ntn4 (ntn4)


Basic Information

Item Value
gene id ntn4
gene name ntn4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19971311 ~ 19983277 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937262.2
AGGATCCAGCAGCGCGAGTCTGAGATGCGATGCGTGTGAAGGAGGGAGCTTCTATCGCGCTTCACTGCCCGCACTCTCTCCCGGCACATACACAGTAGGAGTGTGGCGGAGTGTCCTGGTAAACAGATGGCGGCGTCGCGCGCGATTTGCGCCGCTGCGCAGGTGAGCGCTTTCTGTTCAACACGGAGGCAAAGCAGCGCAGCTCCGAGGCGCTCGCGCACCTGGCCGAGCCACGCTAACGCAGTCATGCTTCTGCTTGCCGCTTGAGAAACGCTGGCGCTACTTGCGGATCCTGCGCCTTGTTTTGGGACAAGAGAATATCCACTCCAGCGCTATTCGAGTCTTCTTAAGAGATTGGAGacggttttgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacattttgACTGGGCATCGATGGAGAGGTGGGCGTTGTTTCTCGTGCTCGCGTGCGGCGCTTCTCACTCTGCGCGTTCAGGCTGTGAGAACCGTGTATGTAATCCTCGTATGGGCAACCTGGCCACTGGGCGCCCCATGCTCACGGACACGCAGTGCGGCTCCACTACACCAGAGTACTTATGTAGCTATGACGATGGCAGCTGTGTACAGAAGTGTAAAGTGTGTCACCCTCATGCTCACCCACCCACCTCCATGACCGACTCGTCCTTCATACAGCCGCCTACATGGTGGCAGTCAGCCGGAGACGCTATCACTGAAACGTTGCAGTTGGACCTGGAGGTGGAATTTTACTTTACCCATTTGATTATGATCTTCCACTCACCACGCCCTGCAGCCATGACTGTGGAGCGTTCGCGTGATTTCGGGCATACATGGAGTACCCTACACTTATATGCCCGCAACTGCAGCTCCTGGTTTGGACTAAAAGATGGCCATGGATGTACTGAGAAATACTCATCACCAAGGCCATGTAGTGGTGGagagGTTATATATCGTGCTCTCTCTCCCTGGGGCATAGTAGAACCCTACAGCTCAGAGGCTCGTGCCCAACTTGGCATCACCAACCTCCGAGTACGCCTGCTGCAGCCCCAGCCATGCCCATGTCAACTCAAAGAGAGTAATACCAGCCTCCGCAGTGTCCCCTATGCCATCTCGGACTTCATCCTGAAGGGAGCCTGCTTGTGCCATGGCCATTCTGATCAGTGTGTGCCAGCCACTGGCTCCCTGGCCACACACAATGGTGGACACCATGTGGTGCATGGCAAATGTGTGTGTCGGCATCACACAGCAGGTGATCACTGTGAGAAATGTGATCGTCTCTATAATGACCGACCATGGAGACCAGCAAGTGGCCTAACTGGAGAAGCTCACCAGTGTGCTAAGTGCAAGTGTAATGGACATGCAGAGAGTTGCCACTTTGACATAAGTGTGTGGCTGCGTTCTGGTCAGAGAAGTGGAGGTGTGTGTCACTGCTTGCACAATACAACAGGTCGACACTGTGAGCAGTGCCAGATTGGCTTTTACAGACATCCAGAGAGACTACTGACCGCTGCCAACTCCTGTACAGCTTGTTTGTGCAACCGTGTTGGAACTGAGAGTTGTAACTCTGCTAATGGGGACTGTATCTGCAAGCCTGGTGTGGCCAGCCCACTGTGTGACAAGTGTATGCTGGGATACTGGGGTTTCAGTGAGTATGGCTGCAGACCTTGCCACTGTGCAGGCGACTGTGATCCATACACTGGAGACTGCATGACGGGgtcagaTCCTGATCACAACACCACCTTATTTCGAGCAGAAGAACTTTTTTCTGCCCTGAACTTTCAAGAGAAATGTGTCTGCAAACAGCTGTCCCTTAGGAACAGAAAAGTCTTCTGCATTATGAAATATTCCTATGttcTAAAGGTAAGAGTGCTGGCAGCACATGATAAGGGCTCTCATGCCGAGGTGGATGTTAAAGTTCTGAAGGTGCTGTGGAGCAGCTCCACCCTCAGGCTCATGCAAAGAACTGTCACTCTGTATCCAGAGTCCTGGACCACTCGAGGCTGTACCTGCCCTGTACTGTACCCAGGGGAGGAATATCTTGTTGCTGGGCACCATGATGTGAGGAAAGATCGTCTTCTAGTCAACATGAAGAGTTTAGTGAAGCCATGGAGACCCAATCACAGTCGTCGAGTGCTACAGCTCCTTAAAACTAAATGCACCTGAGTTAGTTAGCAAGTACgcaagagaaaatgaaagagagaggaggggggtGTCGGATGTGGTCAAATTCAGCCAAAATTATTGTGAATTTACACAATGTCTTTTGCAACTGTGTGtcactgaatgtgtgtgagagatgaggTCAGTTATGAATGTCTGTTGTACAGAATGTATATTCATTGAATGTACATATTATAATGTATGAAATTTTTGTATCTTTTGGAGCCTGTACATACAATGCCATTTGTATATAATGTCTCAATGACAATATGCTCATAAAATGCAATAGAAAATGGTTTAGgactgacaaagaaaaaaacataactggCATTTTTTTGGATAACTGGCATTATTTCTTCTAGGACCCTGCTTTCAGGAAAATACCAACTTTGATGAAACTACTTGGAGAcaatgcttttaaataaattactacAGTTGGAAA

Function

symbol description
ntn4 Acts upstream of or within blood vessel morphogenesis. Predicted to be located in extracellular region. Predicted to be part of laminin complex. Is expressed in blood vessel; brain; neural rod; tail bud; and trunk. Orthologous to human NTN4 (netrin 4).

NR:

description
PREDICTED: netrin-4

GO:

id name namespace
GO:0048514 blood vessel morphogenesis biological_process

KEGG:

id description
K06845 NTN4; netrin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937262.2 True 2607 mRNA 0.50 10 19971311 19983277

Neighbor

gene id symbol gene type direction distance location
si:ch73-71d17.2 LOC108267752 coding upstream 18088 19943740 ~ 19953223 (+)
slx1b LOC108267068,LOC108436203,LOC107677699,LOC107583271,LOC105020774,LOC107721665 coding upstream 84610 19881928 ~ 19886701 (+)
LOC113539773 LOC108267568 coding upstream 99162 19867151 ~ 19872149 (+)
LOC113539894 bank1 coding upstream 276795 19651897 ~ 19694516 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding upstream 486165 19481055 ~ 19485146 (+)
LOC113540455 NA coding downstream 85784 20069061 ~ 20075035 (+)
LOC113540456 LOC108268101 coding downstream 98493 20081770 ~ 20087305 (+)
LOC113539830 NA coding downstream 108610 20091887 ~ 20099077 (+)
trnar-ucu_2 NA coding downstream 117748 20101025 ~ 20101098 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding downstream 119204 20102481 ~ 20129464 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 5423 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 54142 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 56908 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 82586 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 89572 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 266781 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 497323 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 652071 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 708986 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 881601 20864878 ~ 20895955 (+)
G66864 NA other upstream 1112659 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1762747 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1827680 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1960349 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 2351232 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 7407 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 164518 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1036981 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1330941 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1645799 21629076 ~ 21640157 (+)

Expression


Co-expression Network