si:dkey-154p10.3 (LOC108267397,LOC107736657)


Basic Information

Item Value
gene id si:dkey-154p10.3
gene name LOC108267397,LOC107736657
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24161778 ~ 24170467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937195.2
GTTGACCCCTAAACAACAGCTATGCTAGCTGGCCAGCTAGTCACATTTCCACCGTTAAATTTCATTCTGTCTTGTAGTGTCATAAATCAGCACAGACCAGCGTTTCTGTTATGATCAGTCGCATTAAGGCCAAAGAAACAATTTGAGAACAAAGAACTGAGGTTAGGAAACAGGTCATAGTATGGCTGGGATTAAAGATGCATATCAGCTCATAGACCCTGTAACGCTGAGACTCGGAGAAGAGAGTGTCGCATCCCACCTTTACTGCAGCTCCGTCAAGGGCATTGAAGCTCGTTTGTCCACTTTGGTAGAGGCCTTCTTGGTTGAGGTGTTTCGCTGCCGAGTGTGCCAATTCACCAGCAGTCTGAAGACTAGGATCTGCAGTCACGTCACCGAGAGCCATTCTTCAACATCATCGTCACCATGTCGCCACCTCTCCTGCCTGGAGAAGGAGGATGAGGGGAGTTTGACTGAGCTCGACCAGAACGCCTCTCCTTATGATCTCCATTCTGGCTCCAAAAATGGCGAGGACCACATGGACATGGACCGAATGTTCCTGCTCCCAATGTATGGCATGCTGCAGAACATCAGCCCACCGCCATGCGATATCAGTTTGAGCGCCAACTCTGACAGCAACCTTCATGTGGCCCAGACGTGCGAGGTGAGCACTTTGTTTGACGAAGACAGACACAGCGAAGAAGAGAACGTCTTCCAGCTGGAGGATTCCAGCCATGCACTCCAAGGGCCCCTTTCTGCTGAAATCACCTGTGCTGAGGATGAAGAAATGGCGCAGTCTGCTCATTTAATGACCCTTGGCTTGTGCAGAATCTCTAGTGCCAAATGTCCCTCTCAGCCTGCCGCCTTGTCTGTGCCTCCAGGTGGACAGGATGTCTCAGAGACTTCCCTGGAAGACAAACAACCCCTTCTTACCACATCTGAAATACAAAAGCAGGCTGAAGAGGAAATGGGGCTTTCCTGTGTTTTCTGTCAGGCAGTCTTGGCTAACCATAGCCTGCTAGAGGTGCACCTGAAGTGCCACGACGGTGAGCAGGGCTTCAAATGCCCACTCTGTGGCCGAGCGGCAGCAGACTGGGCCGATATGGAGTGCCACTGGAGGAGCCATGCAAGAAGGAGGTCTAAACACCACAAGTGTTCTTTTTGTCCCAGGACGTTCAGGAGAGCAGATTTGTGTGAAGCTCACCAGAAGAGGCATAACCGAGCTCGGACTAAGCCTGCTTCTCTGACGCAGTGCTCCCTGTGCTTCGAGTGGTGCCGCCCGGGGCAGGAGTGGGAGATGCACCAGCGCTGCCACTTTCAGGGAGGGTTTAAGTGCTTTTACTGCAATTTCACAGAAAAAGCTTGGAAGAAGATGTACAAGCACATCCtcaatcaacacacacaggTTGACGGAGATTCACACCACAAAATATCCTACAACATATCACCCCTGAAGTTTGATGCTCAGATGTCAAACAGTTACTCCAAATGCCTTGGAGATGTGCAAGCGGAGTCATGGAGACATGTGACAAAGATGAGCGTAAAACACGAGGTTGTGGGAAAGAAGAAGAGTGACAAGGACAAAAGGGACTGTGTAACAGCCACCCAGCAGGAGACGAGTGTGGGATTAAAGGCCCCTAAACGGAAAGACTTCTGCTGCGCGCTTTGTGATAAAAAATTTTCCACCAAGCTGACCATGCGGCGTCACATGGATATTCATCAGGGGGAGAAGCCTTTTAAGTGCCCTCGCTGCCACTACAGCACCAGACTGAAAGCCTCACTCATCCAGCACATGCGTGTCCACACAGGTGAAAAGCCTTACAAGTGTCCCCAGTGTTCGTACGCCTCCATCGACAGGAGCTCTCTAAGGCGACACTCACggacacacactcaggaaaagCCCTACTGCTGCCAGTACTGTCCCTACAGCTGCATCCAGAAGAAAAGCTTGGACCTCCACTCACGGCGGCATCACACTGGAGAGTCATTCCCATGCCCACTGTGCCAGTACTCAACACCGGACCGGCAACTGTTGCTgcgacacacacgcaaacaTCACACCTCTGAGAACTCTTCTATACTCGGGCCGAGGAGTGCACCGTCTTCCAAAAGAACCGGAACCTCCAAATAACACGGACTACCAGGGCTGCAATGATTAGTCCGAATAGTTGATGATGTCAGTTAGGAAAAATTGCCTTAACTTGCTTAACCAATGAAGAATATAAGAGAGCATGGGTCTCTATTTCTGGGTGGAATGTAACACTAAGTGAAGCCCCTGGGGGCAGCAGTGGTGCTGACAGTAGTACTGTACCACACAGTGCTACCATGTACAGAGCTGTTTTTAGGCCCAACACTGTGGAGGCAGttttaaagaacacacacaaaacagatcGAAAGATTTCACATACAACATACAGTTAACAGAGCTAAGCCGAACAGAGCCATTAGAGCGAATGTGGAAAAAGGTTTAATATCATTCACACCGAGTTCATGTGGACATGACTGATAGAAAACATGATGGTGAGAGCTGCACTCTCTCTTACAAACACAACTTTCAATGATGGTGGCAACGAGAGGAATTAAAAAAGCAAATCCTTAAACACTTCACGTAAGTAAAAGCATGGTACAATGCAGTCTATGCAAAGCAGAGATGCCTTTCATAACAGTACAAGcattaaaaaatgacagaagCCAAGAGCTCCTGCTTGGGGAGTGGAATATACTAAGCAGTTAATATTACATCTCATTCAAGAGGCTTGGTATTTTCTTTTATGTAATAGTGAAATATGTCTGGCAATTTCATAGATTAATGAGGCAAGTTAAgtttgatttttacatttttagccTGATTCATTTTGTGATTTAATACAGTTTTgataaagagggagagaaaaagatcAAATTAAATCAACAAAAGTCAAAAAGTTAAGGTTTGTGtgctattatttaaaataaatagatgatcaaattctttatttgtaatttaaattggTTGTTATTGTAACAGGGAATAATCATTAGAGATTATCCCTAGAAGAGTCAGTAGAATAAGATGTTAAAAGTAGTTTTTCCTCACagtttttacattatattattgaaaaaaacaataaacaacaatgCCAAATATTTGTTACAGCTTTTCTCATTTATGAGTCACATTTAAGCCAGTTTATCAAAAACTATTTTGCTGATTAGTTCACATGAATAATCGactgttcaaatattttttgtggctCTATAGACTACTAAAACGATATTTGCATTTTGAAGTGGAATCATTTTTAGGTTTGTTTAAA
>XM_034303197.1
GGAAACGGCAAACATAGGAACCGTCTAAAAAATACGAAACCATTCCGAATAGCCAGCATAGTTTCTAATAGTAAGATTTCAATATTTATACAAGAGAAGGGAACTTAATTTAcattgaagtgaagtgtggaCATTTTGGGAGTTTTACTATGCCAAAAGTCTGGTCAAGATgaaaagGTCATAGTATGGCTGGGATTAAAGATGCATATCAGCTCATAGACCCTGTAACGCTGAGACTCGGAGAAGAGAGTGTCGCATCCCACCTTTACTGCAGCTCCGTCAAGGGCATTGAAGCTCGTTTGTCCACTTTGGTAGAGGCCTTCTTGGTTGAGGTGTTTCGCTGCCGAGTGTGCCAATTCACCAGCAGTCTGAAGACTAGGATCTGCAGTCACGTCACCGAGAGCCATTCTTCAACATCATCGTCACCATGTCGCCACCTCTCCTGCCTGGAGAAGGAGGATGAGGGGAGTTTGACTGAGCTCGACCAGAACGCCTCTCCTTATGATCTCCATTCTGGCTCCAAAAATGGCGAGGACCACATGGACATGGACCGAATGTTCCTGCTCCCAATGTATGGCATGCTGCAGAACATCAGCCCACCGCCATGCGATATCAGTTTGAGCGCCAACTCTGACAGCAACCTTCATGTGGCCCAGACGTGCGAGGTGAGCACTTTGTTTGACGAAGACAGACACAGCGAAGAAGAGAACGTCTTCCAGCTGGAGGATTCCAGCCATGCACTCCAAGGGCCCCTTTCTGCTGAAATCACCTGTGCTGAGGATGAAGAAATGGCGCAGTCTGCTCATTTAATGACCCTTGGCTTGTGCAGAATCTCTAGTGCCAAATGTCCCTCTCAGCCTGCCGCCTTGTCTGTGCCTCCAGGTGGACAGGATGTCTCAGAGACTTCCCTGGAAGACAAACAACCCCTTCTTACCACATCTGAAATACAAAAGCAGGCTGAAGAGGAAATGGGGCTTTCCTGTGTTTTCTGTCAGGCAGTCTTGGCTAACCATAGCCTGCTAGAGGTGCACCTGAAGTGCCACGACGGTGAGCAGGGCTTCAAATGCCCACTCTGTGGCCGAGCGGCAGCAGACTGGGCCGATATGGAGTGCCACTGGAGGAGCCATGCAAGAAGGAGGTCTAAACACCACAAGTGTTCTTTTTGTCCCAGGACGTTCAGGAGAGCAGATTTGTGTGAAGCTCACCAGAAGAGGCATAACCGAGCTCGGACTAAGCCTGCTTCTCTGACGCAGTGCTCCCTGTGCTTCGAGTGGTGCCGCCCGGGGCAGGAGTGGGAGATGCACCAGCGCTGCCACTTTCAGGGAGGGTTTAAGTGCTTTTACTGCAATTTCACAGAAAAAGCTTGGAAGAAGATGTACAAGCACATCCtcaatcaacacacacaggTTGACGGAGATTCACACCACAAAATATCCTACAACATATCACCCCTGAAGTTTGATGCTCAGATGTCAAACAGTTACTCCAAATGCCTTGGAGATGTGCAAGCGGAGTCATGGAGACATGTGACAAAGATGAGCGTAAAACACGAGGTTGTGGGAAAGAAGAAGAGTGACAAGGACAAAAGGGACTGTGTAACAGCCACCCAGCAGGAGACGAGTGTGGGATTAAAGGCCCCTAAACGGAAAGACTTCTGCTGCGCGCTTTGTGATAAAAAATTTTCCACCAAGCTGACCATGCGGCGTCACATGGATATTCATCAGGGGGAGAAGCCTTTTAAGTGCCCTCGCTGCCACTACAGCACCAGACTGAAAGCCTCACTCATCCAGCACATGCGTGTCCACACAGGTGAAAAGCCTTACAAGTGTCCCCAGTGTTCGTACGCCTCCATCGACAGGAGCTCTCTAAGGCGACACTCACggacacacactcaggaaaagCCCTACTGCTGCCAGTACTGTCCCTACAGCTGCATCCAGAAGAAAAGCTTGGACCTCCACTCACGGCGGCATCACACTGGAGAGTCATTCCCATGCCCACTGTGCCAGTACTCAACACCGGACCGGCAACTGTTGCTgcgacacacacgcaaacaTCACACCTCTGAGAACTCTTCTATACTCGGGCCGAGGAGTGCACCGTCTTCCAAAAGAACCGGAACCTCCAAATAACACGGACTACCAGGGCTGCAATGATTAGTCCGAATAGTTGATGATGTCAGTTAGGAAAAATTGCCTTAACTTGCTTAACCAATGAAGAATATAAGAGAGCATGGGTCTCTATTTCTGGGTGGAATGTAACACTAAGTGAAGCCCCTGGGGGCAGCAGTGGTGCTGACAGTAGTACTGTACCACACAGTGCTACCATGTACAGAGCTGTTTTTAGGCCCAACACTGTGGAGGCAGttttaaagaacacacacaaaacagatcGAAAGATTTCACATACAACATACAGTTAACAGAGCTAAGCCGAACAGAGCCATTAGAGCGAATGTGGAAAAAGGTTTAATATCATTCACACCGAGTTCATGTGGACATGACTGATAGAAAACATGATGGTGAGAGCTGCACTCTCTCTTACAAACACAACTTTCAATGATGGTGGCAACGAGAGGAATTAAAAAAGCAAATCCTTAAACACTTCACGTAAGTAAAAGCATGGTACAATGCAGTCTATGCAAAGCAGAGATGCCTTTCATAACAGTACAAGcattaaaaaatgacagaagCCAAGAGCTCCTGCTTGGGGAGTGGAATATACTAAGCAGTTAATATTACATCTCATTCAAGAGGCTTGGTATTTTCTTTTATGTAATAGTGAAATATGTCTGGCAATTTCATAGATTAATGAGGCAAGTTAAgtttgatttttacatttttagccTGATTCATTTTGTGATTTAATACAGTTTTgataaagagggagagaaaaagatcAAATTAAATCAACAAAAGTCAAAAAGTTAAGGTTTGTGtgctattatttaaaataaatagatgatcaaattctttatttgtaatttaaattggTTGTTATTGTAACAGGGAATAATCATTAGAGATTATCCCTAGAAGAGTCAGTAGAATAAGATGTTAAAAGTAGTTTTTCCTCACagtttttacattatattattgaaaaaaacaataaacaacaatgCCAAATATTTGTTACAGCTTTTCTCATTTATGAGTCACATTTAAGCCAGTTTATCAAAAACTATTTTGCTGATTAGTTCACATGAATAATCGactgttcaaatattttttgtggctCTATAGACTACTAAAACGATATTTGCATTTTGAAGTGGAATCATTTTTAGGTTTGTTTAAA

