mfsd8l2 (LOC108267997,LOC108437504)


Basic Information

Item Value
gene id mfsd8l2
gene name LOC108267997,LOC108437504
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29442115 ~ 29452793 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937224.2
ATGGATTACGGACGTAAGAGGAAACTTTCTTTTGTCACAATTGGACTGCTGTTTTTCCTGAGTGGTATTGAATATGCTGTTATCCTTCCCACTATATGGAGGTATCTGCAGATTCTCGATGCCCCGCCGTATTTCCTCGGACTCGGTCTGTCTGCGTTCAGTTTCAGTGGACTCGTGACGGGGCCGTTATTCGGACGCTGGTCTGATAGAACCCGCACTACAAAGACCATCATCCTTTTCTCTAACCTCTTTGAGATTGTGGGGAACTTCATGTACTTCATAGGCTACTCAAAATGGCTTCTCCTGTCCAGTCGACTTGTTGCAGGCATTGGTGCTGGCGCAGGTTCATCCATTTTTGGCTTCCTGACACGGACCACGGTTCCTGAAGAACGAGCTCGAGTGTTCGCTGCTGTGATGGCATCACGCCAAGCCGGACTCCTGATTGGGCCTGCTTTTAACATTTTCCTGCGATTGTGTGATTTTCGACTGGGACCATTCATCGTGAACAAGTACACCGCTCCCGGGCTCTTCATGTGTGCCATGTGGCTGGTGCTCCAGTTAGCCGTGGTTCTGCTATACTGGGACGTCCCTCCGGTGGACACCATGCCAGAGATGCACACTGCCCTCCGCCATGTCAGGGAGGAAGAGGAGTGGCCGCTCGTGTGCTCACAGGGTGAGGATGGTACACCAGGGTCAGGCTCCTACGCCATGGTGCCATCTGATCAGACTGAGACACAGCTTTCAGAAGAACTTGGGCCATCTGAGCCTGGAGCGTCGCCTGCCTCGGATAGTCCTCGTTCCCTGGATGACCCCTTCAAGAACTTCAGCGCCAGCCAAGaGTTCCTGAGGGAGGAGGTGGTGGTTCTCCTCACCGCACAGTTCATCACGCTCTTTAATCAGACCGCACTCGAGACCATGGTAACACCGATGACGCAGAAGTACTTTGGCTTTGGTGAGCTGGGGAACAGTGTGATGTACGGACTGTGCGGTGTGGAGGTGATCGGCGGGTTCTTCCTCGTGCGCTGGCTGAGCCGCGTGCTGGAGGAGCGCGTGCTGCTCGCTGCCGGCCTGCTCGTGAGCTGCGTGGCCTGCGTCTGGTGCCTCGTCTTCCTTGCTGACCCCAAAGGTGGCTTTGCGCTCGAGCTGACCGAGTTCATTATTGGGGTGTTCCTGCAGCTGCTGGGGCTTCCCTTCGTCGCCGTGTCCCAGGTTTCCCTCTTCTCCAAAGTCACTGCAGAGAAGACGCAAGGCTTTAGTCAAGGTGTACGGCGCTCCATTGGAGGTCTTGCCACCATCCTGGGTCCGCTCTGGGCTGGTGGTTTAACTGGGAACTTGTATGTGATGCTTGGAATGATGCTGTTTCTCCTCACACTCATTATGCTCATGATGGCGCTGTCCTACGAAAAACTGGTGGAGCCCCCCGTGGTGCAGCATGCAGACGACTCTGAGAGCGAAGGATAGAGGTGGAAGTCACTCGTTCACCCGTCAAACTGTAcaggACAGCAGCTCGTGGTGGTCCGTCTGGCCCGGGGTTGGGGTGCGTGTGGTGCTCGGTGGAACAGATGCTGGAGCGGTGGTAGTTACGGGCTCGTGCCAGGAGCAGCAGACCTCGGACAGCAAGAgggatggacacacacacacacacacacacacacacacacatacgcccACACGCCCACACatatgctcacacacacctcatacagcTCTGCTTGTTATgttattttcacagttttgtataaaatgtacaatactgtaaatatgaaaatgcatttaaacAGAAATCACACAATTTTTCTAAGTCTCTATGTTAAGGTGTTGCTTTGATTTGCGTCATTGTAGTTTGCAGTGAGTGTACAGACGAGGGCGCTATTCCTccacaacactgagtgtgtgtatgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937224.2 True 1930 mRNA 0.54 12 29442115 29452793

Neighbor

gene id symbol gene type direction distance location
pcolce2a LOC108268019 coding downstream 70589 29359500 ~ 29371526 (-)
chst2a LOC108268021 coding downstream 105412 29333119 ~ 29336703 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding downstream 119198 29300306 ~ 29322917 (-)
zzz3 zzz3,LOC104950552 coding downstream 294623 29131186 ~ 29147492 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 364679 29055012 ~ 29077436 (-)
kcnmb2 NA coding upstream 8248 29461041 ~ 29466020 (-)
eif4a2 eif4a2,LOC108267852,LOC107568626,LOC107593804,LOC105889495 coding upstream 66298 29519091 ~ 29530681 (-)
LOC113540702 NA coding upstream 70601 29523394 ~ 29523466 (-)
LOC113540698 NA coding upstream 70930 29523723 ~ 29523912 (-)
LOC113540697 NA coding upstream 71716 29524509 ~ 29524687 (-)
G73327 NA non-coding downstream 121781 29273589 ~ 29320334 (-)
G73319 NA non-coding downstream 223957 29216270 ~ 29218158 (-)
G73318 LOC107599861 non-coding downstream 227064 29213553 ~ 29215051 (-)
G73247 NA non-coding downstream 245948 29128055 ~ 29196167 (-)
G73423 NA non-coding upstream 87302 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 154808 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 218394 29671187 ~ 29674270 (-)
G73457 rc3h1,LOC108267889,LOC108437509 non-coding upstream 258293 29711086 ~ 29712194 (-)
G73458 LOC108267889 non-coding upstream 260100 29712893 ~ 29713446 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 270194 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 557150 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 650286 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 789690 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 1205310 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 111428 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 271795 29724588 ~ 29730857 (-)
G73619 blvra other upstream 566713 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1288734 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1320656 30773449 ~ 30775819 (-)

Expression


Co-expression Network