eif2b3 (eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854)


Basic Information

Item Value
gene id eif2b3
gene name eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24919527 ~ 24963880 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937228.2
TCCTTCCGGGCTGTTTCAAAATAACGGCACGGGTGTCATCATGTTAGCTACTTGGCTAGCTAGTGAGATTTTCTGAAGCTGAAAAAATTCCTTTATGTTACTGTAGAGCCTCGAACATTTGCTGAATATTTCCTGAATATTTTGTCTTTACCTCGCCGGGGTTGTTTCATTACACTCATTGTGGAGTTTTTGCATTTCTGCTGGAGATTACTGTCAGCTGGAGCTGAATGCTAACCGCGCAGTAGCTTGCATGCGTTACTGCTGAACAGTGGATTAAGATGGAGCTGCAGGCGGTGCTGATGGCTGCTGGTGGTGGGTCGCGCATGATGGACCTGACCTACAACACCCCGAAACCTTTACTGCCTGTGGGCAACAAGCCGCTCATCTGGTACCCGCTCAACCTGCTGGAGAGAGCCGGCTTTGAAGAGGTCATAGTGATCACCACCAAAGAAGTGCAGAAGGCACTGAGCATGGAGCAGCGAGTGAAGCTGGATGTGAAGATGAAGCTGGACGTGGTGTGTATCCAGGAGGAAGCGGATATGGGGACTGCCGACGCCCTACGACACATTCAGCAGAAGATCAAGACGGACATCCTGGTGGTGAGCTGTGACCTGATTACGGACGTGGCGCTGCATGAGGTGGTGGATCTTTTCCGAGCCCACAATGCCACGCTTTCCATGCTCATGAGCAAAGTGCATGAATTCACAGAGACTGTCCCCGGgcagaaaggaaagaagaaagcagGAGAGCAGCGGGACTTTGTGGGAGTGGATGGCACGGGGAAGCGGCTCCTCTTCATGGCTAACGAAGCGGACCTGGAGGAAGGGCTTGTCATCAGGAAGGCCATCATGCGCAAacatcCCAGGATGCACATCAAGACAGGCCTCCTGGACGCCCACCTGTACTGCTTTAAGAGATCCGTGGTTGACTTTTTAGTCGACAACAAGTCCATCTCTTCGCTGCGGGGGGAGCTGGTGCCATATCTGGTGCGTAAGCAGTTCACGAAAGTCTTAAACGACCAGACGGATGACAAGCAGACAGAACAGAATCAGAAGATGAAAGATGCAAGCTCTTCCCTAGAGATCTTGAGCTCCTCCAAAGATGAGGGGCTACTGGAGCTTGCGCGAGATCGCTCCTGCTGGAATGATCATCGTGGAGACATGAGCGAGGCGTACCATGGCTCAAAGCTCCGCTGCTATGTGCATATCATGGAGGACGGCATGTGTTACCGCGTCAACACGCTGGCCGCGTACGTGGAGGCCAATCGCGTGGCTCCCAAACTGGTCGAAGAGCCTCCAGTTCACCCGTCTGCTGTGGTGTCTGAGAGAAGTCTCGTCGGAGGTGACAGCATCATCGGCGCGTTCAGCCAGATAGCAGACAAAACATCCATCAAACGCTCAACCATCGGCGCGTCCACCACAGTCAAGGAGAAAGTCAAGATAACGAACTCTATCATCATGAATGGTGTCACTATTGAAGAAGGGTGTAACATTCAAGGCAGTGTGATCTGTAACAACGCCACGATCGGACGAGGTGCTGACATTAAATACTGTCTGGTGGGAAGCGGCCAGCGCATCGAGCCAGAGGctgaAAGGACCAATGATGTCATCGTTGGATCAGATCAGCTCATGGAGATCTAG
>XM_034304115.1
ATGGAGCTGCAGGCGGTGCTGATGGCTGCTGGTGGTGGGTCGCGCATGATGGACCTGACCTACAACACCCCGAAACCTTTACTGCCTGTGGGCAACAAGCCGCTCATCTGGTACCCGCTCAACCTGCTGGAGAGAGCCGGCTTTGAAGAGGTCATAGTGATCACCACCAAAGAAGTGCAGAAGGCACTGAGCATGGAGCAGCGAGTGAAGCTGGATGTGAAGATGAAGCTGGACGTGGTGTGTATCCAGGAGGAAGCGGATATGGGGACTGCCGACGCCCTACGACACATTCAGCAGAAGATCAAGACGGACATCCTGGTGGTGAGCTGTGACCTGATTACGGACGTGGCGCTGCATGAGGTGGTGGATCTTTTCCGAGCCCACAATGCCACGCTTTCCATGCTCATGAGCAAAGTGCATGAATTCACAGAGACTGTCCCCGGgcagaaaggaaagaagaaagcagGAGAGCAGCGGGACTTTGTGGGAGTGGATGGCACGGGGAAGCGGCTCCTCTTCATGGCTAACGAAGCGGACCTGGAGGAAGGGCTTGTCATCAGGAAGGCCATCATGCGCAAacatcCCAGGATGCACATCAAGACAGGCCTCCTGGACGCCCACCTGTACTGCTTTAAGAGATCCGTGGTTGACTTTTTAGTCGACAACAAGTCCATCTCTTCGCTGCGGGGGGAGCTGGTGCCATATCTGGTGCGTAAGCAGTTCACGAAAGTCTTAAACGACCAGACGGATGACAAGCAGACAGAACAGAATCAGAAGATGAAAGATGCAAGCTCTTCCCTAGAGATCTTGAGCTCCTCCAAAGATGAGGGGCTACTGGAGCTTGCGCGAGATCGCTCCTGCTGGAATGATCATCGTGGAGACATGAGCGAGGCGTACCATGGCTCAAAGCTCCGCTGCTATGTGCATATCATGGAGGACGGCATGTGTTACCGCGTCAACACGCTGGCCGCGTACGTGGAGGCCAATCGCGTGGCTCCCAAACTGGTCGAAGAGCCTCCAGTTCACCCGTCTGCTGTGGTGTCTGAGAGAAGTCTCGTCGGAGGTGACAGCATCATCGGCGCGTTCAGCCAGATAGCAGACAAAACATCCATCAAACGCTCAACCATCGGCGCGTCCACCACAGTCAAGGAGAAAGTCAAGATAACGAACTCTATCATCATGAATGGTGTCACTATTGAAGAAGGGTGTAACATTCAAGGCAGTGTGATCTGTAACAACGCCACGATCGGACGAGGTGCTGACATTAAATACTGTCTGGTGGGAAGCGGCCAGCGCATCGAGCCAGAGGctgaAAGGACCAATGATGTCATCGTTGGATCAGATCAGCTCATGGAGATCTAGAACCAAGGGGAAGACGGCTCATGGGCATGACAAGATTGTCACCAAAGAAGCTTCCTCTTGGAcacctcaatttttttttttttttactgaatgtgTCCAAATAAACATGGAATTATTTATCTCA

