816 ~ 28628143 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding downstream 67444 28611191 ~ 28619112 (-)
zte38 LOC108267617,LOC108430736 coding upstream 9657 28699669 ~ 28706523 (-)
prdx1 LOC108267618,LOC108430734,LOC105891340,LOC103023705,LOC107577377,LOC107560788 coding upstream 18017 28708029 ~ 28711708 (-)
si:ch73-182a11.2 LOC108268045 coding upstream 32838 28722850 ~ 28736753 (-)
LOC113540626 rec8 coding upstream 55618 28745630 ~ 28756644 (-)
arl14 LOC108267661 coding upstream 72082 28762094 ~ 28763277 (-)
G72796 NA non-coding downstream 17913 28667323 ~ 28668643 (-)
G72726 NA non-coding downstream 214785 28397661 ~ 28471771 (-)
G72709 NA non-coding downstream 303096 28343134 ~ 28383460 (-)
G72720 NA non-coding downstream 307424 28365657 ~ 28379132 (-)
G72665 NA non-coding downstream 546118 28138866 ~ 28140438 (-)
LOC117597077 NA non-coding upstream 23022 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 92911 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 142372 28832384 ~ 28833720 (-)
LOC117597038 NA non-coding upstream 202004 28892016 ~ 28896799 (-)
LOC113540203 NA non-coding upstream 250650 28940662 ~ 29029191 (-)
LOC113540437 fam159a other downstream 34131 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 449751 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 450289 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 460953 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 644771 28016064 ~ 28041785 (-)
LOC117597168 NA other upstream 97602 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 183566 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 458626 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 874209 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 1034576 29724588 ~ 29730857 (-)

Expression


Co-expression Network