LOC113540625 (LOC108267346)


Basic Information

Item Value
gene id LOC113540625
gene name LOC108267346
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31587261 ~ 31594687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937209.2
TTTAATTCAACTTCAACACCGTTTAATCTTGACTAGTGTCGATTGTTATGTTTTCttctaatattaattaacatcaGGGTTAGGATCATTTCTGTTTGAGTCAGCTGTACGGTACACAGCACGGAGGTCAAGCGCCAGTGCGCGAATATTACATGCTGCACGGTAGTACAGCTGCAGCCATGACATGTCTCTACTccattttaaactaattttatgCGTGTATATATACACCTAGGACCAAATCTTTACTAAAGATTACAACTTAGACTTATACTACTACACTTCTAAAGTCTTCATATTAAAATTTGACTCAATACCTTACCGAAAATCCTAAATTTTGTTATAATAATGAGTATAGAAATGGCATGGCGGCAGCTGTGGACATAGATATAGTGCTGTTTAATATACTACCGTACACCATGTAATATTCGCGCACTCGCAATTTGGGCCTTAGCCTAGCGGTCTGACAGAAACTCGTTCCTTTGTTTATAAAGCTAACTAGATACAGAGCTAAGTTAGCGAATATCTAAACTTGTGTTGTCAAAACAAAAGTGCTTTTTCTCAGAGGGAATGGATTGGTTTCACTGTAATAACTGTTTTTTGAGGAGAGGGAATAACTTTGTAGTGTCCAGTTGTGGCCATGTACTTTGTGAGAGCTGCATCAAaccaaATCACTGCTGCGTGTGTCAGTCCAGCTGCAGCTACCTGCCTATATCTGACCAGatgaaaccTCAAGAGCAGATGTTCTTCAAAGACCCAATAAGCATCATTCATACCCGACTGGAGCGTATTGCACAGattgCGACATtccagagaaaacagaaagagagagtcatAGCCTTCCACAAACACAAATTTGCGGAGATGGAAAGAAGACTAAAGGAAGTCAGTGAGCAGTGCCACAGGCAGGTGTCAGAGCTCAGGAAGGAGAATGCTGAACTTAAGAAGCCTCTTTCCCAGAGGAGGGTATCCCCTGGGACGTTTAAGGCTAATGGCATTCCAAGAATGACATTACCAGTGGCTGTCACATCCCCAGTCACGCCCCGCTCCAGGACTGTAAGTCGCTCAGGCTCTGGTGAGCCCATGGAGAGGTTTCGACACTTCAGACCCAGCATGGCAtCTCCGCTGGATTCAGCCACGTCTGTTTCCTCCCTGAGTTCACTGAACGAGCATGGATTTAGAACACCCACCTCTGTTACCACACCAATGaggtcaGACCATGTAACGCCGAACATGTTTCAGTTCCAGTTGTTGCCTGGAGCAACATTTCAGTCTCCCCAGCCGTGGAATGTGTAGCGGTCAGGTATCTAACCAAGACACGTCACATCAGCGTGGCTGGTCGCAAACGTGACACCTGTAGATTAGATTTGCAGCCGCAGTGGTTTTCGTGTTCAGTTTGTATATCTCAGATAAGGTGATGGGTTTGAGTTGTGCACTTGTGCAGGTCAGAGACTGTTTGTGAAAGATTTGAAGtaaatggaaatgtgtgtgttgtttcttgtTTATATTCCAGTGCAGTCCTATAAAAAGGGAAAGTTTGAAATTCAGGTTTTGTAGTTCTTATTCTGCTTTTCTGAAGGCCAGTAGAAATCATGCCAGTAAGGTGTCTAA
>XM_034304000.1
TTTAATTCAACTTCAACACCGTTTAATCTTGACTAGTGTCGATTGTTATGTTTTCttctaatattaattaacatcaGGGTTAGGATCATTTCTGTTTGAGTCAGCTGTACGGTACACAGCACGGAGGTCAAGCGCCAGTGCGCGAATATTACATGCTGCACGGTAGTACAGCTGCAGCCATGACATGTCTCTACTccattttaaactaattttatgCGTGTATATATACACCTAGGACCAAATCTTTACTAAAGATTACAACTTAGACTTATACTACTACACTTCTAAAGTCTTCATATTAAAATTTGACTCAATACCTTACCGAAAATCCTAAATTTTGTTATAATAATGAGTATAGAAATGGCATGGCGGCAGCTGTGGACATAGATATAGTGCTGTTTAATATACTACCGTACACCATGTAATATTCGCGCACTCGCAATTTGGGCCTTAGCCTAGCGGTCTGACAGAAACTCGTTCCTTTGTTTATAAAGCTAACTAGATACAGAGCTAAGTTAGCGAATATCTAAACTTGTGTTGTCAAAACAAAAATCACTGCTGCGTGTGTCAGTCCAGCTGCAGCTACCTGCCTATATCTGACCAGatgaaaccTCAAGAGCAGATGTTCTTCAAAGACCCAATAAGCATCATTCATACCCGACTGGAGCGTATTGCACAGattgCGACATtccagagaaaacagaaagagagagtcatAGCCTTCCACAAACACAAATTTGCGGAGATGGAAAGAAGACTAAAGGAAGTCAGTGAGCAGTGCCACAGGCAGGTGTCAGAGCTCAGGAAGGAGAATGCTGAACTTAAGAAGCCTCTTTCCCAGAGGAGGGTATCCCCTGGGACGTTTAAGGCTAATGGCATTCCAAGAATGACATTACCAGTGGCTGTCACATCCCCAGTCACGCCCCGCTCCAGGACTGTAAGTCGCTCAGGCTCTGGTGAGCCCATGGAGAGGTTTCGACACTTCAGACCCAGCATGGCAtCTCCGCTGGATTCAGCCACGTCTGTTTCCTCCCTGAGTTCACTGAACGAGCATGGATTTAGAACACCCACCTCTGTTACCACACCAATGaggtcaGACCATGTAACGCCGAACATGTTTCAGTTCCAGTTGTTGCCTGGAGCAACATTTCAGTCTCCCCAGCCGTGGAATGTGTAGCGGTCAGGTATCTAACCAAGACACGTCACATCAGCGTGGCTGGTCGCAAACGTGACACCTGTAGATTAGATTTGCAGCCGCAGTGGTTTTCGTGTTCAGTTTGTATATCTCAGATAAGGTGATGGGTTTGAGTTGTGCACTTGTGCAGGTCAGAGACTGTTTGTGAAAGATTTGAAGtaaatggaaatgtgtgtgttgtttcttgtTTATATTCCAGTGCAGTCCTATAAAAAGGGAAAGTTTGAAATTCAGGTTTTGTAGTTCTTATTCTGCTTTTCTGAAGGCCAGTAGAAATCATGCCAGTAAGGTGTCTAAGGGTAATTAT

