zgc:101744 (LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183)


Basic Information

Item Value
gene id zgc:101744
gene name LOC108267447,LOC107738186,LOC107684405,LOC107591448,LOC107659369,LOC108411183
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26857531 ~ 26865515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937246.2
CCAGGCTGTAGCGGAgcgctgtgtgtgagtgagagagagagagagagagagagagagtgacaaagTGAGTTTAACATTCACACCTTTCTGCTCATTAATCCCGCACTTTaccgcacacacagacacgtaCGCGACTTTCCCGCCATGTGGGCCGCGGTGACAGAGCGCTACGAGGCGTTTTTAACGGAGAAGAACCTGCTGACCGACTGTTTAGCGGAGCTCGAGCGGCGCACGGGCGTTCAGAGACAGTACATTGCCTCAGgtgcATTGTGTATCATCGCGCTGTACCTGTTATTCGGTTATGGTGCCTCTCTCCTCTGCAACCTCATTGGATTCACCTACCCTGCATATGCTTCTGTGAAAGCAATTGAGAGCAGGAATAAAGAGGACGACACACAGTGGTTGACGTACTGGGTGGTGTACGGTCTCTTCAGCGTGGCCGAGTTTTTCTCTGACATTTTCCTCTTCTGGTTTCCGTTTTATTATGCTGGAAAGtgtgtgttcctgttatGGTGCATGGCCCCCGTGACCTGGAACGGTTCTCAGGTGATCTACACTCGAGTGGTTCGTCCATTCTTCCTGCAGCACGAGGCAGCGCTCGACAGCATGGTGAAAGACCTGAGTGGAAAAGCCAAGAGTGCAGCGCATTCTGCTGCTAAAGAGGGTTTCACTCTGTTGGCCAGCGATAAggataaataatcattttcagGAGGTGACGtgaagaaaatgacaaaatttctTTTCACCACAGTGCCTTTAATCAACTacatttcatcttcatcatgatcatcatcatcaggagcagcagcagcagagctcCAGCTCTTTGTATTTCATTGATATCattcttataaatatgaattaatgttaatgtatcATATATATCACTCCATAACTATGCCTTGTTCATGAAGAacaatgtgtttttgttctcagatcatttttaatacataaggtaata

Function

NR:

description
PREDICTED: receptor expression-enhancing protein 5 isoform X2

GO: NA

KEGG:

id description
K17279 REEP5_6; receptor expression-enhancing protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937246.2 True 961 mRNA 0.46 5 26857531 26865515

Neighbor

gene id symbol gene type direction distance location
elavl1a elavl1,LOC108267445,LOC108444333,LOC107684401,LOC103034406,LOC107591334,LOC107557423 coding upstream 3382 26846891 ~ 26854149 (+)
sec62 sec62 coding upstream 25958 26823686 ~ 26831573 (+)
gadd45bb LOC108267448 coding upstream 38682 26816061 ~ 26818849 (+)
apoda.1 LOC108267187 coding upstream 87287 26766984 ~ 26770244 (+)
ifi44c2 NA coding upstream 92927 26751636 ~ 26764604 (+)
gpr160 gpr160 coding downstream 35332 26900847 ~ 26902366 (+)
LOC113539948 NA coding downstream 75812 26941327 ~ 26951857 (+)
LOC113540685 LOC108267717 coding downstream 118226 26983741 ~ 27013645 (+)
LOC113540681 NA coding downstream 165225 27030740 ~ 27038359 (+)
LOC113540738 NA coding downstream 247633 27113148 ~ 27113254 (+)
G71557 NA non-coding upstream 926 26808057 ~ 26856605 (+)
G71550 NA non-coding upstream 70971 26784572 ~ 26786560 (+)
G71519 NA non-coding upstream 189403 26667762 ~ 26668128 (+)
G71485 NA non-coding upstream 306505 26472575 ~ 26551026 (+)
G71482 NA non-coding upstream 393217 26464011 ~ 26464314 (+)
G71819 NA non-coding downstream 177188 27042703 ~ 27042912 (+)
G71827 NA non-coding downstream 208326 27073841 ~ 27074076 (+)
G71864 NA non-coding downstream 330486 27196001 ~ 27196373 (+)
G71868 NA non-coding downstream 351837 27217352 ~ 27217839 (+)
G71869 NA non-coding downstream 352712 27218227 ~ 27218455 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 481705 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 564747 26288290 ~ 26292784 (+)
G71385 NA other upstream 628340 26228764 ~ 26229191 (+)
LOC117597118 LOC108261462,LOC108261092,LOC108261095 other upstream 633493 26216064 ~ 26224038 (+)
LOC113539772 kiaa0040 other upstream 955525 25897017 ~ 25902006 (+)
gng7 NA other downstream 7161 26872676 ~ 26881470 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other downstream 519292 27384807 ~ 27406398 (+)
insig1 insig1 other downstream 1437336 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 1450889 28316404 ~ 28338173 (+)
gng5 NA other downstream 1893030 28758545 ~ 28761451 (+)

Expression


Co-expression Network