Function

symbol description
eif2b3 Predicted to enable guanyl-nucleotide exchange factor activity and translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic translation initiation factor 2B complex and guanyl-nucleotide exchange factor complex. Is expressed in eye and gut. Human ortholog(s) of this gene implicated in leukoencephalopathy with vanishing white matter. Orthologous to human EIF2B3 (eukaryotic translation initiation factor 2B subunit gamma).

NR:

description
translation initiation factor eIF-2B subunit gamma

GO:

id name namespace
GO:0051716 cellular response to stimulus biological_process
GO:0006413 translational initiation biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0005851 eukaryotic translation initiation factor 2B complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03241 EIF2B3; translation initiation factor eIF-2B subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937228.2 True 1640 mRNA 0.52 12 24919651 24963880
XM_034304115.1 False 1486 mRNA 0.53 11 24919527 24963142

Neighbor

gene id symbol gene type direction distance location
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding downstream 7737 24883746 ~ 24911790 (-)
atp6v0b atp6v0b,LOC102788333 coding downstream 164414 24748101 ~ 24755113 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding downstream 179267 24601870 ~ 24740260 (-)
prpf4ba prpf4b,LOC108267396 coding downstream 757734 24148572 ~ 24161793 (-)
LOC113540393 LOC103037289,LOC107098295,LOC103135689,LOC106524523,LOC108267401,LOC108232979,LOC102237517 coding downstream 774501 24139799 ~ 24145026 (-)
cenpl cenpl coding upstream 49326 25013206 ~ 25022416 (-)
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding upstream 175935 25139815 ~ 25255849 (-)
LOC117597083 NA coding upstream 459666 25423546 ~ 25425176 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding upstream 597454 25561334 ~ 25631200 (-)
tnn tnn coding upstream 940560 25904440 ~ 25932761 (-)
G70540 NA non-coding downstream 46694 24872630 ~ 24872833 (-)
G70044 NA non-coding downstream 739663 24179031 ~ 24179864 (-)
G70027 NA non-coding downstream 773286 24145890 ~ 24146241 (-)
G70026 NA non-coding downstream 773743 24145578 ~ 24145784 (-)
G70025 NA non-coding downstream 781035 24138293 ~ 24138492 (-)
G70906 astn1 non-coding upstream 445834 25409714 ~ 25445048 (-)
G70970 NA non-coding upstream 589197 25553077 ~ 25554229 (-)
G71013 NA non-coding upstream 607429 25571309 ~ 25571525 (-)
G71037 NA non-coding upstream 646357 25610237 ~ 25610440 (-)
LOC117597162 NA non-coding upstream 767513 25731393 ~ 25782894 (-)
ccdc24 ccdc24 other downstream 333479 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 614601 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 1387511 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 1401857 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 1403168 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 1408041 26371921 ~ 26376408 (-)
G71596 NA other upstream 1508200 26472080 ~ 26551030 (-)
G71832 NA other upstream 2132722 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 2239903 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 2431477 27395357 ~ 27395429 (-)

Expression


Co-expression Network