LOC113540659 (LOC108267452)


Basic Information

Item Value
gene id LOC113540659
gene name LOC108267452
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26808656 ~ 26810250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937255.2
cacacacacacacacacacacgaagcaTTAAGGTGATCTTCATCACCATGACCAGCGTCTGCCTCGTCCTCATCAGCGCCACCTTCTGTCTATCAGCTGTTCTCTCATGCTGTGACGAGTCGCTCGAGCGCCGCTCTGTACACACGGCCATCATCAAAACCCAACAGGAGAAAGACCTGatcGAGGCTCTTCAGGCAGTTCTTGAGAAATTAAAGAACAAACAACTACCAAACACCGCAAAGAAGTTCGGCCAACTTCCCTCTTGTGATGCGGGTGAGCAGTGTGCAGCACGTAAGGGGGCAAGGGTGGGCAAACTGTGTGGCTGCCCCCTCGGGACCACCTGCGATTTCTTCATCATGAAGTGCCTCTGAGGATGAAAGCCT

Function

NR:

description
PREDICTED: cocaine- and amphetamine-regulated transcript protein-like

GO:

id name namespace
GO:0065008 regulation of biological quality biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0031667 response to nutrient levels biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937255.2 True 383 mRNA 0.53 3 26808656 26810250

Neighbor

gene id symbol gene type direction distance location
map1sb LOC108267453 coding downstream 3289 26792023 ~ 26805367 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding downstream 17742 26787087 ~ 26790914 (-)
copa copa coding downstream 22138 26770582 ~ 26786518 (-)
slitrk3b LOC108267197 coding downstream 96352 26708082 ~ 26712304 (-)
ccnl1b ccnl1 coding downstream 129808 26672747 ~ 26678848 (-)
LOC117597119 NA coding upstream 24775 26835025 ~ 26835888 (-)
samd7 LOC108267443 coding upstream 25396 26835646 ~ 26845018 (-)
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding upstream 71218 26881468 ~ 26889336 (-)
skila LOC108267442 coding upstream 93658 26903908 ~ 26913580 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding upstream 106909 26917159 ~ 26933519 (-)
G71707 NA non-coding downstream 111559 26696893 ~ 26697097 (-)
G71705 NA non-coding downstream 112335 26694946 ~ 26696321 (-)
G71704 NA non-coding downstream 118262 26689070 ~ 26690394 (-)
G71700 NA non-coding downstream 136811 26671641 ~ 26671845 (-)
G71699 NA non-coding downstream 137120 26671260 ~ 26671536 (-)
G71734 NA non-coding upstream 37096 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding upstream 43017 26853267 ~ 26856672 (-)
G71764 NA non-coding upstream 84431 26894681 ~ 26895564 (-)
G71765 NA non-coding upstream 124740 26934990 ~ 26935197 (-)
G71815 NA non-coding upstream 221067 27031317 ~ 27036462 (-)
G71596 NA other downstream 257626 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 432248 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2222608 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2503730 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3276640 23531238 ~ 23532016 (-)
G71832 NA other upstream 286352 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 393533 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 585107 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 585901 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 605017 27415267 ~ 27432678 (-)

Expression


Co-expression Network