Function

NR:

description
zinc finger protein Xfin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937195.2 False 3293 mRNA 0.45 8 24161997 24170467
XM_034303197.1 True 3297 mRNA 0.45 8 24161778 24170467

Neighbor

gene id symbol gene type direction distance location
LOC113540392 NA coding upstream 12810 24145082 ~ 24148968 (+)
ccr9a LOC108267400 coding upstream 24970 24134676 ~ 24136808 (+)
zgc:136930 LOC108267402,LOC107599883,LOC107733879,LOC108430265,LOC107657418,LOC107559002 coding upstream 34542 24121553 ~ 24127236 (+)
LOC113540619 NA coding upstream 137613 24021065 ~ 24024165 (+)
LOC113540051 NA coding upstream 145035 24013856 ~ 24016743 (+)
LOC113540614 NA coding downstream 179 24170646 ~ 24174507 (+)
opn4.1 opn4m2 coding downstream 4791 24175258 ~ 24176754 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107599888,LOC107733878,LOC107657452 coding downstream 8500 24178967 ~ 24183754 (+)
rnf220a rnf220,rnf220a,LOC107557077 coding downstream 124169 24294636 ~ 24409297 (+)
klf17 LOC108267392 coding downstream 305722 24476189 ~ 24478804 (+)
G69987 NA non-coding upstream 22890 24138635 ~ 24138888 (+)
G69966 NA non-coding upstream 77560 24083606 ~ 24084218 (+)
G69946 NA non-coding upstream 151918 24007703 ~ 24009860 (+)
G69878 abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809 non-coding upstream 218706 23940241 ~ 23943072 (+)
G69870 NA non-coding upstream 239082 23921800 ~ 23922696 (+)
G70129 ccdc24 non-coding downstream 395778 24566245 ~ 24566613 (+)
G70130 NA non-coding downstream 396533 24567000 ~ 24567318 (+)
G70134 NA non-coding downstream 400181 24570648 ~ 24570850 (+)
G70138 NA non-coding downstream 403869 24574336 ~ 24574570 (+)
G70139 NA non-coding downstream 412709 24583176 ~ 24583376 (+)
G69971 NA other upstream 51889 24108795 ~ 24109889 (+)
klhl18 klhl18,LOC107657445,LOC107701005,LOC107733883,LOC107730797 other upstream 55555 24028106 ~ 24106223 (+)
G69509 LOC108267411 other upstream 841435 23318504 ~ 23320343 (+)
LOC113540463 NA other upstream 1509331 22649810 ~ 22652447 (+)
LOC113540377 NA other upstream 2399477 21752416 ~ 21762301 (+)
kif2c kif2c other downstream 688559 24859026 ~ 24871263 (+)
tnr tnr other downstream 1537360 25707827 ~ 25881110 (+)
LOC113539772 kiaa0040 other downstream 1726550 25897017 ~ 25902006 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other downstream 2045597 26216064 ~ 26224038 (+)
G71385 NA other downstream 2058297 26228764 ~ 26229191 (+)

Expression


Co-expression Network