stard3nl (stard3nl,LOC107713985)


Basic Information

Item Value
gene id stard3nl
gene name stard3nl,LOC107713985
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23392658 ~ 23401730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937189.2
GAAACAAGTTTCTATTTCGTGCTGACTGCGGCGCTGTGGTTTGTAGCATAAAGCTGCGTTTAGCCATTGTGTTAGAAACTAAGAACTGGCTTGAGGTCAGTGTAAACCCGCCTCGGCGAGCTGACGGCGTGACGGCACGGCCCAGCGTCCACTCacaataatattaacattattatattagcATTAATATAATAAGCAGTTGACTAGCCGGTGTAGCTGAATGTTTGGAGTCTGGGCTAGTTTAACAGCTACTCAGTAGTGTAAGCTTGACTGAACATGGCTGGTAGGTGCAGCTTTCTTGGCTGGTGAGAGAAAGCGGTGGTTGTGGCCTGGTGTGAGTGGCAGGTCATGGCCAGCCAGTCCAGCAGCGTGGACTCGAGAGCCGCAGCAAGGGGTGTGGGCTCCATCAACTCCACCCCTGTGTCTGCCCGCATCGATTCCTACGATGGTGTGGAAAAGAAGTGCATCTCCGACCTCCGAAGAACCTTCTGCCTGTTTGTGACTTTTGATCTTCTCTTCATCACTCTGCTCTGGATCATTGAGCTCAATGTCAATGGAGGGATACAGGAACAGCTGAAAAAGGAGGTGTTAGAATATGACTACCACAATTccttttttgacatttttATATTGGCTGTGTTCCGATTTGCAGCCTTGATCCTGGCGTATGCAGTATTCAGACTGCACCACTGGTGGGCCATCGCGataaCAACGGCGATCACCAGTGGTTTCTTAATTGCAAAAGTTATTATATCAAAGCTGCTCTCTCAGGGGGCATTCGGTTACCTGCTACCCATCACCTCATTTATTCTGGTGTGGCTAGAGACGTGGCTCCTAGACTTCAAAGTTCTGCCACAGGAAGCCATTGACGAAAACAGATATCTAACAATACAGAGTATCTCAGAGAGAGCTCCACTCTTGCTGCCAGGACCTCTCTCAGACGGACAGTTCTACTCACCACCAGAGTCTGTCGCAGATTCTGAAGAAGATCTTGATGACAAGCTTGACCTTGAGAAACCCATCGTCTAGCAGGTGTTCCAAGGTGCCCATATATTGGAATGTCCAGTATAGCTTTATgcgaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgggtTGCTCAGGAGTAATCAATACTGTGCCAGCACTAAGGTCTCGGCATGTGTGACCCTGCCTTGAGCTGCATTTTAGTTTCTGTGATTTATCATCCAAGTGATCTTGGCAGCCACTCTGGTTCCACCACTGCCAAATTTATGTTCTTCAGCCTGACTCTTATCCTCAGTCCAGAACTCAGCCATAATCCCTTTACACAAAACAGTCCAATCAGAACCGTGttcatttggtttaattaatACTATAACAGACACCATGGTGTTTccaagttgttgtttttttgattTGCTCATGAACAAATATCAAAGTTAAAAATGGATGACTGTTCGCTTTTGCTTTTCAATATGTGCTGCACTTTGATATTTTCTTGTTCCACTCGTGTCTACTGTAGCAAATGGCTGCAATCATGACTTCCCGGTGTCTTACATAACGAGGGCCGTTGACGCTTCCTgcgtttatattatatttagatcacttaaaaaacatgtaaatgtcCATTATTTGGAGTTGCAGTTGCACAACCACAGATTATTGGGATGTTCGATGTTCagcatttatttacattgttctttattctgttttattcagtCACCATTTTAACATGTCTGTCAGTCCTTGTATATGAAAATAGGCCTTCACATATTCTAGGCAATTATATTTTACCAATAACATGTTTGGGACCGTTTACTTACCCACAGACTAACATGCACCATAAAGGGCTCATTTGATTCTGCATGATCATAAACTGTTTACAACACTTGTGTAGAATGATCATATGTTCACAGTAATATATGCATGTTGTCTGTCAGTAGACATATACCACATACCACatattgtttgatttttgaGTTAATAGGCAAGAGCTTCTGTATGTGGCGATTATGTGAAACCTCAGCCTTTGAGATTTGATAATCATTCTGTgccattcagttttttttttttcatggtaaatgtaaaatcatttgttttaattaaagtttctgtttatttcagatTA

Function

symbol description
stard3nl Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Orthologous to human STARD3NL (STARD3 N-terminal like).

NR:

description
MLN64 N-terminal domain homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937189.2 True 2117 mRNA 0.43 8 23392658 23401730

Neighbor

gene id symbol gene type direction distance location
epdr1 LOC108267170,LOC107664036,LOC107558964,LOC108437243,LOC107713986 coding upstream 1657 23387009 ~ 23391001 (+)
ranbp9 ranbp9,LOC107556766,LOC107664064 coding upstream 16473 23353969 ~ 23376185 (+)
rnf182 rnf182 coding upstream 43031 23345058 ~ 23349627 (+)
ackr4a LOC108267630 coding upstream 115857 23273523 ~ 23276801 (+)
si:ch211-106h4.6 LOC108267631 coding upstream 162205 23215075 ~ 23230453 (+)
otulinb LOC108268091 coding downstream 193231 23594961 ~ 23608201 (+)
ankhb ankh,ankhb,LOC108437249,LOC107657429,LOC107713990 coding downstream 212710 23614440 ~ 23641469 (+)
mycb LOC108268289 coding downstream 246541 23648271 ~ 23650633 (+)
LOC113540051 NA coding downstream 612126 24013856 ~ 24016743 (+)
LOC113540619 NA coding downstream 619335 24021065 ~ 24024165 (+)
G69522 NA non-coding upstream 23981 23367661 ~ 23368677 (+)
G69514 NA non-coding upstream 61129 23331033 ~ 23331529 (+)
G69449 NA non-coding upstream 100660 23291410 ~ 23291998 (+)
G69443 NA non-coding upstream 107732 23284554 ~ 23284926 (+)
G69294 NA non-coding upstream 388556 23001998 ~ 23004102 (+)
G69570 NA non-coding downstream 45733 23447463 ~ 23457206 (+)
G69641 NA non-coding downstream 209223 23610953 ~ 23611157 (+)
LOC117597085 NA non-coding downstream 253192 23654922 ~ 23767863 (+)
G69722 NA non-coding downstream 356654 23758384 ~ 23774271 (+)
G69735 NA non-coding downstream 444915 23846645 ~ 23849514 (+)
G69509 LOC108267411 other upstream 72315 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 740211 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 1630357 21752416 ~ 21762301 (+)
mettl4 mettl4 other upstream 1752501 21629076 ~ 21640157 (+)
plag1 plag1,LOC107570635 other upstream 2068691 21314218 ~ 21323967 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other downstream 626376 24028106 ~ 24106223 (+)
G69971 NA other downstream 707065 24108795 ~ 24109889 (+)
kif2c kif2c other downstream 1457296 24859026 ~ 24871263 (+)
tnr tnr other downstream 2306097 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 2495287 25897017 ~ 25902006 (+)

Expression


Co-expression Network