tnn (tnn)



Basic Information


Item Value
gene id tnn
gene name tnn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 25904440 ~ 25932761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026937257.2
GAATGCCTCACATTATCTCCCTCTGTGATCCCTGAGCTATAGAGAGAGGAACGCCCAGGGTGCCTATTGGCTCAAGGCTGCTCATTTAAACTGTGTGAGGGTTTTTTGGAGCTGGAGGACTACAACACTGCTCAGGAGGGCCAAGTCAGAGCTTCTCGACAGGTGCTCACTGCAAGGCACCTTGAGTAACAGTAAGAGATTCTTGAACTCAGGCAGACTGAGGAGGGACATTCAGAATCAGAGAAATAACTACAGCGGCCATGCTTCCCAGGCTAAATTGGCTTTGGTTGCTCCTGTTTGGGATGCTGGGTGTAGTCTCACTTGTTACACAGGCAGAAGAGTCTGAGAAAGCAGTCACATTTAGCCATGTGTACAGGATTGACTCTGGTTGTAAGCAGGACCAGCAGGCAGTTTTGCCTTCCCAGGACCAAGCATCAGAAGGTCAGGTCATGACGGTGGATGGGGAGAAAGACATTATTTTCAAGCACAACATTAAGTTTCCATCATCTAGCTGCAATTGCGCTGATTCAGAGGAATTCAAATCCCTGCTGTACCGTGTCAATGGTTTGGAGGAGGAGGTTACCTACCTGAAGTCCCAGTGTGCTCAGGGCTGCTGCAGAGGAAGCTCAGGTGGAGACACAAGCTGTAATGGCCATGGTGTATACCAGCACAACACTTGCAGCTGCAAATGTGATGCAGGCTGGGAGGGTCCAGACTGCTCCGTCTCCACCTGTCCGGATAATTGTAATGATAATGGCTACTGTGTAGATGGACGATGCATTTGCCACACTGGTTACATGGGCCACGACTGTGGCCTGCTCACATGTCCTGATGACTGCAATGACAAGGGCCACTGCGTGGAtggcaagtgtgtgtgctttgagGGCTTCTCTGGAGACACCTGCAGCATGCAGAAATGCCCAAGTGACTGCAAAGAGAATGGCCGCTGTATCGATGGACAGTGTCTCTGCGACGAGGGCTTTTTCGGAAATGACTGCTCTATGGTACTGGGTCTAAAAGACCTTCGTGTGATCAGGGTGACTGATGTGTCCCTGCTGGTGGAGTGGGAACATGTAAATAAAGCCGAGTACTACATGCTCTCCTACTATCCTTATGGAAATGAGGGAACCATTCAGGAGATCCGTGTTCCCAACACTGAAAATTCCTACTTGATCACAGGCCTCAAACCTGGAGTTACCTATATCGTGCAAGTACAGGCTGTCATCAAGGGTATCAGCAGTGAACCAGACCGCATCACAGCCACAACAGATTTGTCTGGTGTAGAAGGTGTTCGTGTGCTTGGACAGACAGAGGACTCTATCCAGGTGGACTGGCAGAATCCAGAAACAGAGGTGGATTACTTTAAACTACGTCATGCCAGTCCAGATGGCCAAGAGGAGCTGGAAAACGTAGCCAGGAGCCAGGAGGCTAGGACTGTGCACACCATTATAGGTCTTAACCCAGGCACTGAGTACCAAATAACAGTGCAGGCCATCAAAGGAAGCAATGAGGGCAAACCATCCCATGCCACAGGAGTCACAGACGTTGATTCCCCGAACAACCTGGTCACTAGGAACGTAACCGAGACCACAGTGTCTGTGATGTGGGAGAAGGTCCGTGCTGAGATTGATGGCTACATACTGACCTATAGCTCTGCTGAAGGCTCCAGCCAGGAGATCCATGTGGGAGCAGATGCCACTTCCTACCAGCTCACATCACTGAAACCTGGGGTGCTGTACACCATCTTTGTCTGGGCCTACAAGGGTTCCCGTTTGAGCAAGAAGAGCTCTACTGAGGCTGTGACGGAACTAGATGCACCTACTAATCTCTTGGTCCAAGAAGTGACGGAGGACTCAGCGATGGTGTCATGGGACAGAGTCCAAGCAGAAATAGATGGCTACATACTGAGCTACAGCTCTGCTGATGGCTCCAGTGATGAGGTGCGAGTGGAAGCAGACAGCACCTCCTACCAGTTCACTGGTCTGAGGCCAGGAGTTGTATATACAGTCTACGTCTGGGCCATCAAGGGCTCTCGCTCCAGCAGGAAAGCTACAACACAAACTGAGACAGAAATTGATGCTCCAAAGAATCTGAAAGCTATTGATGTTAAGACGGATTCTGCAGATCTAACCTGGAAACCTCCTCAGGCTCACATTGATGGCTACATTCTTAGTTACAGGCCTGATGACAGTAGTATGCAGactgtTGAGAAGAACTTTGTTGCAGGAGATACCAGATTTAGCGTCTCTGGTCTGGCCACAGGGAAGAAGTATATTGTCACTCTGATTGCCTATAGAGGCTCAAAGAGGAGTAAAGTGGTGGAGACCATATTTGTCACTGTAGGAGCAGCTTATCCCTTCCCTATGGACTGCATACAGATCATGAAGAATGGAAACATGGAGAGTGGAGTTTACAATATCTACGTGGCCAGTGACCGCAATAAGCCAATGCAGGTGTATTGCGACATGACCACAGATGGTGGTGGCTGGATTGTCTTTCAGAGACGCAACACCGGCAAGCTAGACTTCATGAAGCGATGGAGACAATATATCCAAGGCTTTGGGGACCTGACTGATGAATTCTGGCTTGGCCTGGAGAACATCCATGCACTGACCAACACAAGCACAAATTATGAAGTGCGCTTCGATCTGGGCCTCGGAAGCGAGCGTGCTTACGCTGTCTATGATGACTTCAAAGTAGGATCAGCTAAGCAGAAATTTAAGCTCACTATTGGCAATTACAGAGGAAACGCAGGTGATGCTATGTCCTACCACCAGGGCAGACCTTTCACTACTATAGATTCGGACAATGACATTGCCCTGGGTAACTGCGCTTTCACACACCATGGTGCCTGGTGGTACAAAAATTGCCACTTAGCCAACTTAAATGGCAAATTTGAGGACAACAGACACAGCATGGGGGTGAACTGGGAGCCATGGAAGGGCCACCGCTTGTCCCTGGACTATACAGAGATTAAGATCCGCCCAGTGAACACAGCTAGCCGAAAGAAGAGATCACTCAAGAGAAAAGCAGCTGCCTAATGATCAGTAAACTGCAAAGTGAAATGACACAAAGAAAGTAGAAATTGTGATTAATCAAAATATCATATattatctcattaaaaaaatatatgggtGACAACTGGCctttacagattacagatatTGATACAGACATAATTACAGATATTGTACAACTGTATTGCTTTATCTTAGAATAATGTCAAAAggtcaaatgaaaaaaaaaaaatcaatattttattatatttgtccGATGTAGCAACTTGTACAGTGTAAGATTATGGGATTATTCCCTAAACAGCTGTGGTATAGTTGGCCAATTTTCAAACTGTTAAGTGATTTCATATAGTCCCAATGATTCATTCATAATACAAGGGGCATATAAACTGTAAATTAGctatataattaaaattcacACATTATAAGTTCATTTTATCACCATTTCCTcattttacaattattacaGTGTTCAGTATGGAATGATGTCTTATAGATTTGAGGGGTT

