brinp2 (brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070)


Basic Information

Item Value
gene id brinp2
gene name brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25139815 ~ 25255849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937242.2
GCTTTCCCGCTTTGCTGGCGGAGCTGCGCGCGCCTGTGGAGCTCGAGCGCGGCTGGACTGTGCGCTGCTTGTGTAAGGTTTCTGTTCAGTCTGAAGGATTAACGCGCCGGAAGCGCTGAGCCTCTTCCTCTCTCCGGTGTGACACAGACTGAGGCATGAGGAGGTCAGGGCTTTTCCTCAGCAGGAGGCAGCTCTCTGAGAGGTGGGGAATGGACGCGCGCTGAGGAGAGTCAAGCTCCCTGTGGATTTAGTATTTTTTCCGCCTGCTCTCGTGCggatgttttttccccccgcGTGCGATCTTGGCGCTCTCACCTGCACTTCTAAGGAAAACTTTAACGATTGCAAGTAAACAGCGCCTCATTAAAGCGTCCTGTGGAACTGCACGTGAGCTTGACGGGTTTAAGGACCGCGTCTCGTTATTGCGCAATCCGAGGAGCAGAGCATGTGTGATCATGACCGGATTACCTTTTCTTCAGCTGACCTTTCTCTCAGCCCGCAGAGGATGCTGATGACGAGCTGCTGAAGAAGACAGCATTCATCCCAGTAAACTCGCCTACTTACTCCAGGAGTGGGACAAGATCTCCACCTGCCATTCCAAGCTGAAGGAAAAGGCGCAGACCAGAGCCAGGAGTGCAGTTTGGGTCAGGCGGGATTGGCAGAAGAATGCTGGTCCCAGGCATCCGGTGGCAGGATGGCGTCGTGTTGGCAGAGCGCTCTGGGTGTTAGATGGTTCCTCTTGATGCTCGTGTGGCGCTGGGCACCTCTGGGTGCTCTGAGCTGGCTCCTTGCCTCAGCCGAGCGCCCTGAGCCTTTGTCTTCCTCCTCTCTGCCTGGCAAGGCAAGTCCGGCTCAGCTGGACTGGCTCCTGTCTGACAAGGGTCCTTTCCACCGGTGCCCGGAGTACACTGAGTTCAAGGAGCGCTTTCAGCAGGGCTTCTCAACACGCTACAAGATCTACAGGGAATTCAGTCACTGGAAAGTGAACAGCTTGGCCACAGAGAAGAGAGATTTCTTCAAGGCTCCACTGCCTCTGTCTCCTGAATTCCTACGCAACCTCAGGCTACTTGGAAGGAGGCCGACTCTCCAGCAGATCCATGAAAACCTGATCAAGAAATACGGCACTCACTTCTTAGTATCAGCTACACTTGGGGGCGAGGAGTCTCTCACCATCTTCCTGGACAAACAGAAGCTCAGCAAGAAGTCTGAGGTCAACGGCAACAGCTCGACGGTGTCTCTGGAAATCCTGCACCAGCTGGCTGCATCTTATTTCACTGATAGAGAGAGCACGCTCAGGAGGCTTCACCACCTACAGATTGCCACCTCAGCCATCAAGGTAACAGAGACCAGAACAGGGCCTCTGGGATGCAGTAACTACGACAGCCTGGATTCTGTCAGCTCAGTGCTGGTGCACAGCCCAGAGAATAAAATCCATCTGAAAGGTTTACAAGATGTTCTCCCTGACTTCCTGCGTAACCGCTTCGTGGAGGCAGCGCTCAGCTATGTGGCGTGCAATTCCGAGGGCGAGCTCTTGTGCCGCAACAATGACTGCTGGTGTCGATGTTCCGCCAAGTTCCCTGACTGCAACTGCCCCTTCTTGGATATCAGAGCCATGGAAGAGAGTCTTCGGAAGAGCAGGGAGGCCTGGATCACCTTGAACAATGAGTTTACTGAGTCAGatgAGTTTAAGGCCTTTCTGAAGAAGCTGCCCACCGATCGCTTTTTGAACACATCATCTATCCTGAAGTTCTGGAGTTTGGACACAGCCTTGCAGAGACGCCACACTCAGCTGGAGACCAGCACTAAACTGATCTTTGGCAAAGCCAACAAAATTGTGCGGAAACTCTTCACCCTCAGCAAGCGCTGTCCCAAACAGCCAAAGATCAGCCTGCCCAGAGAAAGGACATTGGGTTTCTGGTTGAACAGAGTTCAGTCTCTCCTGTACTGCAACGAACATGGAATCCTGGGCTCCTTCTCAGAGGAAGTGCATTACTGCTTGTGTCCTACAGAACAGGGCAGCTCCTGCCAGGGCACAGTTCCTTGTGAGGTGGGTGAGGGCACACTGTGTTCCTTGTGTGCTCCGGACAATGTCACCCGATGTGGCACATGCATGCCTGGTAGCTTCCTGCAGCTGGGCTCATGCCGGCCAGCCGTGGCCATCTCACTGGACCACTATGTGAACTTTGACTTGGACATGGTGGATGCAGAGGCACACCACTTGCTGCAGCGTCTTGACGGGCGCCTGGAGGTGCGTGCAATCTACATCAGCAACGATGTGCGCTTGGGAAGCTGGTTCAACCCAGCGTGGCGCAAGCGCATGCTGCTTACACTCAAGAGCAACAAGAACAAGTCAAACCTGGTGCATATGCTCATGGGAATCTCTTTCCAGATCTGCACCACACAAAACAGCACGCTGGAGCCTGTGCCTGCCATCTACGTCAACCCGTTTGGGGGAAGCCATTCAGAGAGCTGGTTCATGCCCGTCAAGCAGAACAACTTCCCTGACTGGCAGCGAACTAAACTGGACTCAGCACTGCCATGCCACAATTGGACGCTGATGCTGGGCACCAAATGGAAGTCCTTCTTCGAGACAGTGCATGTCTACTTGCGCAGCCGTATCCTCACAGATGACCCGGGTGTCAACGAGACTCTCTTCTATGAGCCTTTGGAAATGGACTCTGCTAACCTGGGGTATATGAAGATCAACAGCCTGAGGGTGTTCGGTTATAGCATGCACTTCGACGCCGATGGTGTCAAGGAGCTGATCTCACAGTTGGACTACCCGTACACACAGGGCACGCAGGACACTGCCTTTCTGGCACTGATGGAGATCCGCGACCGTGTAAATCGGCTCTCGCCACCCACTGAGCGCCCGCTCGACCTCTTCTCCTGCCTACTCCGCCACCGGCTCAAGCTCTCAGCCAGTGAGGTGGCACGTGTCCGCGACTCGCTTCAAAGCTTCAGTGCCAAGTTGCCCAGCTCCTCCAAACCTGAACTTTCCCAGCTGTGCAGCTAGCTCAGATAATTCTctcctgcctgtgtgtgtgtgtgtatgtgtgtgtgaattgcaaatgagaaagaggaagaattCAGCCAGCTGTGCAAGCTAGCTCACATGAATTTCTCCTGCACTTTCCTCTACTATTTTATCTGACTTCTGAAATCTTGTATTGAAagatgtatatactgtatttaacaaTGGACTGAGATGCCCTTAATGGAATCTTTGTATTCAGAAATGCGCTTGACTGGAACATCAAGGCATGGATGGTAAGTTTGTTTATACGTCTTTTTGAAGCTAGCTTGGATAATACTCTCCAGCCTGGGTTTGTGTGAATATGAAtgagcaagagagaaaagaacacGGCCAGCTATGCGGCTAGCTTGTGTGATACTCTCTTGCTTaggcatgtttgtttttatcagaATGTGAATGAGAAAGGCAGGGAGAGAggtaaaaacattattttggaAATGAGTGTCCATGTTCTTGTGGGTTTGCTTTTCTAAGCCTGCCACCTCTGAGCAGCAAAATTGAACCAACTGTAAGTTGTGATTGACATGGGAGTAGCGAGTGCGCATACATCTGAATGTTAAGCAAATTTAACACAGACTGAATCAAGTTGTGCTTTTGAGCAAAGCTTGAAGAGAGACAGAACTGCATCCTAGCCTTTTCTGTGGAACAATGTAAAAACATGACATGTCTGCTCTTTTTCTATGTGTTCGGAGATGTTTAGTATTATTTGGTGACTCTATTTGAAAAAGGGCATAGCTGATGAGGATTACATTCTTATAAATTTATGGTGAAAATTGGTTATACAGTAATAGCGATCAAGACACAGGTTTACTttacttttctatttttatctgATGTCCTAAATCATGTATTGCGAGAtgtttctctgtatttattaCTGGATTGAGATGCCCTTAACAGACGCTTCATATTGagagatatgacaaaaaaacaacaacaaaaaaaaacccaaaaggtTAACATCAAGGCAAACAAAATGGCAAACTGTCTTATTTAAATGTTCCAGTCTTTCAGATGTTGATCTTATAATAACATTACATTGTTTTGCAAAGGTTTGTGGGCAGCTTTGTAAATATTGCTCTGTCATTAATACTCATTCAGGATGTGAAAGCTGCACATTGctctattaaatataaatggctCATCACTCTTATGAATTGAATGAATTTGTACTTTTTGGAACAGGCAAAGACCAAAAACATTTCTTACTCGACAAAAACACGTATCTATTGCCTTATGAAGTGGAGTTTGTGTTCGGATATTAAAGCACACTTGGTCAGCTGTGTCGTTATTTCAAAAATGTGTTGCTCCTTTTGCCTAAGTTCTtgctcttttcttctttattctttttcagctctgattttaattacagtaactaatattctgtaaaaaaaaaaaaaaaatccaatttataATTGACATACTCTGTGAGAAATATATGTATCTGCTCTGTACAAAACCATAAATCTCTGTTTAAAAACCTCCTTTAATGTTCGTCATAACATTTCCGCATTTTCTCATACACTAATTAACTACACTCAGTGACATACATTTGAATTCCTTCAAGCATCTGTGAAACTAAAAGCAATCAAGCATGAggctatttaatatttttatggtcattttgcattaaaattcaTATCCCATCTCATCCATAACACAAATATATGGCATAATAGAGCACTGAGTGTTTGTGTGGACAAGTGTTAATTTTGCAAGACCATGTCCTGAGATCCATCTGTAAATGATCTACAAATCATGTCATTTATCAACACCTTGTTTTGATTTTGCCCTTAGCTGTGGAAATCCTGTCAGCATATATTGTACATCAATGCCTGAAATTACCAGCTTGTCATATAAATAGCAGCATTTATTAGGTGAGGAGGCAATTTGCTAGATTGTCACAAAGGCCGGCAaaaatctctgtctgtctcaacAGACAGCTCTAAGTCACTGAGCAGCCTGAGTAGAAAAGAAGTATATGTGTAGGATGGAGTTTGCAGCAATAGACTGTTCATCTTTATTATCTAGCTCTTGCTCTTTGGCTAATCATCGAGGTGAGGGAGAGCGGCGATCAATCATGAAGGTCTTGCCTAAACTATGGTTGCTCTCTAAAGGAGAAATGAACGTGGTGAATATTCCAGTGATTGGTTATTTATGATGGTTGTATTGCCTTGAGCATGAGGTCGCTTATGCATTGGATTTATGAAATATACAACTGTGCAAGATTTAGATCCTGGATTTACTTTCCCTCCTGAGAAACATGTCCCATCTAATTATGCCAGCTGCATACATAGCAGCCAGAATTACCTGTATAAGATCCCTAAGTGCTTTACTCAAGATTCATATCAGAAAACCATGTCCCAAGTTCAAGAGCTCTGATGTGGAACGCTGTTTTAGAattggttattaaaaaaatgttttaatctaaattcatttaaatgccAAGTAgcgggattttttttccccgttCCCTAATGGCATCCAAGATTTTCTTTGCTATGtggtcagtgtttatttttatggctATTCATAGACACCCAAGAccctgtttgttttgttttttattgtatgttcatgtttcatttaataaatgttttgtttggttgtttgagTAGACATTTATTAtcttgtttgttcatttttattggttgtttgtccatttatttatttacttatgaaCTACAATCAAGCTATCCAACTAGTCCATGCCAAGTTCAAGCATCTCTTAActgcaaatgtttcatttctgcATGTGTTCAGAAGGTTTCCATAACCATGCTGAACAAATGATTTAGGAGAGAGCACTATTTAACATGTTCCACAGCTCTTGCAATACAAAATTACATTCACTATTGCCTAACAGAGGTTTATCCATCAATACTGCTCTCAAGTTTGGCTTAGTTCTTAACAGCACAGACTATCAACACCAGAGTATATCACATGTCCTTATTTTAACAGAGGTTATCATCATCCTGGATTTCTGAGAAGTAACTCCCCTTCAACAGGCTTCACTTAAGTACTATTAGCAGGAATAGGGTTTAGGCCTCACAGTTTTCAACTGGTGATATTACAGTTATTGCAATTAAACAGACATGAATTGCTTTGTTGAATTTAAAGGTAGCATTTAGGCAGTAAAGTTGagattattattcattttcaacCTGGAAGTATAGCAATTGTTCCCCTACTAGTCAAACAGCCTTCCCAACAGTTTTCCTTCCAGGTGGCGTGTACTATATTGCTCGATCCACACAGCACAGGCTTGAAGTTTTGAAACTTTAAGTCTTCCTTGATTTGTCCCTCTTGGAAAAACCTTAAaaattctatgtagaaccctacaacagtgtttcCATATCAGGTAGAGTTCAAAAGTTTGGGAAGCTTAGTACCTTTAACTATTCAAAGTACATGGGATAAAATGCTCTCCttcatatttctttcttattgAGATGAAAATTGCAAATttactactgctattattattttgttttactgtAGATGAAAgtcttaaaaatgaaatatgaaagccGCAGTAAGGTGCTGCTGGAGAAGCTGGAGAATTTAGTGCAGTCCCTGACGTGATTAGTCCATACATGTGGATCTATTACTGTGGTTTGAAAAATGCCATCATTTGACACAGAGCAGGAGTCTTCAACTGGCAGGCTGCAGTCTGGATACAGACCCAACAAAGTACTTCAGCAGATTCAACTGGGCAGAAAACACTATAGCAGAATTGATCAACTTACAAAAAACTGGCCATAGTTCAGCAACTCTAGTTTTGTAAACATGAACCATCACTGCTTCAGTTGTAGCTTATTGCAGTGAATTACACACATCtatgttaattatttagctgaaggcagcttatcaagttttcacagactttcataattaaaaaaatatatatttaatcgCTCTGGTCTGCTGAATAGTGAACgtagctgtttaaaaaaaaataaaaacaatgtttaaagacaACTGGACAGAgaaatatgtgtttattctccagTTCAAGTTCAGAACTGATGTCTGTTCAGAGTCTGTTGTGCTAGTCAGAAGTGTTAATGTAAAGTgccagtgcaaaacaaaacataaccacttcaaattgatgtcttatttatagccatgaactacCACTAAAAGCTAACTGATATCTGTCATTCTGTCAGTGCAGAGGTAGCTctgtggttaagatgttggcctactgattggaaggtcatgagttcattccccagcaccaccaagctgccactgctgggcccttgagcaaggcccttaacctcaACTGCtctgttgtataaaaaaatttttaaaaaatgagataaatgtaagtcgctctggataagggcgtctgtcAAATGTCATGTTAGTTTCCTTTCTGGAACTTtaaaaggaattttatgtaattggACCTTCACAAACTTTAGGATTGTGGTTTTCTCTTGGTGATTGGTCAGAAACTACCCTCATACTGCAGCACTTCCTGACTGGGCCTTTATGTGACTGTAGGTTGGTCTTCATTAAATCAATGTAAAACACCACTTTACATTGCAGACATTTTCCATATCCTCACATTCCATAATTTATATCCTGCATATCTTTTCATGGCAACACACAAATCACAACCTATACTTAACTTTAGGGTGTCTTATCATGGTTTCGAAATGCCTTCAACCTCTATGGATTGTCACGCTGGGATTTAACACATTGTCGCTTACAAATAGCTGTCAGTGTCCAGAACCAAAGTACTGAATGTAAATACTCACTGTTTGAGTCCATTCATTCAATATCCAGATACAATATCGCTCGATTAAGAGCATGAGTTATCAGCATGCAATCCAGCACACAGGATTCTTTTTTGCTGATATGAGTTTggtttgttcattttcatatgTATAATGTACTAGATGCAGATACCTGATCCAGACAGACTGGCCgtgaaatgaaacactgaacTTTGTACTCTTACTGTTCGATCAAAGTTTCTCTCAGTGTTTTAACAGGATGTAAATGttcttatattaaataataaaaagtgatGGAAATCTTTTACCCTGCAATGTCTGTAATAAATATACTGTTATTGA

Function

symbol description
brinp2 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in several structures, including fin bud; gill; head; heart; and muscle. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BRINP2 (BMP/retinoic acid inducible neural specific 2).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937242.2 True 8127 mRNA 0.43 8 25139815 25255849

