ndufs2 (ndufs2,LOC107679282,LOC102781006)


Basic Information

Item Value
gene id ndufs2
gene name ndufs2,LOC107679282,LOC102781006
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20132759 ~ 20143530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937203.2
CTGGGTGAAAACGGTGCCAGTCGGTCGGCCAGCAAAAATGGCGGCGACTATGCTGAGGTCGCTCAAACAACTCGGACGTCCTTCAGCagcaattttaaacaaaaatgttttgacTCCTGCATGCGCTTTGCTTCAAAGGAGGCAGAAGCAATGGCAGCCCGATGTGGAGTGGGCTGAGCAGTATGCGGGTGCAGTCATGTACCCCACTGCCATCACCAAGAATTGGAATCCACCACCATGGAACGACAAAGACCCTCCAGCAGAGAAGGAGGTGTCAAACCTCACTATTAACTTTGGGCCTCAGCACCCTGCAGCCCACGGCGTGCTGCGTCTAGTGATGGAATTGAGTGGGGAGTCTGTGAAGAAGTGTGACCCGCACGTGGGTCTGCTGCACCGCGGCACCGAGAAGCTCATTGAGTACAAGACCTACCTACAGGCCCTACCATACTTTGACAGGCTGGACTATGTGTCTATGATGTGCAATGAACAAGCCTATGCTTTGGCAGTGGAAAAGCTGCTGAATATCCAGGCTCCACCTCGTGCTCAGTGGATCAGAGTGCTGTACGGTGAAATGACTCGAATTCTGAATCACATCATGGGCATCACTACACATGCCTTGGATATTGGTGCCATGACCCCCTTCTTCTGGATGtttgaggagagagagaagATGTTTGAGTTCTATGAGCGAGTGTCTGGAGCCAGAATGCATGCTGCTTATGTCCGACCTGGAGGAGTTCATCAGGACATGCCACTGGGACTTATGGACGATATTTATGAGTGGTGTAAGAACTTCTCTATACGCATCGATGAGGTGGAGGAGATGCTGACGAACAACCGCATCTGGAAGAACAGAACTATTGATATTGGGGTTATTGGAGCAGAAGATGCACTCAACTATGGCTTCAGTGGAGTGATGTTGAGGGGCTCTGGTATTAAGTGGGATTTGAGGAAATCTCAGCCCTATGACAAATATGACGAGGTGGAGTTTGATGTGCCTGTTGGAAGCAACGGGGACTGCTATGACAGGTATCTGTGTCGAGTGGAGGAGATGAGGCAGTCTTTAAGGATCATGATTCAGTGTCTCAACAAGATGCCTGAAGGAGAGATCAAGGTGGATGATGCTAAAGTCGCACCACCAAAGAGATCTGAGATGAAGATGTCTATGGAATCCCTAATCCATCATTTCAAGCTCTACACAGAAGGCTACCAGGTTCCCCCAGGTGCCACATATACAGCTGTTGAAGCACCAAAGGGGGAGTTTGGGGTGTATTTGGTCTCTGATGGCTCCAGCAGACCCTACCGCTGCAAGATCAAAGCTCCAGGCTTTGCTCACTTGGCTGGAttggacaaaatgtcaaaaggaCACATGCTTGCTGATGTGGTGGCTATCATTGGAACTCAGGATATTGTGTTTGGAGAGGTGGACCGTTGAAGAGTCACAATGCCTGTTTTGTGTACATCTGTTTTGTCTTTCAAATTCACTCTAGTAATGTTATGATAGACAACTTCAATCAAGCCTATCCATGTATAAAAACCTAATAAAcggaataaatattttatgtctGT

Function

symbol description
ndufs2 Predicted to enable NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone. Predicted to be part of mitochondrial respiratory chain complex I. Human ortholog(s) of this gene implicated in Leigh disease; hypertrophic cardiomyopathy; inherited metabolic disorder; multiple sclerosis; and nuclear type mitochondrial complex I deficiency 6. Orthologous to human NDUFS2 (NADH:ubiquinone oxidoreductase core subunit S2).

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0051287 NAD binding molecular_function
GO:0048038 quinone binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K03935 NDUFS2; NADH dehydrogenase (ubiquinone) Fe-S protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937203.2 True 1569 mRNA 0.48 14 20132759 20143530

Neighbor

gene id symbol gene type direction distance location
amdhd1 amdhd1,LOC107683519,LOC107738078 coding downstream 174812 19953165 ~ 19957947 (-)
si:ch211-212k18.7 LOC108267884 coding downstream 214331 19911733 ~ 19918428 (-)
LOC113540446 NA coding downstream 221700 19901414 ~ 19911059 (-)
zdhhc21 zdhhc21,LOC107677703,LOC107691467,LOC107743939,LOC107739372 coding downstream 268708 19847582 ~ 19864051 (-)
LOC113540206 nfib coding downstream 296801 19748276 ~ 19835958 (-)
LOC113540737 NA coding upstream 254 20143784 ~ 20143889 (-)
focad focad,LOC101469292 coding upstream 22181 20165711 ~ 20223868 (-)
LOC117597004 NA coding upstream 270395 20413925 ~ 20419029 (-)
map4k2 map4k2,LOC108440821,LOC107660717,LOC107679285 coding upstream 282061 20425591 ~ 20444949 (-)
men1 men1,LOC107679288,LOC107731945 coding upstream 303726 20447256 ~ 20455462 (-)
G67757 kirrel,kirrela,LOC108440115 non-coding downstream 722 20127626 ~ 20132037 (-)
G67719 NA non-coding downstream 65700 20066063 ~ 20067059 (-)
G67562 NA non-coding downstream 302009 19830550 ~ 19830750 (-)
G67535 NA non-coding downstream 307840 19769357 ~ 19824919 (-)
G67556 NA non-coding downstream 344211 19787961 ~ 19788548 (-)
G67891 NA non-coding upstream 153792 20297322 ~ 20327561 (-)
G68075 mta2,LOC107597904,LOC107660724,LOC107709145 non-coding upstream 415848 20559378 ~ 20566758 (-)
G68080 NA non-coding upstream 426869 20570399 ~ 20570930 (-)
G68106 NA non-coding upstream 486636 20630166 ~ 20631710 (-)
G68107 NA non-coding upstream 492002 20635532 ~ 20635793 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 166908 19962582 ~ 19965851 (-)
LOC113539792 LOC108267751,LOC108440128 other downstream 188925 19919480 ~ 19943834 (-)
G67587 NA other downstream 244033 19888179 ~ 19888726 (-)
zgc:112271 bola2,LOC105907194,LOC108436240,LOC105020731,LOC107569065,LOC106511278 other downstream 251119 19879968 ~ 19881640 (-)
LOC113540242 adamtsl1 other downstream 977538 19050150 ~ 19155221 (-)
znf16l LOC108268318 other upstream 635008 20778538 ~ 20825520 (-)
chchd7 chchd7 other upstream 1161162 21304692 ~ 21313897 (-)
G68462 NA other upstream 1182516 21326046 ~ 21329250 (-)
LOC113539989 LOC108436138 other upstream 1211089 21354619 ~ 21371010 (-)
G68760 NA other upstream 1790996 21934526 ~ 21935169 (-)

Expression


Co-expression Network