Function


symbol description
tnn Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion and neuron projection extension. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

NR:

description
PREDICTED: tenascin-N isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026937257.2 True 3525 mRNA 0.47 15 25904440 25932761

Neighbor


gene id symbol gene type direction distance location
pappa2 pappa2,LOC107568983,LOC107722077 coding downstream 273240 25561334 ~ 25631200 (-)
LOC117597083 NA coding downstream 479264 25423546 ~ 25425176 (-)
brinp2 brinp2,LOC107720848,LOC107700985,LOC107658350,LOC107562711,LOC107722070 coding downstream 648591 25139815 ~ 25255849 (-)
cenpl cenpl coding downstream 882024 25013206 ~ 25022416 (-)
eif2b3 eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854 coding downstream 940560 24919527 ~ 24963880 (-)
LOC117597050 LOC107716899,LOC107653439,LOC107548609 coding upstream 37873 25970634 ~ 25973005 (-)
parp2 parp2 coding upstream 386526 26319287 ~ 26329275 (-)
sdr39u1 sdr39u1 coding upstream 405974 26338735 ~ 26367975 (-)
si:dkeyp-66d1.7 LOC108267601,LOC103040076,LOC107706376,LOC107668989,LOC107738251,LOC107659403,LOC107557715,LOC107591450,LOC108413859 coding upstream 513697 26446458 ~ 26452831 (-)
sppl2 sppl2b coding upstream 646033 26578794 ~ 26595990 (-)
G71298 NA non-coding downstream 367 25903774 ~ 25904073 (-)
LOC117597207 NA non-coding downstream 19183 25884128 ~ 25885257 (-)
LOC117597162 NA non-coding downstream 121546 25731393 ~ 25782894 (-)
G71037 NA non-coding downstream 294000 25610237 ~ 25610440 (-)
G71013 NA non-coding downstream 332915 25571309 ~ 25571525 (-)
G71299 NA non-coding upstream 13450 25946211 ~ 25946576 (-)
G71313 NA non-coding upstream 69840 26002601 ~ 26002826 (-)
G71354 NA non-coding upstream 174705 26107466 ~ 26125084 (-)
G71358 NA non-coding upstream 194491 26127252 ~ 26127479 (-)
G71361 NA non-coding upstream 196887 26129648 ~ 26129854 (-)
ccdc24 ccdc24 other downstream 1318392 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 1599514 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 2372424 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 2386770 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 2388081 23515699 ~ 23516359 (-)
ltb4r2b NA other upstream 439160 26371921 ~ 26376408 (-)
G71596 NA other upstream 539319 26472080 ~ 26551030 (-)
G71832 NA other upstream 1163841 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 1271022 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 1462596 27395357 ~ 27395429 (-)

Expression



Co-expression Network