Neighbor

gene id symbol gene type direction distance location
cenpl cenpl coding downstream 117399 25013206 ~ 25022416 (-)
eif2b3 eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854 coding downstream 175935 24919527 ~ 24963880 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding downstream 228025 24883746 ~ 24911790 (-)
atp6v0b atp6v0b,LOC102788333 coding downstream 384702 24748101 ~ 24755113 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding downstream 399555 24601870 ~ 24740260 (-)
LOC117597083 NA coding upstream 167697 25423546 ~ 25425176 (-)
pappa2 pappa2,LOC107568983,LOC107722077 coding upstream 305485 25561334 ~ 25631200 (-)
tnn tnn coding upstream 648591 25904440 ~ 25932761 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding upstream 714785 25970634 ~ 25973005 (-)
parp2 parp2 coding upstream 1063438 26319287 ~ 26329275 (-)
G70540 NA non-coding downstream 266982 24872630 ~ 24872833 (-)
G70044 NA non-coding downstream 959951 24179031 ~ 24179864 (-)
G70027 NA non-coding downstream 993574 24145890 ~ 24146241 (-)
G70026 NA non-coding downstream 994031 24145578 ~ 24145784 (-)
G70025 NA non-coding downstream 1001323 24138293 ~ 24138492 (-)
G70906 astn1 non-coding upstream 153865 25409714 ~ 25445048 (-)
G70970 NA non-coding upstream 297228 25553077 ~ 25554229 (-)
G71013 NA non-coding upstream 315460 25571309 ~ 25571525 (-)
G71037 NA non-coding upstream 354388 25610237 ~ 25610440 (-)
LOC117597162 NA non-coding upstream 475544 25731393 ~ 25782894 (-)
ccdc24 ccdc24 other downstream 553767 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 834889 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 1607799 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 1622145 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 1623456 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 1116072 26371921 ~ 26376408 (-)
G71596 NA other upstream 1216231 26472080 ~ 26551030 (-)
G71832 NA other upstream 1840753 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 1947934 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 2139508 27395357 ~ 27395429 (-)

Expression


Co-expression Network