Function

NR:

description
PREDICTED: RING finger protein 212B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937209.2 True 1611 mRNA 0.43 13 31587261 31594677
XM_034304000.1 False 1502 mRNA 0.43 12 31587261 31594687

Neighbor

gene id symbol gene type direction distance location
zp3f.2 NA coding upstream 506 31584100 ~ 31586755 (+)
ap1g2 LOC108267338,LOC108438930,LOC105021476,LOC106569429,LOC100380629 coding upstream 5721 31566281 ~ 31581540 (+)
prmt5 prmt5,LOC107694666,LOC107668985,LOC107558089 coding upstream 26554 31548280 ~ 31560707 (+)
si:ch211-119o8.6 LOC108268351 coding upstream 343182 31239568 ~ 31244079 (+)
copb2 copb2,LOC107567551,LOC107694662,LOC107706339 coding upstream 350360 31222287 ~ 31236901 (+)
dhx9 dhx9 coding downstream 1827 31596514 ~ 31610197 (+)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107557259,LOC107678923,LOC106599430 coding downstream 25158 31619845 ~ 31684467 (+)
lamc2 LOC108267337 coding downstream 95488 31690175 ~ 31706269 (+)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277 coding downstream 137925 31732612 ~ 31753667 (+)
LOC113540131 NA coding downstream 487232 32081919 ~ 32105291 (+)
LOC117597165 NA non-coding upstream 40466 31544698 ~ 31546795 (+)
G74309 psmb5,LOC107668975,LOC106569426,LOC107558100 non-coding upstream 54038 31531453 ~ 31533223 (+)
LOC117597166 NA non-coding upstream 56065 31524103 ~ 31531196 (+)
G74315 NA non-coding upstream 59191 31527856 ~ 31528070 (+)
G74199 NA non-coding upstream 231140 31355554 ~ 31356121 (+)
G74370 NA non-coding downstream 112541 31707228 ~ 31707436 (+)
G74384 NA non-coding downstream 139969 31734656 ~ 31743095 (+)
LOC113540254 NA non-coding downstream 183434 31778121 ~ 31847866 (+)
LOC117597031 NA non-coding downstream 265273 31859960 ~ 31863157 (+)
LOC117597174 NA non-coding downstream 351361 31946048 ~ 31946542 (+)
c4h22orf39 c7h22orf39 other upstream 234117 31351201 ~ 31353144 (+)
spsb4a spsb4a,LOC108267127,LOC108440634,LOC103021520,LOC107706335,LOC107561810,LOC107694659,LOC107583109 other upstream 489332 31061730 ~ 31097929 (+)
G73944 NA other upstream 820129 30746131 ~ 30767132 (+)
uggt1 uggt1,LOC107748935,LOC107683622,LOC107727334 other upstream 1108968 30454757 ~ 30478293 (+)
zgc:153115 LOC108268059 other upstream 1906086 29673514 ~ 29681175 (+)
LOC113540067 NA other downstream 165202 31759889 ~ 31776798 (+)
LOC117597173 NA other downstream 364335 31959022 ~ 32330845 (+)
LOC117597122 NA other downstream 366182 31960869 ~ 31965136 (+)
LOC117596936 NA other downstream 372512 31967199 ~ 31967957 (+)
LOC117597123 NA other downstream 376247 31970934 ~ 31972279 (+)

Expression


Co-expression Network